CDS Information : SJA_C1-00330

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	32,451 / 33,419 / +
Location	32451..33419
Type	CDS
Length	969 bp (322 aa)

Product	NADPH2:quinone reductase
Gene name	qor
Functional category	Other functions - miscellaneous
EC number	1.6.5.5
Note	NADPH:quinone reductase or related Zn-dependent oxidoreductase
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=1e-127 Q1NDD4_9SPHN NADPH:quinone reductase Alignment 2 E=3e-80 Q7P1K0_CHRVO Quinone oxidoreductase Alignment 3 E=6e-78 Q9A212_CAUCR Quinone oxidoreductase Alignment 4 E=2e-76 Q34W42_9GAMM (Q34W42) Quinone oxidoreductase not found in DB 5 E=3e-76 Q11HN6_9RHIZ Alcohol dehydrogenase, zinc-binding protein by acc
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR002085 Alcohol dehydrogenase superfamily, zinc-containing (Family) PTHR11695   ALCOHOL DEHYDROGENASE RELATED IPR011032 GroES-like (Domain) SSF50129   GroES-like IPR013149 Alcohol dehydrogenase, zinc-binding (Domain) PF00107   ADH_zinc_N IPR013154 Alcohol dehydrogenase GroES-like (Domain) PF08240   ADH_N IPR016040 NAD(P)-binding domain (Domain) SSF51735   NAD(P)-binding Rossmann-fold domains G3DSA:3.40.50.720   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	322 amino acids
molecular mass	33,385.07 Da
pI	6.51
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.2 (49aa) 9.9 (32aa) 9.6 (31aa) 3.1 (10aa) 2.2 (7aa) 0.9 (3aa) 5 (16aa) 2.2 (7aa) 12.7 (41aa) 5.3 (17aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.3 (17aa) 1.2 (4aa) 0.6 (2aa) 2.2 (7aa) 2.8 (9aa) 1.9 (6aa) 2.5 (8aa) 7.1 (23aa) 5.6 (18aa) 4.7 (15aa)

>SJA_C1-00330 NADPH2:quinone reductase
ATGACGCAGGCATGGCGGATGGTGGCCCGCAGCCATGGCGGGCCGGAGGTGATCGCGCGG
GAAGGGTTCGACCCCGGCCTGCCGGGTGAAGGCGAATTGCTGATCGCGCAGGATGCCGTC
GGGCTGAATTTCATCGACACCTATTATCGCAGCGGCCTCTATCCCGCGCCGCTGCCGACG
CCGCTGGGCGCCGAGGGCGCCGGCCATGTCGCCGCCGTGGGTCCGGGCGTCGCCGGCTTT
GCCGTGGGCGACAAGGTGGGCTGTGCGGTCGGGCTGGGCGCCTATGCCACGCATCGTCTG
GTGCGCGCCGACCAGGCGGTGAGGATTCCGGATGGCGTCACGACGCAGGATGCGGCGGCC
ATGATGCTGAAGGGCATGACCGCCTGCTATCTGGCGGAGGACATCGTCACCCTGGAGGCC
GGGCAGTGCGCGCTGGTCCACGCCGCCGCCGGCGGCGTGGGTTCCGTGCTGGTGCCGTGG
CTGCGCGACAAGGGCGTGGTCGTGATCGCCCATTGCGGATCGGCGGAAAAGGCGGCGAAG
GTGGATGCCGAACATAGCCTGCACGGCGGCTTCGACAGCCTGGCCTCCGCCGTGCGGGAG
ATCACCGGGGGCCGCGGCGTCGACGTTGTCTATGACGGCGTGGGCAAGGATAGCTGGAGC
GCGTCGCTGGCCTCGCTCAGGCGGCGCGGCCTGATGGTCAGCTACGGCAACGCCTCCGGC
GCGGTGCCGCCGATCAGCCTGCTGGAACTCAGCCGGGGCGGGTCGCTCTACGTCACCCGC
CCGACATTGTTCGACTATATCGCCACTCCCGAAGAGTTGGCGCGAACCGCCGAAAGGCTG
TTCGACCGCATGGCGCGGGGCGTGGCGAGGACCGTCGTCGGCCAACGATTTCCCCTGGCC
GACGCGGCGGACGCGCACCGCGCGCTGGAGGCCCGGCAAACCACGGGAAGCACGCTGCTG
ATCCCCTGA


>SJA_C1-00330 NADPH2:quinone reductase
MTQAWRMVARSHGGPEVIAREGFDPGLPGEGELLIAQDAVGLNFIDTYYRSGLYPAPLPT
PLGAEGAGHVAAVGPGVAGFAVGDKVGCAVGLGAYATHRLVRADQAVRIPDGVTTQDAAA
MMLKGMTACYLAEDIVTLEAGQCALVHAAAGGVGSVLVPWLRDKGVVVIAHCGSAEKAAK
VDAEHSLHGGFDSLASAVREITGGRGVDVVYDGVGKDSWSASLASLRRRGLMVSYGNASG
AVPPISLLELSRGGSLYVTRPTLFDYIATPEELARTAERLFDRMARGVARTVVGQRFPLA
DAADAHRALEARQTTGSTLLIP

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882
G18-001-002	SP1FE13L00052E04	23,769	57,762	33,994

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.