CDS Information : SJA_C1-10030

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	1,002,301 / 999,254 / -
Location	complement(999254..1002301)
Type	CDS
Length	3,048 bp (1,015 aa)

Product	phage-related protein
Gene name
Functional category	Other functions - phage related
EC number
Note	phage-related minor tail protein
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=4e-69 Q2GAL6_NOVAD Putative uncharacterized protein Alignment 2 E=9e-08 Q11IZ8_9RHIZ Putative uncharacterized protein by acc 3 E=2e-07 Q1WDF5_9CAUD Minor tail protein Alignment 4 E=3e-07 Q30LB7_9CAUD Gp28 by acc 5 E=5e-07 Q4NC44_9MICC (Q4NC44) Similar to Chromosome segregation ATPases precursor not found in DB
HAMAP	No significant hit
InterPro	No significant hit
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	1015 amino acids
molecular mass	105,840.07 Da
pI	5.41
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.3 (165aa) 4.9 (50aa) 10 (102aa) 4.8 (49aa) 3.1 (31aa) 0.6 (6aa) 1.8 (18aa) 1.8 (18aa) 10.7 (109aa) 7.4 (75aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.4 (55aa) 0 (0aa) 3.5 (36aa) 6.4 (65aa) 1.6 (16aa) 5.3 (54aa) 0.3 (3aa) 5 (51aa) 6 (61aa) 5 (51aa)

>SJA_C1-10030 phage-related protein
ATGGCTTCTGGAGCCGTCTTCCCCGCCTTCATCCGTGCAACCTATCAGGAAACATCCGAT
GGGCTTCCCGCCTTCGAGCGGGCGATACAAACGTCCGTCAATCGAGCCCAGAAGGCGGCG
CAGGTCTCGATGGACCAGATAACACGCGAAATCTCTGACGCTTTGGTCGGGGGAAAGAGC
GATCTTGGCGCTTCCGATCTACGCGCGGCCGCCGCGGCAGCGGAAATGCGTGCTCAAGCC
GCCAGGAAGATAGCCACCTCCATGGCTGCGGCTGCGGCCGCCGAAAATGACTACAGCTTA
GCGACACAGGCCTCTATCATGGCGGCGCGCCGGCTTGCGGATGAAGAAGAAAATGCTGCT
CGCGTGGCGAACCTTCATGTCGCTGCAGTTGAACGCATCAATCAGGTTGCTCGGCAGAAC
AGCATATCGTTAACCGCCCTTTCCGATGGCAACATGATAGCCACCCTATCCAGCAACGCC
CATCGGCAGGCCCAGATGATGCTGGCCCAGCAGATGCAGGACGTAGCTATCCAGATGCAG
TTGGGTATCAACCCGCTCATGATCCTTACCCAGCAGGGCAGCCAAGCAGCATTCTCACTG
GCTCAGATGGGTGGCAAAGCCGCAGCGGTCGGTCGCTTCCTATCAAGCCCGTGGGTGGCC
GCTCTCGCCATCGCAGGGACAGCGCTGGGTTCGCTGCTTACGAAATCGGAAGATACTGCT
GACGCTCTGGAGAAGATCAAATTCTCCTCCGATGCTGTCGGCAGTGCGCAGGGCATCATG
GGTGATGCAATGGATCTGGCCACCGGGAAAATCACGACACAGCGGAAGGAGCTTATTGCC
CTCGCAATAGCTCAGTCGAAGGTTGGGGCCATCCAGGCACAAACGCGCGCAAATGCCCTC
CGCGGCGAAGTCCAATCACTCCAGGCGCCCACCACCGAATTGTCGGGTGGCTTTGGTGGC
GGCTTCGATGTCAGGCGCGTCGATGCAGGTGCGCGGGGTGCCATCTCAAGATCCTTCCTT
ACTGGCGAGATAGATGGCAAAACGGCGGTTCAGCGCCTTAATAACCTCCGCAAAGCTGGC
GCATTGACTGACGAAGCATTCGCCTCTGCTGCCAAATCCATTGCCAGCCTGGGAGTCGAG
CTGGCGAACGTAAAGACATTTGAAGCGGCGGAGCGGCTTCTCAATGGTGCAGGCACCAAC
GGAGATCGCGGCCTGTTATTGAAACCGAAAATTGATCGTTCGCCTAAGCCGAAAACGGAC
CCGCAGGTAAAAATAGCAAAGGATCTGTTCGAAGATCGACTCCAGGCTCAGGGTAACGTC
GGCAAGCTGGCGCAGGATATTATTGAGCGTCAGCTATCGTGGGGCAAAGATCAAGTCACT
GTTGGCGATCAGCTAATCCAGCAGGCGAAAGATCTGGCGTCTCTCGAAGAAGCCAGGGCG
CAGGGTGCTCAACAGGTTCTCGACGGCTATCTGCGGCAGCTCGACGCTTTGCAGCGCCTT
GGTGGGCTGGCGGGAGGTGCCGCCGGCATAGTGGGCGGCATTCTCGATGGCGGCAATTTC
TACGGTGTGAACGGAAAGGCGGGCGATATCCTGCGCGCCTTCTCCCCGATGGTGGGCGAG
GACGGCTGGAAGAACGTCACCGAGAAGCTGGACGAAATTTTCGGCGGCGACGGCGAATTC
AAGAAGGGTATGACGAAAATCCTGCAAGGCGCTGGCGCAGGTCAGACTGCCGCTGGCTTG
CTCCTTGGCGGGGCGAATAACGCGCTCACCAGCAGCATCGGAGGTGCGCTCGGTAACAAG
ATCGGCGAAAAGTTCCTGACCAAGCCCCTGAAAGATGCCTTTGGCGAAGCCTTCGGGGAC
TTTGCTGGCCCACTGGGCTCAATTGCTGGCGGCCTGCTAGGCGGCGCCCTGGGCGGTCTC
TTGTCGAAGCCCAAATGGGGCACCGCCGTCGTTACCGGCCAGGGCAGCGGCGATGTCACC
GTGGCGGGGAACAAGGCTGCTTATCGGTCCAACGCCAACCTGGCGGGGACTTCGATCCAG
AGCGGGCTGGACGCCATCGCGGAGCAGCTTGGCGCCGACATTGGCGACTATAATGTCAGC
ATCGGCCAGTATAAGGGCAAGTGGCGCGTCTCCACCACCGGCTATTCAGGCAAGCTCGGA
GGGAAGAATTGGGGCGCTAAAGGCATCACCGACTTCGGCAAGGAAGGCGGCGAGGACGCG
ATCAAGTTCGCCATTTCCGATGCGGTGAAGGACGGCGCGCTGCTGGGCCTGCGGGCGTCG
ACCCAGGCGCTGTTGACGCGGTCGAGCGACATCGAAGGCCAGCTTCAGAAGGCGCTGGAC
TTCGAAGGCGTGTTCCATCGGCTGAAGGAATATACCGACCCCGTCGGCGCGGCGCTGGAT
ACGCTCGACAAAGAGTTCACCCGGCTGAAGAAGATCTTCGAGGAAGCCGGCGCGTCGACC
GAAGAGTACGCTGCGCTTGAGCAGCTTTATGGCAAGGAGCGCGCCGCTGCCGTCAAGGAT
GCGGCGGAGAAGGTCACCGCATCGCTGAGGTCCCTGTTCGATGAACTGACCGTCGGCAAT
GACGCTCGGTCGCTCCGCGAGCGCCTGGCGGAGGCTCAGGCCAATTATAACCCGCTCGCC
CAGCGCGTGGCCGCCGGCGACACCTCCGCCTATGACGACTATTCCGATGCGGCCCGGACG
CTGCTCGACCTGCAAAGGCAGGTCTATGGATCCAGCGAGGATTATTTCAAGCTGCTGGAC
CAGGTGACGGCGCTGACGAAGACGCGCATCGACGCCGAATCCAACGTCGCTTCCATCTCC
GCGGCGCGGGACAGCATCTTCACCAGCGAGTCGGCCGCCGCGCCGGTGGTCTCGGCCACG
GAAGCCCAGACGCAGCAAATTGTGTCAGCGCTCAATTCCAACAATCAGGCGATGCTATCG
CAGATGCAGGTGCAGACCGAAAATCTTGTTGCGGTTAGCAGGCTGCTCGCCAGTTTTCGC
AGCACCAGCCCCGGCAGTATCGCGTCACCGGCACGACAAAACTTCTGA


>SJA_C1-10030 phage-related protein
MASGAVFPAFIRATYQETSDGLPAFERAIQTSVNRAQKAAQVSMDQITREISDALVGGKS
DLGASDLRAAAAAAEMRAQAARKIATSMAAAAAAENDYSLATQASIMAARRLADEEENAA
RVANLHVAAVERINQVARQNSISLTALSDGNMIATLSSNAHRQAQMMLAQQMQDVAIQMQ
LGINPLMILTQQGSQAAFSLAQMGGKAAAVGRFLSSPWVAALAIAGTALGSLLTKSEDTA
DALEKIKFSSDAVGSAQGIMGDAMDLATGKITTQRKELIALAIAQSKVGAIQAQTRANAL
RGEVQSLQAPTTELSGGFGGGFDVRRVDAGARGAISRSFLTGEIDGKTAVQRLNNLRKAG
ALTDEAFASAAKSIASLGVELANVKTFEAAERLLNGAGTNGDRGLLLKPKIDRSPKPKTD
PQVKIAKDLFEDRLQAQGNVGKLAQDIIERQLSWGKDQVTVGDQLIQQAKDLASLEEARA
QGAQQVLDGYLRQLDALQRLGGLAGGAAGIVGGILDGGNFYGVNGKAGDILRAFSPMVGE
DGWKNVTEKLDEIFGGDGEFKKGMTKILQGAGAGQTAAGLLLGGANNALTSSIGGALGNK
IGEKFLTKPLKDAFGEAFGDFAGPLGSIAGGLLGGALGGLLSKPKWGTAVVTGQGSGDVT
VAGNKAAYRSNANLAGTSIQSGLDAIAEQLGADIGDYNVSIGQYKGKWRVSTTGYSGKLG
GKNWGAKGITDFGKEGGEDAIKFAISDAVKDGALLGLRASTQALLTRSSDIEGQLQKALD
FEGVFHRLKEYTDPVGAALDTLDKEFTRLKKIFEEAGASTEEYAALEQLYGKERAAAVKD
AAEKVTASLRSLFDELTVGNDARSLRERLAEAQANYNPLAQRVAAGDTSAYDDYSDAART
LLDLQRQVYGSSEDYFKLLDQVTALTKTRIDAESNVASISAARDSIFTSESAAAPVVSAT
EAQTQQIVSALNSNNQAMLSQMQVQTENLVAVSRLLASFRSTSPGSIASPARQNF

NBRC No.	clone name	start	stop	length(bp)
G18-001-045	SP1FE13L00029A12	984,090	1,020,178	36,089

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.