CDS Information : SJA_C1-10130

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	1,014,459 / 1,010,203 / -
Location	complement(1010203..1014459)
Type	CDS
Length	4,257 bp (1,418 aa)

Product	DNA-directed RNA polymerase subunit beta'
Gene name	rpoC
Functional category	Information pathways - RNA synthesis - - RNA elongation
EC number
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q1NA05_9SPHN DNA-directed RNA polymerase subunit beta' RNA polymerase subunit beta' Transcriptase subunit beta' Alignment 2 E=0 RPOC_NOVAD DNA-directed RNA polymerase subunit beta' RNA polymerase subunit beta' Transcriptase subunit beta' Alignment 3 E=0 Q1GT24_SPHAL DNA-directed RNA polymerase subunit beta' RNA polymerase subunit beta' Transcriptase subunit beta' by acc 4 E=0 Q2N5Q5_9SPHN DNA-directed RNA polymerase subunit beta' RNA polymerase subunit beta' Transcriptase subunit beta' by acc 5 E=0 RPOC_ZYMMO DNA-directed RNA polymerase subunit beta' RNA polymerase subunit beta' Transcriptase subunit beta' Alignment
HAMAP Database:HAMAP:20061004	MF_01322   RPOC
InterPro Database:interpro:16.0	IPR000722 RNA polymerase, alpha subunit (Domain) G3DSA:2.40.40.30   no description PF00623   RNA_pol_Rpb1_2 IPR006592 RNA polymerase, N-terminal (Domain) SM00663   no description IPR007066 RNA polymerase Rpb1, domain 3 (Domain) PF04983   RNA_pol_Rpb1_3 IPR007080 RNA polymerase Rpb1, domain 1 (Domain) PF04997   RNA_pol_Rpb1_1 G3DSA:3.90.1120.10   no description IPR007081 RNA polymerase Rpb1, domain 5 (Domain) PF04998   RNA_pol_Rpb1_5 IPR007083 RNA polymerase Rpb1, domain 4 (Domain) PF05000   RNA_pol_Rpb1_4 IPR012754 DNA-directed RNA polymerase, subunit beta-prime (Family) TIGR02386   rpoC_TIGR: DNA-directed RNA polymerase, bet
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	1418 amino acids
molecular mass	156,857.42 Da
pI	6.09
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8.5 (121aa) 7.1 (100aa) 9.6 (136aa) 6.8 (96aa) 2.6 (37aa) 0.5 (7aa) 4.7 (66aa) 3.2 (46aa) 7.9 (112aa) 4.7 (66aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.2 (74aa) 1 (14aa) 2.8 (40aa) 4.5 (64aa) 2.2 (31aa) 6.6 (94aa) 1.4 (20aa) 6.5 (92aa) 6.3 (89aa) 8 (113aa)

>SJA_C1-10130 DNA-directed RNA polymerase subunit beta'
ATGAACGAACTGACGAACTTCGCCAATCCGATCCAGAAGCCGGAAACCTTCGACCAGATC
CAGATCGGCCTTGCCTCTCCGGAGCGCATCCGCAGCTGGTCCTTCGGCGAGATCAAGAAG
CCGGAAACCATCAACTACCGCACCTTCAAGCCGGAACGGGACGGCCTGTTCTGCGCCCGT
ATCTTCGGTCCGATCAAGGACTATGAATGCCTGTGCGGCAAGTACAAGCGCATGAAGTAC
AAGGGCATCGTCTGCGAGAAGTGCGGTGTCGAAGTCACGGTGTCGAAGGTCCGCCGCGAG
CGGATGGGCCATATCGAACTCGCCGCCCCGGTCGCGCATATCTGGTTCCTGAAGTCGCTC
CCCAGCCGCATCGGCCTGCTGCTCGACATGCAGTTGAAGCAGCTTGAGCGCGTCCTCTAC
TTCGAATCCTACATCGTCACCGAGCCGGGCCTGACTCCGCTGGAGAAGTACCAGCTTCTG
ACCGAGGACGAACTGCTCGACGCGCAGGACGAATATGGCGAGGACGCCTTCTCCGCCGGG
ATCGGCGCGGAGGCGGTCAAGCAGATGCTGATGGACCTCGACCTGGAGGGCGAGAAGCAG
GTGCTGCTGGACGAGTTGGCCGTCACCAAGTCGGAATTGAAGCCCAAGAAGATCATCAAG
CGCCTCAAGGTCGTTGAGAGCTTCCTGGAATCGGGCAATCGGCCTGAATGGATGATCCTG
GACGTGGTTCCTGTGATCCCGCCGGAACTGCGCCCGCTGGTCCCGCTGGACGGCGGCCGC
TTCGCGACGTCGGACCTCAACGACCTCTACCGCCGCGTCATCAACCGCAACAACCGTTTG
AAGCGGCTGATGGAACTGCGCGCCCCGGACATCATCGTCCGCAACGAAAAGCGCATGTTG
CAGGAGGCGGTCGACGCCCTGTTCGACAATGGCCGCCGCGGCCGCGTCATCACCGGCGCG
AACAAGCGTCCGCTGAAGTCGCTGTCCGACATGCTGAAGGGCAAGCAGGGCCGCTTCCGC
CAGAACCTGCTCGGCAAGCGCGTCGACTATTCGGGCCGTTCGGTCATCGTGACCGGCCCG
GAATTGAAGCTGCACCAGTGCGGCCTGCCGAAGAAGATGGCGCTCGAACTGTTCAAGCCC
TTCATCTACGCCCGCCTCGACGCCAAGGGTCTTTCCATGACCCTGAAGCAGGCCAAGAAG
TGGGTCGAGAAGGAGCGCAAGGAAGTCTGGGACATCCTGGACGAGGTGATCCGCGAGCAT
CCGGTGATGCTGAACCGCGCGCCGACGCTCCACCGCCTCGGCATCCAGGCGTTCGAGCCG
GTCCTCATTGAAGGCAAGGCGATCCAGCTTCACCCGCTGGTCTGCTCGGCCTTCAACGCC
GACTTCGACGGCGACCAGATGGCCGTTCACGTGCCGCTTTCGCTGGAAGCGCAGCTTGAA
GCCCGCGTGCTGATGATGTCGACCAACAACATCCTCAGCCCCGCAAACGGCAAGCCGATC
ATCGTTCCGTCGCAGGACATGGTTCTGGGCATCTATTATCTGTCGATGGAGCGCGAGGGC
GAGCCGGGCGAAGGCATGCTGCTGGCCGACATGCAGGAGGTGCATCAGGCGCTCTATGCC
AAGGCGGTGACGCTGCACTCCAAGATCATCAGCCGGGTGCCGCAGACCGACGAAGCCGGC
AACCAGTATATGAAGCGGTTTGAAACCACGCCGGGCCGCATGCTGCTGGGCGAATGCCTG
CCCAAGAGCCACAAGGTGCCCTTCGACGTCGTCAACCGCCTTCTGACCAAGAAGGAAATC
GGGGACGTCATCGACCAGGTCTATCGCCACACCGGCCAGAAGGACACGGTGCTGTTCGCC
GACGCCATCATGGCGCTGGGCTTCCGCCACGCGTTCCAGGCCGGCATCAGCTTCGGCAAG
GACGACATGGTGATCCCGGATTCGAAGACCGCGATGGTCGACGAAACCAAGGCGCTGGTG
GCCGACTATGAGCAGCAATATCAGGACGGCCTGATCACCCAGCAGGAAAAGTACAACAAG
GTGATCGACGCCTGGAGCCGTTGCGGCGACCAGGTCGCGAACGCCATGATGGACGAAATC
CGCGCCCAGCCCAAGGACCCGAATACGGGCCGCATGGCGCCGATCAACTCCATCTACATG
ATGGCGCATTCCGGTGCCCGTGGTTCGCAGGCGCAGATGAAGCAGCTTGCCGGCATGCGC
GGCCTGATGGCCAAGCCGTCGGGTGAGATCATCGAAACGCCGATCATCTCGAACTTCAAG
GAAGGCCTGACCGTCCTTGAATATTTCAACTCCACCCACGGCGCCCGCAAGGGTCTGGCC
GACACCGCGCTCAAGACGGCGAACTCGGGTTACCTGACCCGCCGTCTGGTCGACGTCAGC
CAGGATTGCACCATCGTCGAAGAGGACTGCGGCACCGACAAGGCGCTGGAGATGAAGGCC
ATCGTCCAGGGCGGCAGCGTCATCGCCTCGCTGGGCGAGCGCATCCTGGGCCGCACCACG
GCGCAGGACATCGTCGACAGCAAGGACGGTTCGGTCATCGTGCCGATCGGCACGCTGCTC
GACGAAGCGCTCGTGGCGCAGATCGAGGCCATCGGCACGCAGTCGGTGAAGATCCGCAGC
CCGCTGATCTGCGAAAGCAAGATGGGCGTCTGCGGCAAGTGCTACGGCCGCGACCTCGCT
CGCGGCACCCCGGTCAATATCGGCGAAGCGGTCGGCGTCATCGCGGCGCAGTCCATCGGC
GAGCCGGGCACGCAGCTTACCATGCGGACCTTCCACATCGGCGGCGCGGCGAACTTCAAC
GAAACGTCGAACCTGGAAGCCATGTCGGACGGCACGATCGAACTGCGCGACATGCCGACC
ATCACCGACAAGAACGGTCGCCGCCTCAGCCTCGCCCGCAACGGCGAGATCGCGATCATC
GACTCCGAGGGCCGCGAGCGCGAAACGCACCGCCTGCCCTACGGCGCCACCATCCTGTTC
GCGGATGGCGATGCCGTGAAGAAGGGCGAGCGCTTCGCCGAGTGGGATCCCTTCACCATG
CCGGTGATCACGGAAAAGCCGGGCATCGTGAAATATCAGGATCTGATCGACGGCAAGACG
CTGACCGAGCAGACCGACGAAGCCACCGGCATCGCCCAGCGCGTGGTGACGGAGCATCGC
GGTTCCGCCCGCACCAAGGAGGATCTGCGTCCGCGCCTCACCCTGCTGGACGACCAGTCG
GGCGAAGCCGCTCGCTACATGCTGGCGGTGGGCGCGACCCTGTCGGTGGACGACGGCGCG
CAGGTGCAGGCCGGTGACGTGCTGGCGCGTGTCAGCCGCGAAGCGGCCAAGACTCGCGAC
ATCACCGGCGGTCTGCCGCGCGTCGCCGAACTGTTCGAAGCCCGCAAGCCCAAGGACAAT
GCGATCATCGCCAAGGTGTCGGGCCGCGTCCAGTTCCTCAAGGATTACAAGGCGAAGCGC
AAGATCGCCATCAATCCCGAGGATGGTAGCGAGCCGGTCGAATACCTCATCCCCAAGAGC
AAGGTGATCGACGTCCAGGAAGGCGACTATGTGAAGCGCGGCGACAATCTGATCGGTGGT
TCGCCCGACCCGCACGACATTCTGGAGGTGCTGGGCATCGAGCCGCTGGCCGAATATCTG
GTTGCCGAAATCCAGGAAGTCTATCGCTTGCAGGGCGTGAAGATCAACGACAAGCACATC
GAGACGATCGTTCGCCAGATGCTGCAAAAGGTCGAGATCACCGTGTCCGGCGACACCACG
CTGCTGGTGGGCGAGCAGGTCGACCGCGAGGAGATGGAGGAGATCAACGCGAAGCTCCAG
CCCGGCTTCCAGCCGGCGGAGGGCAAGCCGGTGCTGCTCGGCATCACCAAGGCGTCGCTG
CAGACCCGCAGCTTCATCTCGGCGGCGTCCTTCCAGGAAACCACCCGCGTCCTCACGGAA
GCGGCGGTTCAGGGCAAGAAGGACACGCTGGTGGGCCTGAAGGAGAATGTCATCGTCGGC
CGCCTGATCCCGGCGGGCACTGGCGCGGGCATGAACCGCATGCGGGTCGCCGCCTCGTCG
CGCGACGCGGCGATGCGGGCCGCGCTGCGCGCCTCCAGCCAGGTTGATCTGATCGCGCCC
AAGACGGCTGCCGAGGAGCATGCCGCCGAACTGCGCCAGGGTCCGGAAGCCGCCATCGGC
GACGATCCGCTGGCCGTCGTCCAGGGTGAGGATTTCACCACTGAGGACATGGAATAA


>SJA_C1-10130 DNA-directed RNA polymerase subunit beta'
MNELTNFANPIQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQVLLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALYA
KAVTLHSKIISRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKTAMVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPNTGRMAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEEDCGTDKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSVIVPIGTLLDEALVAQIEAIGTQSVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEAMSDGTIELRDMPT
ITDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDAVKKGERFAEWDPFTM
PVITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEHRGSARTKEDLRPRLTLLDDQS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGSEPVEYLIPKSKVIDVQEGDYVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEITVSGDTT
LLVGEQVDREEMEEINAKLQPGFQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAEEHAAELRQGPEAAIGDDPLAVVQGEDFTTEDME

NBRC No.	clone name	start	stop	length(bp)
G18-001-045	SP1FE13L00029A12	984,090	1,020,178	36,089
G18-001-046	SP1FE13L00047D10	1,008,480	1,045,620	37,141

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.