CDS Information : SJA_C1-00260

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	26,673 / 25,771 / -
Location	complement(25771..26673)
Type	CDS
Length	903 bp (300 aa)

Product	ParB-like protein
Gene name
Functional category	Other functions - miscellaneous
EC number
Note	putative transcriptional regulator
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=1e-130 Q1NDE1_9SPHN Chromosome partitioning protein Alignment 2 E=7e-96 Q1GP60_SPHAL Chromosome segregation DNA-binding protein Alignment 3 E=6e-85 Q5NL08_ZYMMO ParB-like partition protein Alignment 4 E=3e-81 Q2GC41_NOVAD Chromosome segregation DNA-binding protein Alignment 5 E=2e-76 Q2RN73_RHORT Chromosome segregation DNA-binding protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003115 ParB-like nuclease (Domain) PF02195   ParBc SM00470   no description SSF110849   ParB/Sulfiredoxin IPR004437 ParB-like partition protein (Domain) TIGR00180   parB_part: ParB-like partition proteins IPR004437 ParB-like partition protein (Family) TIGR00180   parB_part: ParB-like partition proteins
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	300 amino acids
molecular mass	32,897.53 Da
pI	7.37
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12.7 (38aa) 5.7 (17aa) 10.7 (32aa) 7 (21aa) 1.3 (4aa) 0.3 (1aa) 6 (18aa) 1.3 (4aa) 7.7 (23aa) 4.3 (13aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 2.3 (7aa) 0.7 (2aa) 1.7 (5aa) 6.3 (19aa) 1 (3aa) 4 (12aa) 3.3 (10aa) 9.7 (29aa) 6.3 (19aa) 7.7 (23aa)

>SJA_C1-00260 ParB-like protein
ATGAAATCGGCCAAGCGCCCCCATGGCCTTGGCCGGGGCCTGTCGGCGCTGCTCGGCGAT
GTGGCGCGGGAGGAGCCGGTCGCGCCCACCGCCGTCGCCCCGCCGTCCACCAAGGCGATC
CAGAGCATCGAAGTCGCGCTGATCCAGCCTCATCCCGAACAGCCCCGCCGCCACTTCGAC
GAGGGCGCGTTGCAGGAACTGGCCGACAGCATCGGCAAGCGCGGAGTGATCCAGCCGATC
ATCGTCCGTCCCCATGGCGGCGGGTTCCAGATCGTCGCGGGAGAACGCCGGTGGCGGGCG
GCGCAGCGCGCGCAGCTTCACCGCATCCCCGCCATCGTCAGGGATTTCGACGAGGCGGAA
ACGCTGGAAATCGCGCTGATCGAGAATATCCAGCGCGAAGACCTCAATCCGATCGAGGAG
GCGGAGGCCTATCGCAAGCTGATCGCGGAGTTCCAGCACAGCCAGGAGGCGCTGGCCCGG
CTGGTCGGCAAGTCGCGCAGCCATGTGGCGAACCTGATGCGCCTTCTCGATCTTCCCGCG
CCCGTTCAACGGCAGGTGATCGAACAAAAGCTCAGCATGGGCCATGCCCGCGCCCTGATC
GGCGCGCCGGATTGCGAAAATCTCGCCCGAACCGTCGAAGCCAAGGGCCTGTCGGTGCGC
GATACGGAACAACTCGTCCGCCGCGCCAAGAAGGGCGATGGCGCCCCCGGCCGCAAGCGC
CCCGCCGCCGCCAGGGACGATGATCCCGACATCGCGGCGCTGGAACAGCATCTGGCCGAC
ATATTGGGCGTGAAGGTCGACATCGACTATGCGCAGGGCGGCAACGGCACCCTGTCTTTG
CATTATTCCACGCTGGACCAGCTCGACATGCTGTGCCAGCGCCTTTCCGGGGAACGCATC
TGA


>SJA_C1-00260 ParB-like protein
MKSAKRPHGLGRGLSALLGDVAREEPVAPTAVAPPSTKAIQSIEVALIQPHPEQPRRHFD
EGALQELADSIGKRGVIQPIIVRPHGGGFQIVAGERRWRAAQRAQLHRIPAIVRDFDEAE
TLEIALIENIQREDLNPIEEAEAYRKLIAEFQHSQEALARLVGKSRSHVANLMRLLDLPA
PVQRQVIEQKLSMGHARALIGAPDCENLARTVEAKGLSVRDTEQLVRRAKKGDGAPGRKR
PAAARDDDPDIAALEQHLADILGVKVDIDYAQGGNGTLSLHYSTLDQLDMLCQRLSGERI

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882
G18-001-002	SP1FE13L00052E04	23,769	57,762	33,994

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.