CDS Information : SJA_C1-00230

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	21,329 / 22,291 / +
Location	21329..22291
Type	CDS
Length	963 bp (320 aa)

Product	ABC-type transport system periplasmic component LinM
Gene name	linM
Functional category	Cell envelope and cellular processes - transport / binding protein & lipoprotein
EC number
Note	ABC-type transport system involved in resistance to organic solvents, periplasmic component / gamma-hexachlorocyclohexane degradation
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=1e-161 Q1NDE4_9SPHN ABC-type transport system periplasmic component Alignment 2 E=1e-98 Q2G4E4_NOVAD Mammalian cell entry related protein Alignment 3 E=2e-95 Q1GVX2_SPHAL Mammalian cell entry related Alignment 4 E=5e-93 Q2ND87_9SPHN ABC-type transport system periplasmic component by acc 5 E=2e-84 Q5NNS0_ZYMMO Mammalian cell entry related domain protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003399 Mammalian cell entry related (Domain) PF02470   MCE
SignalP	Bacteria, Gram-negative
TMHMM	Transmembrane 1
SOSUI	Transmembrane 2

size of protein	320 amino acids
molecular mass	34,129.06 Da
pI	6.1
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.3 (33aa) 8.1 (26aa) 10.3 (33aa) 6.3 (20aa) 2.5 (8aa) 0.6 (2aa) 5.6 (18aa) 1.9 (6aa) 8.1 (26aa) 8.1 (26aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.9 (19aa) 0.6 (2aa) 4.1 (13aa) 4.7 (15aa) 0.9 (3aa) 4.7 (15aa) 0.3 (1aa) 5.9 (19aa) 4.7 (15aa) 6.3 (20aa)

>SJA_C1-00230 ABC-type transport system periplasmic component LinM
ATGGAAACCCGCTCCAACCATGTGCTGGTGGGCACGGTCACGCTGCTGTTGCTGGCGGCG
ATCATGATCGCGGCTTTCTGGTTCTCGCGCCTCTCCCAGGGCGACAATATGGAATATGAC
ATCTTCTTCAAACAGTCGGTCAACGGCCTGGCCAAGGGGTCCAGCGTCAACTATTCCGGC
GTCCCTTCCGGCCAGGTGGAGAAGATCGAACTCTGGAAGCGCGATCCCAGCTTCGTGAAG
GTGCGCATTTCGGTGAAGGAGGGCACGCCCGTCCTGCAGGGGACCACGGCGACCATCGCC
GGGGTGGGCTTTACCGGCGTGTCGGAAATCGTGCTGGACGGCGCGGTCAAGGGCGCGCCG
CCGATCGTCTGCCCGGCGGAAAACCCCCTCGCCTCCTGCCCCGATGGCGTGCCGGTGATC
CCGACCAAGCCGGGGGCGCTGGGCGAATTGCTGAACAACGCGCCGCAACTGCTGGAGCGG
CTGTCGACGCTGACCGAGCGGCTCACCGAATTGCTGAACGACAAGAATCAGCAGTCGATT
GCCGGCATCCTCGCCAATGTGGAGCGGATTTCCGGCTCGCTGGCCGACCGCAGCCCGGAA
ATCGCCGCGACGCTGGCCGAAGCGCGCATCGCCGTGCAGCGCACCGGCATCGCCGCCGAG
CAGATCGGCAAGCTGGCCGCCTCCACCGACGCCATGGTGAATGATGAGGGCCGCCCGCTG
CTGGCCGACCTGCGCAAGAGCATCCAGTCGGCGACGCGCAGCATCGACACGCTCGACAAG
ACCATTGCGGAGGCGCAGCCGGGCGTTCGCGCCTTCAGCAACCAGACCATGCCGGAGGTC
AACCAGCTGGTCCGCGACCTGCGCGAAATGTCGCGATCCTTCCGGGGCGTGGCGGAAAAA
CTCGACCAGCAGGGCGCGGGGTCCATCGTCGGATCGCCCAAGCTGCCCGATTACAAGCGA
TAA


>SJA_C1-00230 ABC-type transport system periplasmic component LinM
METRSNHVLVGTVTLLLLAAIMIAAFWFSRLSQGDNMEYDIFFKQSVNGLAKGSSVNYSG
VPSGQVEKIELWKRDPSFVKVRISVKEGTPVLQGTTATIAGVGFTGVSEIVLDGAVKGAP
PIVCPAENPLASCPDGVPVIPTKPGALGELLNNAPQLLERLSTLTERLTELLNDKNQQSI
AGILANVERISGSLADRSPEIAATLAEARIAVQRTGIAAEQIGKLAASTDAMVNDEGRPL
LADLRKSIQSATRSIDTLDKTIAEAQPGVRAFSNQTMPEVNQLVRDLREMSRSFRGVAEK
LDQQGAGSIVGSPKLPDYKR

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.