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CDS Information : SJA_C1-22860

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close this sectionGenomic map

Display Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1

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Overview 
Genome
Clone

close this sectionLocation

Organism Sphingobium japonicum UT26S (= NBRC 101211)
Replicon chromosome1
Start / Stop / Direction 2,301,944 / 2,303,878 / +
Location 2301944..2303878
Type CDS
Length 1,935 bp (644 aa)

close this sectionAnnotation

Product 1-deoxy-D-xylulose-5-phosphate synthase
Gene name dxs
Functional category Intermedialy metabolism
- metabolism of coenzymes
EC number 2.2.1.7
Note deoxyxylulose-5-phosphate synthase
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:8.8
1E=0Q1NE37_9SPHN1-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
Alignment
2E=0Q2GC13_NOVAD1-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
by acc
3E=0Q1GQK9_SPHAL1-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
by acc
4E=0Q2N6U5_9SPHN1-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
by acc
5E=0Q5NN52_ZYMMO1-deoxy-D-xylulose-5-phosphate synthase 1
1-deoxyxylulose-5-phosphate synthase 1
1-deoxyxylulose-5-phosphate synthase 1
1-deoxyxylulose-5-phosphate synthase 1
by acc
HAMAP
Database:HAMAP:20061004
 [12-632]  44.199 MF_00315
MF_00315   DXS
InterPro
Database:interpro:16.0
IPR005474 Transketolase, N-terminal (Domain)
 [38-57]  PS00801
PS00801   TRANSKETOLASE_1
IPR005475 Transketolase, central region (Domain)
 [321-487]  2.1e-59 PF02779
PF02779   Transket_pyr
IPR005476 Transketolase, C-terminal (Domain)
 [500-623]  2e-29 PF02780
PF02780   Transketolase_C
IPR005477 Deoxyxylulose-5-phosphate synthase (Family)
 [13-632]  1.8e-238 TIGR00204
TIGR00204   dxs: 1-deoxy-D-xylulose-5-phosphate synthas
 [10-635]  PIRSF005462
PIRSF005462   Deoxyxylulose-5-phosphate synthase
IPR009014 Transketolase, C-terminal-like (Domain)
 [494-633]  1.4e-37 SSF52922
SSF52922   TK C-terminal domain-like
 [499-633]  4.4e-27 G3DSA:3.40.50.920
G3DSA:3.40.50.920   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 644 amino acids
molecular mass 68,722.38 Da
pI 6.7
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.5
(87aa)
7.3
(47aa)
9.9
(64aa)
4.8
(31aa)
3.3
(21aa)
0.3
(2aa)
5.1
(33aa)
2.3
(15aa)
10.1
(65aa)
4
(26aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.7
(37aa)
0.8
(5aa)
2.5
(16aa)
3.3
(21aa)
2.3
(15aa)
3.4
(22aa)
2.8
(18aa)
7
(45aa)
6.5
(42aa)
5
(32aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G18-001-101 SP1FE13L00050B06 2,280,854 2,324,596 43,743

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.