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CDS Information : SJA_C1-10130

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close this sectionGenomic map

Display Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1

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Overview 
Genome
Clone

close this sectionLocation

Organism Sphingobium japonicum UT26S (= NBRC 101211)
Replicon chromosome1
Start / Stop / Direction 1,014,459 / 1,010,203 / -
Location complement(1010203..1014459)
Type CDS
Length 4,257 bp (1,418 aa)

close this sectionAnnotation

Product DNA-directed RNA polymerase subunit beta'
Gene name rpoC
Functional category Information pathways
- RNA synthesis
- - RNA elongation
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:8.8
1E=0Q1NA05_9SPHNDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
Alignment
2E=0RPOC_NOVADDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
Alignment
3E=0Q1GT24_SPHALDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
by acc
4E=0Q2N5Q5_9SPHNDNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
by acc
5E=0RPOC_ZYMMODNA-directed RNA polymerase subunit beta'
RNA polymerase subunit beta'
Transcriptase subunit beta'
Alignment
HAMAP
Database:HAMAP:20061004
 [11-1367]  9.789 MF_01322
MF_01322   RPOC
InterPro
Database:interpro:16.0
IPR000722 RNA polymerase, alpha subunit (Domain)
 [347-489]  3.1e-31 G3DSA:2.40.40.30
G3DSA:2.40.40.30   no description
 [345-487]  4.6e-82 PF00623
PF00623   RNA_pol_Rpb1_2
IPR006592 RNA polymerase, N-terminal (Domain)
 [236-515]  9.7e-181 SM00663
SM00663   no description
IPR007066 RNA polymerase Rpb1, domain 3 (Domain)
 [490-643]  3.4e-48 PF04983
PF04983   RNA_pol_Rpb1_3
IPR007080 RNA polymerase Rpb1, domain 1 (Domain)
 [14-343]  1e-163 PF04997
PF04997   RNA_pol_Rpb1_1
 [13-346]  7.7e-126 G3DSA:3.90.1120.10
G3DSA:3.90.1120.10   no description
IPR007081 RNA polymerase Rpb1, domain 5 (Domain)
 [762-1308]  3.3e-92 PF04998
PF04998   RNA_pol_Rpb1_5
IPR007083 RNA polymerase Rpb1, domain 4 (Domain)
 [672-760]  3.4e-30 PF05000
PF05000   RNA_pol_Rpb1_4
IPR012754 DNA-directed RNA polymerase, subunit beta-prime (Family)
 [19-1354]  TIGR02386
TIGR02386   rpoC_TIGR: DNA-directed RNA polymerase, bet
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 1418 amino acids
molecular mass 156,857.42 Da
pI 6.09
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.5
(121aa)
7.1
(100aa)
9.6
(136aa)
6.8
(96aa)
2.6
(37aa)
0.5
(7aa)
4.7
(66aa)
3.2
(46aa)
7.9
(112aa)
4.7
(66aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(74aa)
1
(14aa)
2.8
(40aa)
4.5
(64aa)
2.2
(31aa)
6.6
(94aa)
1.4
(20aa)
6.5
(92aa)
6.3
(89aa)
8
(113aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G18-001-045 SP1FE13L00029A12 984,090 1,020,178 36,089
G18-001-046 SP1FE13L00047D10 1,008,480 1,045,620 37,141

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.