CDS Information : SJA_C1-00140

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	11,343 / 8,578 / -
Location	complement(8578..11343)
Type	CDS
Length	2,766 bp (921 aa)

Product	TonB-dependent receptor-like protein
Gene name
Functional category	Cell envelope and cellular processes - transport / binding protein & lipoprotein
EC number
Note	outer membrane receptor proteins, mostly Fe transport
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q1ND50_9SPHN TonB-dependent receptor Alignment 2 E=0 Q1GNN9_SPHAL TonB-dependent receptor Alignment 3 E=0 Q2N5G4_9SPHN TonB-dependent receptor by acc 4 E=1e-156 Q1GRU7_SPHAL TonB-dependent receptor Alignment 5 E=1e-130 Q0Y003_9RHOB (Q0Y003) TonB-dependent receptor:TonB-dependent receptor, plug precursor not found in DB
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000531 TonB-dependent receptor (Domain) G3DSA:2.40.170.20   no description PF00593   TonB_dep_Rec IPR010917 TonB-dependent receptor, conserved site (Conserved_site) PS01156   TONB_DEPENDENT_REC_2 IPR010917 TonB-dependent receptor, C-terminal (Domain) PS01156   TONB_DEPENDENT_REC_2 IPR012910 TonB-dependent receptor, plug (Domain) PF07715   Plug G3DSA:2.170.130.10   no description
SignalP	Bacteria, Gram-negative
TMHMM	No significant hit
SOSUI	Transmembrane 1

size of protein	921 amino acids
molecular mass	97,446.04 Da
pI	6.72
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12.2 (112aa) 6 (55aa) 10 (92aa) 4.3 (40aa) 4.1 (38aa) 1.3 (12aa) 3.7 (34aa) 0.5 (5aa) 11.1 (102aa) 8.5 (78aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.7 (62aa) 0.9 (8aa) 5.6 (52aa) 4.1 (38aa) 3.7 (34aa) 2.7 (25aa) 0.9 (8aa) 5.3 (49aa) 5.1 (47aa) 3.3 (30aa)

>SJA_C1-00140 TonB-dependent receptor-like protein
ATGAAGAAAAGCCTTTGGCTGATTTCTGTCGGTGCCATTGCATTGGGCAGCAGCGTTCCG
GTCGCATGGGCGCAGGACAGCGGATCAGCCGTCGATTCCGAAAACGTCAACATCATCGTA
ACCGCGACCCGACGCGCCAGCCCGCTGTCCGACGTGCCGATCGCCGTGTCCGCCGTGACG
TCGCAGGCGATGCAGAATAGCGGCGCGACAGACATTCGCGCGCTCAACCAATTGGCTCCC
TCGCTGCTGCTCTCCTCCACGGGGACAGAGGCCAACGCCTCGGCGCGCATCCGCGGCATC
GGCACGGTGGGCGACAATCCGGGGCTGGAAAGCTCGGTCGCGGTGTTCATCGATGGCGTT
TATCGCTCCCGCACCGGCGCCGGCCTCAACGAACTGGGCGAGATCGAGCGGGTGGAGGTG
CTGCGCGGCCCCCAGGGCACGCTGTTCGGGCGCAACGCGTCCGCCGGCCTCATCAACATC
ATCAGCAAGGCGCCGGAATTCACGCTGGGCGGAAAAGCCGAAGTCACCTACGGCAATTAT
GATTATTGGCGTCTGGCGGGCCGCGTCACCGGGCCGGTCACCGACAAGCTGGCGCTCAGC
CTGGACGGCGTCTGGTCGAAGCGGGACGGCTTCTACGACCTGGTGAACGCCAGCGGCGCC
AAGGTTGGGGAAACCAATGACCGCGACCGTTATTTCCTGCGCGGGCAGGCATTGTTCCAG
CCGAATGACGCGCTCTCCATCCGTCTCATCGGGGATTATACCCATCGCGACGAAAGCTGC
TGCGGCGCCCCCTATATCGAGACGCGGGAACGCCGCCCGGTCGCGGGCGGCGGCTACAGC
ACGGCGCCCTTCAACCGGATCGCCGCCATCCTGGCGGGGCAAGGCAGCGTCTTTGGCGCC
GATCCCTATGATCGCGACCTCACCATCACGGCCGGCCGGAATTATGTGAGCAAGCTCAAG
GATTGGGGCGTTTCGGGGGAGATCAACTATGACCTAGGCGGCACCAAGCTGACCAGCATA
ACCGCCTATCGCCATTACAAGAGCCAGGATTATGGCGATTACGACTATGGCGGGGCCGAC
CTGCTCTACCGCGATCCCAACACCCATCGTCAGTTCAAGACCTTCACCCAGGAACTCAGG
GCGCAGGGATCGGCCTTCAACGATGTGCTCGACTGGCTGGTCGGCGGCTATTATGCGCAT
GAAAAGCTCACGCTGGAGGATAATATCGTCTTCGGCGCGGACTATGGCCGCTTTGCCGCC
TGTCGCCTGATGGCGGGAGCGAGCGTCAACAGCAATTTGACGGCGGCGCAGCTTGCCGCT
TGTGGCAGCGGGCTTGCGACGCAGGCGCTGATCACCGGCACGCAGGCGCAGCTTAACGCC
GGCCTCATCCTTGCCGGCGTTCCAGCCTTGCAGGCCGGGGCGATTTCCACCGGCCTGGGC
AACGGTCTCCGCGCGCTGGCCGCGATCCCGTCGGGCACCGGCGACGTTGCCTCGCTCTAC
CATCAGAAAAGCGAGAATTGGGCGCTGTTCACCCATAATATCGTCCACATCACCAGCCAG
CTCGATCTGACGCTGGGCCTGCGCTACACCCATGAAAGCAAGCGTTTCTCGGCCGATTTC
AACAATAACAACGCCACCTGCGCGGCCTTGCAAGCGTCCAGCCTTCCCGCCATCGCAACC
AATGCGCAGCTCGGCAGCGCGGCGGCCTTGGCGGGCGGAATCCTGACCCTGGGTTGTCTC
GGCAACGGGTCGACGGGGCTGAACGCGCTCGACCTCAACGACAAGATCAGCGACGGGGAA
TTTTCCGGCACCGCCGTCCTGTCGTGGAAGCCGATCCAGGAATTGCTGGTCTATGGCAGC
TATTCGAAGGGCTATAAGGCAGGCGGCTACAATCTCGACCGCTTCCAGCTCGGATCGACG
GGCCTGAACGCGGTGCCGGCCGTGTTCGCGCCGCGCACCAACGCCGACGTGACCAGCCTG
CGCTTCGCCGCGGAAAAGGTGGACGCGTTCGAAGTGGGCCTGAAATATACCCAGCCCAAA
TGGAGCGCGAACATCGCCGCCTTCCGGCAGGAGTTCAAGAATTTCCAGTTAAACACCTTC
AACGGCACCAGCTTCGTCGTGCAAAACATCAATGGCTGCGACGGGGCGCTGACGGCGGCG
CGGACCTGCGCTGGCGGTGATGTGGGACCGGGCTTGATCAGCCAGGGCGTGGAACTGGAA
CTGTCGGCAACGCCGGCGCGGAACGTGCGGGTGGCCGGGGGCTTCACCTATGCCCGCGCC
AAGTTCGCCAACCGCCTGGTCGGCAGCAGCAACGGAACGGTGCCGCTCGATCCGGCGCTG
TTCCTGCTGCCGGGATCGATCAACTCCCAGGCGCCGGAAGTCGTGACGACAGTCAGCGCG
GCCTGGACGCCTTCGCTTGGTTCCAACGGCCTGTCGGCGCTCTTCTATGTCGATGGGCGC
ATGAGCAGCGACTTCAACACCGGGTCCGACCTGTTCCCCGAAAAGCGGCAGGACGGCTAT
GCGGTGTTCAACGCCCGTGTCGGCATCCGCGGACCGCAGCAACGTTGGGCGGTTGAATTC
TGGGGCCAAAATATCTTCAACCAGGACTATAGCCAGGTCGCCTTCAGCACCCCGCTGCAG
TCGAGCAGCCCGTCCACCTCGACAACCGGCCAGTTCGCCCTGGGCGCACCGATGGCGAAC
CAGCTCATCTCCGCCTATCTTGCCGAACCCCGCACCTACGGCATCACTTTGCGCGGGAGT
TTCTGA


>SJA_C1-00140 TonB-dependent receptor-like protein
MKKSLWLISVGAIALGSSVPVAWAQDSGSAVDSENVNIIVTATRRASPLSDVPIAVSAVT
SQAMQNSGATDIRALNQLAPSLLLSSTGTEANASARIRGIGTVGDNPGLESSVAVFIDGV
YRSRTGAGLNELGEIERVEVLRGPQGTLFGRNASAGLINIISKAPEFTLGGKAEVTYGNY
DYWRLAGRVTGPVTDKLALSLDGVWSKRDGFYDLVNASGAKVGETNDRDRYFLRGQALFQ
PNDALSIRLIGDYTHRDESCCGAPYIETRERRPVAGGGYSTAPFNRIAAILAGQGSVFGA
DPYDRDLTITAGRNYVSKLKDWGVSGEINYDLGGTKLTSITAYRHYKSQDYGDYDYGGAD
LLYRDPNTHRQFKTFTQELRAQGSAFNDVLDWLVGGYYAHEKLTLEDNIVFGADYGRFAA
CRLMAGASVNSNLTAAQLAACGSGLATQALITGTQAQLNAGLILAGVPALQAGAISTGLG
NGLRALAAIPSGTGDVASLYHQKSENWALFTHNIVHITSQLDLTLGLRYTHESKRFSADF
NNNNATCAALQASSLPAIATNAQLGSAAALAGGILTLGCLGNGSTGLNALDLNDKISDGE
FSGTAVLSWKPIQELLVYGSYSKGYKAGGYNLDRFQLGSTGLNAVPAVFAPRTNADVTSL
RFAAEKVDAFEVGLKYTQPKWSANIAAFRQEFKNFQLNTFNGTSFVVQNINGCDGALTAA
RTCAGGDVGPGLISQGVELELSATPARNVRVAGGFTYARAKFANRLVGSSNGTVPLDPAL
FLLPGSINSQAPEVVTTVSAAWTPSLGSNGLSALFYVDGRMSSDFNTGSDLFPEKRQDGY
AVFNARVGIRGPQQRWAVEFWGQNIFNQDYSQVAFSTPLQSSSPSTSTTGQFALGAPMAN
QLISAYLAEPRTYGITLRGSF

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882
G18-001-155	SP1FE13L00045F09	3,499,710	18,843	33,956

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.