CDS Information : SJA_C1-00220

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	20,477 / 21,325 / +
Location	20477..21325
Type	CDS
Length	849 bp (282 aa)

Product	ABC-type transport system ATPase component LinL
Gene name	linL
Functional category	Cell envelope and cellular processes - transport / binding protein & lipoprotein
EC number
Note	ABC-type transport system involved in resistance to organic solvents, ATPase component / gamma-hexachlorocyclohexane degradation
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=1e-137 Q1NDE5_9SPHN ABC transporter related protein Alignment 2 E=1e-107 Q2G4E3_NOVAD ABC transporter related protein Alignment 3 E=1e-106 Q2ND88_9SPHN ABC transporter, ATP-binding protein by acc 4 E=1e-103 Q1GVX1_SPHAL ABC transporter related Alignment 5 E=1e-90 Q5NNR9_ZYMMO ABC transporter related protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003439 ABC transporter related (Domain) PS00211   ABC_TRANSPORTER_1 PS50893   ABC_TRANSPORTER_2 PD000006   ABC_transporter PF00005   ABC_tran IPR003593 AAA+ ATPase, core (Domain) SM00382   AAA IPR017871 ABC transporter, conserved site (Conserved_site) PS00211   ABC_TRANSPORTER_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	282 amino acids
molecular mass	30,709.95 Da
pI	4.98
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 11 (31aa) 6.7 (19aa) 11 (31aa) 6.7 (19aa) 2.8 (8aa) 0.7 (2aa) 4.3 (12aa) 1.4 (4aa) 9.9 (28aa) 3.5 (10aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.3 (15aa) 0.4 (1aa) 2.5 (7aa) 3.2 (9aa) 2.1 (6aa) 3.9 (11aa) 1.8 (5aa) 7.8 (22aa) 6.7 (19aa) 8.2 (23aa)

>SJA_C1-00220 ABC-type transport system ATPase component LinL
ATGGCGCAGGAGGAAGAAATCAGCGCCGAGGAAGCGCGAATCGAGGAGGCGGTCCAGCAT
GACGGCATCGCCATATCCGTCCGCAACCTGCGCAACAGCTTCGGCGATCAGGTGGTGCAT
GAGGGGCTGAACCTGGACGTGCGCAAGGGCGAGATATTGGGCGTGGTCGGCGGATCGGGC
ACCGGCAAGTCGGTGCTGATGCGCTCCATCATCGGCCTCCAGACCCCGGACGAGGGCGAA
ATCCACGTCTTCGGGGAATCGATGATCGGCCGGCTGGACAATGAGGCGCTGGCGATACGC
AAGCGGTGGGGCGTGCTGTTCCAGGGAGGGGCGCTCTTTTCGACGCTGACGGTGGCGGAG
AATGTCGAAGTGCCGATCCGCGAATATTATCCCAATATCGGCCCGAAGCTGCGCGACGAG
ATCGCCGCCTACAAGATCCGCCTGACCGGCCTGCCCGCCGAGGCCGGGCCGAAATATCCC
GCCGAATTGTCGGGCGGCATGAAGAAGCGCGCCGGGCTGGCGCGGGCGCTGGCGCTCGAC
CCGGACCTGCTGTTCCTGGATGAGCCGACGGCGGGGCTGGACCCTATCGGCGCGGCGGCC
TTCGACGATCAGACGCGGCGGTTGCAGCAGACGCTGGGGCTGACCGTCTTCCTCATCACC
CATGATCTCGACACGCTCTATTCGATCTGCGACCGGGTGGCGGTGCTGGCGGACAGGAAG
GTGACGGCGGTCGGCACTATCGATGAATTGCTGGCGACCGACCATCCCTGGATTCAGGAA
TATTTCAACGGCCCGCGCGGGCGCGCCGCGACGGCGGCGGTGGCCCGCGAGAAGGACAAG
AGGCGATAG


>SJA_C1-00220 ABC-type transport system ATPase component LinL
MAQEEEISAEEARIEEAVQHDGIAISVRNLRNSFGDQVVHEGLNLDVRKGEILGVVGGSG
TGKSVLMRSIIGLQTPDEGEIHVFGESMIGRLDNEALAIRKRWGVLFQGGALFSTLTVAE
NVEVPIREYYPNIGPKLRDEIAAYKIRLTGLPAEAGPKYPAELSGGMKKRAGLARALALD
PDLLFLDEPTAGLDPIGAAAFDDQTRRLQQTLGLTVFLITHDLDTLYSICDRVAVLADRK
VTAVGTIDELLATDHPWIQEYFNGPRGRAATAAVAREKDKRR

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.