CDS Information : SJA_C1-00180

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	16,264 / 17,601 / +
Location	16264..17601
Type	CDS
Length	1,338 bp (445 aa)

Product	cystathionine beta-lyase/cystathionine gamma-synthase
Gene name
Functional category	Intermedialy metabolism - metabolism of amino acids and related molecules
EC number	4.4.1.11
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q1NDE9_9SPHN Methionine gamma-lyase Alignment 2 E=1e-170 Q1GVW8_SPHAL Cystathionine gamma-lyase Alignment 3 E=1e-160 Q2N8K4_9SPHN Methionine gamma-lyase by acc 4 E=1e-121 Q92ND0_RHIME Putative methionine gamma-lyase Alignment 5 E=1e-120 Q8FYB9_BRUSU Methionine-gamma-lyase, putative Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (Family) PF01053   Cys_Met_Meta_PP PIRSF001434   Cystathionine gamma-synthase PTHR11808   TRANS-SULFURATION ENZYME FAMILY MEMBER IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain) G3DSA:3.40.640.10   no description IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (Domain) G3DSA:3.90.1150.10   no description IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain) SSF53383   PLP-dependent transferases
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	445 amino acids
molecular mass	47,727.49 Da
pI	5.33
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12.4 (55aa) 5.6 (25aa) 11.5 (51aa) 5.4 (24aa) 3.6 (16aa) 1.1 (5aa) 5.2 (23aa) 2.2 (10aa) 9.9 (44aa) 6.1 (27aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.8 (26aa) 0.7 (3aa) 2.5 (11aa) 1.8 (8aa) 2 (9aa) 3.6 (16aa) 2.5 (11aa) 5.8 (26aa) 4.3 (19aa) 8.1 (36aa)

>SJA_C1-00180 cystathionine beta-lyase/cystathionine gamma-synthase
ATGACCGGCGAAACCGAAGCCGACCTCACGGGCGCGGAGCCCACGCGCAACCGCCGCCGT
CCCAAGCAACCGATCATGGAGATTGAAGGCCGCAAGTTGAAGCCCGCGACGCTGATGATG
GGCCACGGCTATGACCCCACTTTGTCCGAAGGATCGCTGAAGCCGCCCATCTTCCTGACG
TCCACCTTCGCCTTCGAAAGCGCGGCGGCGGGCAAGCGGCATTTCGAAGGGGTGACGGGC
ATTCGCCCCGGCGGTGCGGAGGGCCTCGTCTATTCCCGCTTCAACGGCCCCAATCAGGAG
ATTGCGGAGGACCGGCTGTCGGTCTGGGAAGAGGCGGAGGACGCCCTGCTCTTTTCCAGC
GGCATGTCGGCCATCGCGACCACCCTGCTCGCCCTGGTGCAGCCGGGCGACGTGATCGTG
CATTCCGCGCCGCTCTATGCCGCGACCGAATCGCTGATCGGGCGCATATTGGGCAAGTTC
GGCGTGCAATGGCTGGATTTCCCCGCGGGCGCGACCGAGGAAGAGATTGGCGCGGTGATC
GAGAAGGCCAAGGGCCTGGGCCGCGTCGCGCTGATCTATCTGGAAAGTCCGGCCAATCCG
ACCAATGTGCTGGTCGACCTGGAAGCGGTAGTTGCGCGGCGCGACTTTTCCTTCGCAGGC
GAAGAACATCGCCCGCCCGTCGCCATCGACAACACCTTCCTCGGCCCGCTCTGGCTGCAT
CCGCTGAGCCATGGGGCCGATCTGGTCATCTACAGCCTGACCAAATATGCGGGCGGACAT
AGCGACCTGGTCGCTGGCGGCGTGCTGGGGTCCAATGCGCTGATCAACACGATCCGGCTG
ATGCGGAACACCATCGGCACGATCCTGGACCCGCATTCGGCCTGGATGCTGCTGCGGTCG
CTGGAGACGCTGGAACTGCGCATGAGCCGGGCGGGCGAGAATGCCGCCAGGGTCTGCTCC
TGGCTGAAGGACCAGCCGCAGGTGGAGAAGGTCGTCTATCTCGGCTTTCCGGAGACTGAG
CGGCAGGCCGACATATACCGTCGCCATTGCACGGGCGCGGGATCGACCTTCTCGCTCTAC
CTCAAGGGCGGCGAGGCGGAGGCCTTCGCCTTTCTGGACGCGCTCAAGATCGCGAAGCTC
GCCGTCAGCCTGGGGGGCACGGAAACGCTGGCGAGCCATCCCGCGGCGATGACGCATCTG
TCCGTCCCTGCCGAACGGAAGAAGGCGCTGGCGATCGGCGACAATATGGTGCGCATCTCC
ATCGGCTGCGAGGATGCGGAAGACCTGATCGCGGATTTCGCGCAGGCCTTGCGCGCGGTG
GAGGGAGCGGGCGGATGA


>SJA_C1-00180 cystathionine beta-lyase/cystathionine gamma-synthase
MTGETEADLTGAEPTRNRRRPKQPIMEIEGRKLKPATLMMGHGYDPTLSEGSLKPPIFLT
STFAFESAAAGKRHFEGVTGIRPGGAEGLVYSRFNGPNQEIAEDRLSVWEEAEDALLFSS
GMSAIATTLLALVQPGDVIVHSAPLYAATESLIGRILGKFGVQWLDFPAGATEEEIGAVI
EKAKGLGRVALIYLESPANPTNVLVDLEAVVARRDFSFAGEEHRPPVAIDNTFLGPLWLH
PLSHGADLVIYSLTKYAGGHSDLVAGGVLGSNALINTIRLMRNTIGTILDPHSAWMLLRS
LETLELRMSRAGENAARVCSWLKDQPQVEKVVYLGFPETERQADIYRRHCTGAGSTFSLY
LKGGEAEAFAFLDALKIAKLAVSLGGTETLASHPAAMTHLSVPAERKKALAIGDNMVRIS
IGCEDAEDLIADFAQALRAVEGAGG

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882
G18-001-155	SP1FE13L00045F09	3,499,710	18,843	33,956

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.