CDS Information : SJA_C1-12900

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	1,275,109 / 1,277,598 / +
Location	1275109..1277598
Type	CDS
Length	2,490 bp (829 aa)

Product	ATP-dependent DNA ligase
Gene name	lig
Functional category	Information pathways - DNA replication
EC number	6.5.1.1
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q2G7N8_NOVAD ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module Alignment 2 E=0 Q1NHJ6_9SPHN Putative uncharacterized protein Alignment 3 E=0 Q2NBM4_9SPHN Putative uncharacterized protein by acc 4 E=0 Q92M95_RHIME Probable ATP-dependent DNA ligase Alignment 5 E=0 Q1YEJ9_9RHIZ ATP dependent DNA ligase by acc
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000977 ATP-dependent DNA ligase (Family) PTHR10459   ATP-DEPENDENT DNA LIGASE FAMILY IPR002755 DNA primase, small subunit (Family) PF01896   DNA_primase_S IPR012309 ATP dependent DNA ligase, C-terminal (Domain) PF04679   DNA_ligase_A_C IPR012310 ATP dependent DNA ligase, central (Domain) PF01068   DNA_ligase_A_M PS50160   DNA_LIGASE_A3 IPR012340 Nucleic acid-binding, OB-fold (Domain) G3DSA:2.40.50.140   no description IPR014143 DNA ligase D (Domain) TIGR02776   NHEJ_ligase_prk: DNA ligase D IPR014144 DNA ligase D, 3'-phosphoesterase domain (Domain) TIGR02777   LigD_PE_dom: DNA ligase D, 3'-phosphoestera IPR014145 DNA polymerase LigD, polymerase domain (Domain) TIGR02778   ligD_pol: DNA polymerase LigD, polymerase d IPR014146 DNA polymerase LigD, ligase region (Domain) TIGR02779   NHEJ_ligase_lig: DNA polymerase LigD, ligas
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	829 amino acids
molecular mass	90,982.62 Da
pI	9.58
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12.8 (106aa) 5.4 (45aa) 8.9 (74aa) 4.3 (36aa) 3.7 (31aa) 1.9 (16aa) 5.2 (43aa) 2.2 (18aa) 9.8 (81aa) 4.9 (41aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.6 (30aa) 0.7 (6aa) 1.9 (16aa) 2.9 (24aa) 1.6 (13aa) 5.3 (44aa) 2.5 (21aa) 9.2 (76aa) 6.5 (54aa) 6.5 (54aa)

>SJA_C1-12900 ATP-dependent DNA ligase
ATGGCCGATGCCGATCCGCTCAGCGCCTATAACCGCAAGCGCGATTTCAGCCGGACTCGC
GAACCGGCGGGCAGGCGCGGCCGCAGGCAGGGCAATGGCTTCATCGTGCAGAAGCATGAC
GCGACCCGCCTGCATTACGATTTCCGCCTGGAAATGGACGGCGTGCTTAAGAGCTGGGCG
GTGACGCGAGGGCCCAGCATCGATCCCGCGGACAAGCGGCTGGCCGTCCGAACCGAGGAT
CACCCGCTGTCCTATGCGACGTTCGAGGGGACGATCCCCAAGGGCGAATATGGCGGTGGC
ACGGTCATGCTCTGGGACGAGGGCACCTGGGAGCCGGTCCCCGGCAAGAGCGCGAGCGAC
CTTGAGAAAGGGCATCTCCACTTCATCCTGCACGGCGAGCGGATGCGCGGCGAATGGCTG
CTGATCCGGCTGAAGCCGCGAGGTCGGGAAAAGAGGGAAAACTGGCTGCTGCGCAAGATC
GAGGATGCCCATGCCGGCAGCGCTGACGATCTTATCGCCCGCAATCTGACAAGCATCAGG
AGCGGCCGCACCATGGCGGAAATCGCGGCGGGCGCGCCGGCCATTTCGCTGAAGGGGAAG
AAGGGAAAGGCCTTCGACGCGGCGATGGCGCAGGCCGACCGGGCCGTCCCGGCGAAGAGG
CGCGCCAGGGCGGGATCGGACCGCCCGCCGCCCTTCCAGCCGCCGCAACTGGCGACCCTG
GTCGACGCCGTGCCCACGGGCAATGGCTGGATGCACGAGATCAAATATGACGGCTATCGC
TGCCTGGTTTCGGCATCGGGCGGGAAGGTCAGGATTTTCACGCGGTCCGGCCTCGACTGG
ACGGATCGCTTCGCGCCCCTCCCCGCCGAAATCGCGGCGATGAACCTGCCCGGCGCCCTG
ATCGATGGGGAGGTCGTCGCGCTCGGCAGCGATGGAAATCCGGATTTCTCCACGCTCCAG
CAGCTGTTGAAGGGGGAGGGGAAGGCGGCGCTGCACCTGTTCGCCTTCGACCTGCTCCAA
CTGGACGGGCAGGATCTGACCGCCATGCCCAATATCGGCCGGAAGGAAAAGCTGGCCGCC
CTGTTGGGCGAAGGTGCCGCGCATGTCCATGTCGGGGACCATGTCGTCGGGGCGGGGGAA
AGGCTGTTCCAGGCCATGTGCGGCGCGGGGCAGGAGGGGATCATTTCAAAGCGCGCCGAC
GCCCCCTATCGCGGCGCGCGCACGAAGAATTGGCTGAAGGTCAAATGCACCCGCCGCCAG
GAATTCGTCATCGTCGGCTGGACCCTGAGCGGCGCCAGCGGGCGCTCCATCCGCAACCTG
CTGCTCGGCCAGCGGGAGGGGGAGGGGCTGGTCTATGCGGGAAAGGTCGGCACGGGCTTC
AACGCGGCCAACAGCGCCGGGCTGGTCGCGGCGCTCGGCAAGCGGGGGCGCAAGACCGCC
GCGCTCAGCGTGCCGCGCAGCGAAAGCCGGGGCGCCCAATGGGTTCGCCCCGATCTGGTC
GCGGAAATCGCCTTTGCCGAATTCACGGCGGAAAATATCGTCCGCCATGCCAGCTTCCTG
GGCCTGCGCGAGGACAAGGCGGCCAGGGAGGTGCGACGCGAGGAAGCCATGCCGACGCCT
GAAGCCCAAAGTTCGATCCAGATCAGCAATCCCGACCGCCTGATCTTCCCGGAGGCGAAG
ATCACCAAGGGCGAGCTTGCCGAATATTACGCCCGCATGGGCGCGGCGATGCTGCCCTGG
ATAGCCCGTCGGCCGATCAGCCTGGTCCGCTGTCCGCAGGGCCGCGCGAAGAAATGCTTT
TTCCAGAAGCATGACAGCGGCAGTTTCGGCGACCATGTCAAACATGTCCCGATCCGCGAG
AAGGAGGGGAATGAGGAGGATTATCTTTATATAGAGGATAGCGATGGCCTGTTGGCCTGC
GTCCAGATGGGGGCGATCGAATTTCACGGCTGGGGTTCGGGCGTCGCGGATGTCGAGCGG
CCGGATCGCATGATCTTCGACCTCGATCCGGACGAAGGGCTGGACTTCGAGGATGTGAAG
AAGGCGGCGCGGGACATCCGCCGGGCGCTGGAGGATATGGGCCTTGCCAGCTTCGCCATG
CTGTCGGGCGGCAAGGGCATCCACGTCGTCGTGCCGCTGACGCCGCAGGCGCAATGGCCG
GAGGTCAAGGATTTCGCTGACCGCTTCGCCCGTGCCCTCGCCGCCCAGGAACCGGATCGC
TTCACCGCGACGATGAGCAAGGCGAAGCGCAAGGGCCGCATCTTCATCGACTGGCTGCGC
AACCAGCGCGGCGCCACGGCGGTGCTGCCCTATGTGGTGCGCGCCCGCGAGCTTGCGTCC
GTCGCCGCCCCCGTCACCTGGGAAGAGTTGGACGGGATCGAGAGCGCGGCGCACTTCACG
GTGAAGGACGCCGCCCTCCTGCTCGACCGCGCCTCCTCGCGAGACTTGCGCGGCTGGGGG
GAAGCGCACCAGCCGCTGCCCGCTCATTAG


>SJA_C1-12900 ATP-dependent DNA ligase
MADADPLSAYNRKRDFSRTREPAGRRGRRQGNGFIVQKHDATRLHYDFRLEMDGVLKSWA
VTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSASD
LEKGHLHFILHGERMRGEWLLIRLKPRGREKRENWLLRKIEDAHAGSADDLIARNLTSIR
SGRTMAEIAAGAPAISLKGKKGKAFDAAMAQADRAVPAKRRARAGSDRPPPFQPPQLATL
VDAVPTGNGWMHEIKYDGYRCLVSASGGKVRIFTRSGLDWTDRFAPLPAEIAAMNLPGAL
IDGEVVALGSDGNPDFSTLQQLLKGEGKAALHLFAFDLLQLDGQDLTAMPNIGRKEKLAA
LLGEGAAHVHVGDHVVGAGERLFQAMCGAGQEGIISKRADAPYRGARTKNWLKVKCTRRQ
EFVIVGWTLSGASGRSIRNLLLGQREGEGLVYAGKVGTGFNAANSAGLVAALGKRGRKTA
ALSVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAAREVRREEAMPTP
EAQSSIQISNPDRLIFPEAKITKGELAEYYARMGAAMLPWIARRPISLVRCPQGRAKKCF
FQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSDGLLACVQMGAIEFHGWGSGVADVER
PDRMIFDLDPDEGLDFEDVKKAARDIRRALEDMGLASFAMLSGGKGIHVVVPLTPQAQWP
EVKDFADRFARALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARELAS
VAAPVTWEELDGIESAAHFTVKDAALLLDRASSRDLRGWGEAHQPLPAH

NBRC No.	clone name	start	stop	length(bp)
G18-001-057	SP1FE13L00033A05	1,260,908	1,291,959	31,052

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.