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CDS Information : SJA_C1-10130

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1

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Overview 
Genome

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Organism Sphingobium japonicum UT26S (= NBRC 101211)
Replicon chromosome1
Start / Stop / Direction 1,014,459 / 1,010,203 / -
Location complement(1010203..1014459)
Type CDS
Length 4,257 bp (1,418 aa)

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Product DNA-directed RNA polymerase subunit beta'
Gene name rpoC
Functional category Information pathways
- RNA synthesis
- - RNA elongation
EC number
Note
KEGG pathway
Sequence feature
References

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BLASTP
Database:UniProtKB:8.8
1E=0Q1NA05_9SPHNDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
Alignment
2E=0RPOC_NOVADDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
Alignment
3E=0Q1GT24_SPHALDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
by acc
4E=0Q2N5Q5_9SPHNDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
by acc
5E=0RPOC_ZYMMODNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
Alignment
HAMAP
Database:HAMAP:20061004
 [11-1367]  9.789 MF_01322
MF_01322   RPOC
InterPro
Database:interpro:16.0
IPR000722 RNA polymerase, alpha subunit (Domain)
 [347-489]  3.1e-31 G3DSA:2.40.40.30
G3DSA:2.40.40.30   no description
 [345-487]  4.6e-82 PF00623
PF00623   RNA_pol_Rpb1_2
IPR006592 RNA polymerase, N-terminal (Domain)
 [236-515]  9.7e-181 SM00663
SM00663   no description
IPR007066 RNA polymerase Rpb1, domain 3 (Domain)
 [490-643]  3.4e-48 PF04983
PF04983   RNA_pol_Rpb1_3
IPR007080 RNA polymerase Rpb1, domain 1 (Domain)
 [14-343]  1e-163 PF04997
PF04997   RNA_pol_Rpb1_1
 [13-346]  7.7e-126 G3DSA:3.90.1120.10
G3DSA:3.90.1120.10   no description
IPR007081 RNA polymerase Rpb1, domain 5 (Domain)
 [762-1308]  3.3e-92 PF04998
PF04998   RNA_pol_Rpb1_5
IPR007083 RNA polymerase Rpb1, domain 4 (Domain)
 [672-760]  3.4e-30 PF05000
PF05000   RNA_pol_Rpb1_4
IPR012754 DNA-directed RNA polymerase, subunit beta-prime (Family)
 [19-1354]  TIGR02386
TIGR02386   rpoC_TIGR: DNA-directed RNA polymerase, bet
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 1418 amino acids
molecular mass 156,857.42 Da
pI 6.09
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.5
(121aa)
7.1
(100aa)
9.6
(136aa)
6.8
(96aa)
2.6
(37aa)
0.5
(7aa)
4.7
(66aa)
3.2
(46aa)
7.9
(112aa)
4.7
(66aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(74aa)
1
(14aa)
2.8
(40aa)
4.5
(64aa)
2.2
(31aa)
6.6
(94aa)
1.4
(20aa)
6.5
(92aa)
6.3
(89aa)
8
(113aa)

open this sectionSequence