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CDS Information : SJA_C1-12900

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close this sectionGenomic map

Display Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1

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Overview 
Genome
Clone

close this sectionLocation

Organism Sphingobium japonicum UT26S (= NBRC 101211)
Replicon chromosome1
Start / Stop / Direction 1,275,109 / 1,277,598 / +
Location 1275109..1277598
Type CDS
Length 2,490 bp (829 aa)

close this sectionAnnotation

Product ATP-dependent DNA ligase
Gene name lig
Functional category Information pathways
- DNA replication
EC number 6.5.1.1
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:8.8
1E=0Q2G7N8_NOVADATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleAlignment
2E=0Q1NHJ6_9SPHNPutative uncharacterized proteinAlignment
3E=0Q2NBM4_9SPHNPutative uncharacterized proteinby acc
4E=0Q92M95_RHIMEProbable ATP-dependent DNA ligaseAlignment
5E=0Q1YEJ9_9RHIZATP dependent DNA ligaseby acc
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000977 ATP-dependent DNA ligase (Family)
 [234-530]  7e-29 PTHR10459
PTHR10459   ATP-DEPENDENT DNA LIGASE FAMILY
IPR002755 DNA primase, small subunit (Family)
 [666-787]  9.1e-21 PF01896
PF01896   DNA_primase_S
IPR012309 ATP dependent DNA ligase, C-terminal (Domain)
 [433-505]  0.0041 PF04679
PF04679   DNA_ligase_A_C
IPR012310 ATP dependent DNA ligase, central (Domain)
 [235-415]  3.1e-35 PF01068
PF01068   DNA_ligase_A_M
 [324-449]  10.391 PS50160
PS50160   DNA_LIGASE_A3
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [418-537]  3.9e-08 G3DSA:2.40.50.140
G3DSA:2.40.50.140   no description
IPR014143 DNA ligase D (Domain)
 [244-814]  8.2e-232 TIGR02776
TIGR02776   NHEJ_ligase_prk: DNA ligase D
IPR014144 DNA ligase D, 3'-phosphoesterase domain (Domain)
 [7-163]  5.4e-104 TIGR02777
TIGR02777   LigD_PE_dom: DNA ligase D, 3'-phosphoestera
IPR014145 DNA polymerase LigD, polymerase domain (Domain)
 [546-792]  5.7e-135 TIGR02778
TIGR02778   ligD_pol: DNA polymerase LigD, polymerase d
IPR014146 DNA polymerase LigD, ligase region (Domain)
 [235-533]  1.4e-119 TIGR02779
TIGR02779   NHEJ_ligase_lig: DNA polymerase LigD, ligas
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 829 amino acids
molecular mass 90,982.62 Da
pI 9.58
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.8
(106aa)
5.4
(45aa)
8.9
(74aa)
4.3
(36aa)
3.7
(31aa)
1.9
(16aa)
5.2
(43aa)
2.2
(18aa)
9.8
(81aa)
4.9
(41aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.6
(30aa)
0.7
(6aa)
1.9
(16aa)
2.9
(24aa)
1.6
(13aa)
5.3
(44aa)
2.5
(21aa)
9.2
(76aa)
6.5
(54aa)
6.5
(54aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G18-001-057 SP1FE13L00033A05 1,260,908 1,291,959 31,052

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.