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CDS Information : SJA_C1-18760

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close this sectionGenomic map

Display Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1

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Overview 
Genome
Clone

close this sectionLocation

Organism Sphingobium japonicum UT26S (= NBRC 101211)
Replicon chromosome1
Start / Stop / Direction 1,883,017 / 1,881,803 / -
Location complement(1881803..1883017)
Type CDS
Length 1,215 bp (404 aa)

close this sectionAnnotation

Product putative aldehyde dehydrogenase
Gene name
Functional category Intermedialy metabolism
- metabolism of carbohydrates and related molecules
- - specific pathways
EC number 1.2.1.3
Note NAD-dependent aldehyde dehydrogenase
remnant
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:8.8
1E=3e-95Q73U55_MYCPAPutative uncharacterized proteinAlignment
2E=9e-93Q13LR0_BURXLPutative aldehyde dehydrogenaseAlignment
3E=8e-92Q9AB15_CAUCRAldehyde dehydrogenaseAlignment
4E=1e-91Q0XEA2_9BURK(Q0XEA2) Aldehyde dehydrogenasenot found in DB
5E=5e-91Q36UY6_RHOPA(Q36UY6) IMP dehydrogenase/GMP reductase:Aldehyde dehydrogenasenot found in DB
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR002086 Aldehyde dehydrogenase (Domain)
 [37-376]  3.6e-65 PF00171
PF00171   Aldedh
IPR012303 NAD-dependent aldehyde dehydrogenase (Family)
 [45-395]  8.7e-53 PIRSF000147
PIRSF000147   NAD-dependent aldehyde dehydrogenase
IPR015590 Aldehyde Dehydrogenase_ (Domain)
 [73-327]  1.5e-110 PTHR11699
PTHR11699   ALDEHYDE DEHYDROGENASE-RELATED
IPR016161 Aldehyde/histidinol dehydrogenase (Domain)
 [11-327]  8.2e-96 SSF53720
SSF53720   ALDH-like
IPR016162 Aldehyde dehydrogenase, N-terminal (Domain)
 [10-311]  1.8e-91 G3DSA:3.40.605.10
G3DSA:3.40.605.10   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 404 amino acids
molecular mass 42,391.19 Da
pI 8.5
aa composition
AlaValLeuIlePheTrpProMetGlySer
17.8
(72aa)
6.2
(25aa)
9.2
(37aa)
5.4
(22aa)
2.7
(11aa)
1.2
(5aa)
7.4
(30aa)
4.2
(17aa)
7.4
(30aa)
7.2
(29aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4
(16aa)
1.7
(7aa)
2.2
(9aa)
2.7
(11aa)
1
(4aa)
2.7
(11aa)
2.2
(9aa)
6.4
(26aa)
4
(16aa)
4.2
(17aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G18-001-083 SP1FE13L00025E12 1,869,501 1,907,793 38,293

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.