CDS Information : SJA_C1-22860

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	2,301,944 / 2,303,878 / +
Location	2301944..2303878
Type	CDS
Length	1,935 bp (644 aa)

Product	1-deoxy-D-xylulose-5-phosphate synthase
Gene name	dxs
Functional category	Intermedialy metabolism - metabolism of coenzymes
EC number	2.2.1.7
Note	deoxyxylulose-5-phosphate synthase
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q1NE37_9SPHN 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase Alignment 2 E=0 Q2GC13_NOVAD 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase by acc 3 E=0 Q1GQK9_SPHAL 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase by acc 4 E=0 Q2N6U5_9SPHN 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase by acc 5 E=0 Q5NN52_ZYMMO 1-deoxy-D-xylulose-5-phosphate synthase 1 1-deoxyxylulose-5-phosphate synthase 1 1-deoxyxylulose-5-phosphate synthase 1 1-deoxyxylulose-5-phosphate synthase 1 by acc
HAMAP Database:HAMAP:20061004	MF_00315   DXS
InterPro Database:interpro:16.0	IPR005474 Transketolase, N-terminal (Domain) PS00801   TRANSKETOLASE_1 IPR005475 Transketolase, central region (Domain) PF02779   Transket_pyr IPR005476 Transketolase, C-terminal (Domain) PF02780   Transketolase_C IPR005477 Deoxyxylulose-5-phosphate synthase (Family) TIGR00204   dxs: 1-deoxy-D-xylulose-5-phosphate synthas PIRSF005462   Deoxyxylulose-5-phosphate synthase IPR009014 Transketolase, C-terminal-like (Domain) SSF52922   TK C-terminal domain-like G3DSA:3.40.50.920   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	644 amino acids
molecular mass	68,722.38 Da
pI	6.7
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.5 (87aa) 7.3 (47aa) 9.9 (64aa) 4.8 (31aa) 3.3 (21aa) 0.3 (2aa) 5.1 (33aa) 2.3 (15aa) 10.1 (65aa) 4 (26aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.7 (37aa) 0.8 (5aa) 2.5 (16aa) 3.3 (21aa) 2.3 (15aa) 3.4 (22aa) 2.8 (18aa) 7 (45aa) 6.5 (42aa) 5 (32aa)

>SJA_C1-22860 1-deoxy-D-xylulose-5-phosphate synthase
ATGTCCTTGATGAACGATCGCCCCTCCACTCCGCTGCTCGACCAGGTCGTCTGGCCCGCG
GACCTGCGCAAGCTGCAACCCGACCGGCTTCGGCAACTGGCCGACGAACTGCGGCAGGAA
GTGATTTCCGCCGTCGGCGTGACCGGCGGCCATCTGGGGTCCGGGCTGGGCGTGGTGGAG
CTGACCACGGCGATCCATTATGTGTTCGATACGCCCAACGACAAGCTGGTCTGGGATGTC
GGCCACCAATGCTATCCGCACAAGATATTGACCGGGCGGCGGGACCGCATCCGCACCTTG
CGCCAGGGCGGCGGCCTCAGCGGCTTCACCAAGCGGGCGGAGAGCGAGTACGACCCCTTC
GGCGCGGCGCATAGCTCGACCTCGATCAGCGCGGCGCTGGGCTTTGCCGTGGCGAACAGG
ATGCAGGGCAAGCCCGGCAAGGGCATCGCTGTCATCGGCGACGGCTCCATGTCGGCGGGC
ATGGCCTATGAGGCGATGAACAATGCGCGGGAGGCCGGAAATCGGCTGATCGTCATCCTG
AACGACAATGACATGTCCATCGCTCCTCCGGTCGGCGGGCTGTCGGCCTATCTGGCGCGG
CTGGTGTCGAGCCGGGAGTTCCTCGGCCTGCGCGACCTTGCCAAGCGGCTGGCGCGGCGG
CTGCCCCGCCCGCTGCACAATGCGGCGCGCAAGACCGACGAATTCGCGCGCGGCATGGCG
ATGGGCGGGACTTTGTTCGAGGAACTGGGCTTCTACTATGTCGGGCCGATCGACGGGCAT
AATCTGGACCAGTTGATCCCGGTGCTGGAAAATGTCCGCGACGCGGCGGAGGGGCCGTGC
CTGGTCCATGTCGTGACGCAGAAGGGCAAGGGCTATGCCCCGGCCGAGGCGGCGGCGGAC
AAATATCATGGCGTGCAGAAGTTCGACGTCATCACCGGCGCGCAGGCCAAGGCGCCTCCG
GGGCCGCCCAGCTATACCGGCGTGTTCGCCAAGGCGCTGATCGCGGAGGCGGAGCGCGAC
CCCGCCATATGCGCGATCACCGCCGCCATGCCTTCGGGGACGGGACTGGACAAGTTCGGC
GCGGCCTTCCCCGACCGGACCTTCGATGTCGGCATTGCCGAGCAGCATGCCGTGACCTTC
GCGGCGGGGCTGGCGGCGCAGGGGATGCGGCCATTCTGCGCCATCTATTCGACCTTCCTG
CAACGCGCCTACGACCAGGTCGTGCATGACGTGGCGATCCAGAACCTGCCGGTGCGCTTC
GCCATCGACCGCGCCGGGCTGGTGGGGGCGGACGGTTCGACCCATGCGGGCAGCTTCGAC
GTGACCTATCTTGCCAGCCTGCCGAATTTCGTCGTCATGGCGGCAGCGGACGAGGCGGAA
CTGGTCCATATGGTCCACACCTGCGCCGTGCATGACGATGGGCCGATCGCGGTGCGCTAC
CCGCGCGGCAACGGCACGGGCATCGCCCTGCCCGCAACGCCGGAAAGGCTGGAAATCGGC
AAGGGCAGGATCGTGCGGGAGGGGCGGCAGGTCGCGATCCTGTCGCTCGGAACCCGGCTG
GAGGAGGCGCTGAAGGCCGCGGAGACGCTGGAGGCGAAGGGGCTGTCCACGACGGTGGCG
GACCTGCGCTTTGCCAAGCCGCTGGACGAAGCGCTGATCCGCAGGCTGCTGACGACCCAT
GAAGTCGCCGTCACCATCGAGGAAGGTGCCGTCGGCGGCCTGGGCGCGCATGTGCTGACG
ATGGCGAGCGACCAGGGATTGATCGACAATGGCCTGAAGCTGCGGACCATGCGCCTGCCC
GACATCTTTCAGGATCAGGACAAGCCGGAAAAGCAATATGCCGACGCCCGTCTGGATGCG
GGAGCCATTGTCGACACGGTGCTGACGGCGCTCCGCCATAACAGCACCGGCATCGGGACC
GAAGCGCGGGCCTGA


>SJA_C1-22860 1-deoxy-D-xylulose-5-phosphate synthase
MSLMNDRPSTPLLDQVVWPADLRKLQPDRLRQLADELRQEVISAVGVTGGHLGSGLGVVE
LTTAIHYVFDTPNDKLVWDVGHQCYPHKILTGRRDRIRTLRQGGGLSGFTKRAESEYDPF
GAAHSSTSISAALGFAVANRMQGKPGKGIAVIGDGSMSAGMAYEAMNNAREAGNRLIVIL
NDNDMSIAPPVGGLSAYLARLVSSREFLGLRDLAKRLARRLPRPLHNAARKTDEFARGMA
MGGTLFEELGFYYVGPIDGHNLDQLIPVLENVRDAAEGPCLVHVVTQKGKGYAPAEAAAD
KYHGVQKFDVITGAQAKAPPGPPSYTGVFAKALIAEAERDPAICAITAAMPSGTGLDKFG
AAFPDRTFDVGIAEQHAVTFAAGLAAQGMRPFCAIYSTFLQRAYDQVVHDVAIQNLPVRF
AIDRAGLVGADGSTHAGSFDVTYLASLPNFVVMAAADEAELVHMVHTCAVHDDGPIAVRY
PRGNGTGIALPATPERLEIGKGRIVREGRQVAILSLGTRLEEALKAAETLEAKGLSTTVA
DLRFAKPLDEALIRRLLTTHEVAVTIEEGAVGGLGAHVLTMASDQGLIDNGLKLRTMRLP
DIFQDQDKPEKQYADARLDAGAIVDTVLTALRHNSTGIGTEARA

NBRC No.	clone name	start	stop	length(bp)
G18-001-101	SP1FE13L00050B06	2,280,854	2,324,596	43,743

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.