CDS Information : SJA_C1-22960

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	2,312,964 / 2,312,278 / -
Location	complement(2312278..2312964)
Type	CDS
Length	687 bp (228 aa)

Product	phosphoglycerate mutase
Gene name	gpm
Functional category	Intermedialy metabolism - metabolism of carbohydrates and related molecules - - main glycolytic pathways
EC number	5.4.2.1
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=1e-117 Q1NE46_9SPHN 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Alignment 2 E=1e-103 Q1GP88_SPHAL 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase by acc 3 E=1e-101 GPMA_ZYMMO 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Alignment 4 E=2e-98 Q2G373_NOVAD 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase by acc 5 E=2e-88 Q2N682_9SPHN 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase by acc
HAMAP Database:HAMAP:20061004	MF_01039   GPMA
InterPro Database:interpro:16.0	IPR001345 Phosphoglycerate/bisphosphoglycerate mutase (Active_site) PS00175   PG_MUTASE IPR001345 Phosphoglycerate/bisphosphoglycerate mutase (Family) PS00175   PG_MUTASE IPR005952 Phosphoglycerate mutase 1 (Family) TIGR01258   pgm_1: phosphoglycerate mutase PTHR11931   PHOSPHOGLYCERATE MUTASE IPR013078 Phosphoglycerate mutase (Domain) PF00300   PGAM
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	228 amino acids
molecular mass	25,988.40 Da
pI	5.72
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 7.5 (17aa) 5.3 (12aa) 11.4 (26aa) 5.3 (12aa) 1.8 (4aa) 3.1 (7aa) 6.1 (14aa) 0.9 (2aa) 6.6 (15aa) 4.8 (11aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.1 (14aa) 0.4 (1aa) 3.1 (7aa) 2.2 (5aa) 3.1 (7aa) 5.7 (13aa) 2.2 (5aa) 8.3 (19aa) 7.9 (18aa) 8.3 (19aa)

>SJA_C1-22960 phosphoglycerate mutase
ATGCCCACGCTCGTCCTCATCCGCCACGGCCAGTCGGCCTGGAACCTCGAAAACCGCTTC
ACCGGCTGGTGGGACGTGGACGTGACCGAAAAGGGCGCGGAGGAAGCCCGCGCCGCCGGC
CGCCTGCTCAGGGAAAAGGGGCTGGACTTCGACCAGTGCTACACCTCCGTCCAGACCCGC
GCCATCAAGACGCTGAATCTGGTGCTGGAGGAGATGGGCCGCCTCTGGCTGCCGGTCGAA
AAGGACTGGCGCCTCAACGAACGTCACTATGGCGGCCTCACCGGCCTCAACAAGGCGGAG
ACGGCGGCCAAGCATGGCGACGATCAGGTGAAGATCTGGCGCCGCAGCTTCGACACGCCC
CCGCCGCCGCTGGAGCCGGGCAGCGAGTTCGACCTGTCGAAGGACCGCCGTTACGCGGGC
ATCCCCATCCCCTCGACGGAATCGCTGAAGGACACCATCGCCCGCGTCCTGCCCTATTGG
GAGGAACGCATCGCCCCCGACCTGAAGGCGGGCAAGCGCGTCGTCATCTCCGCCCACGGC
AACTCGCTCCGCGCGCTGGTGAAGCACCTCTCCAACATCCCGGACGACGAGATCACCGAA
CTGGAAATCCCGACCGGCCAGCCGATCGTCTACGACCTGGCCGACGACCTGACGGCCAAG
GATCGCTACTACCTGTCGGAACGCTGA


>SJA_C1-22960 phosphoglycerate mutase
MPTLVLIRHGQSAWNLENRFTGWWDVDVTEKGAEEARAAGRLLREKGLDFDQCYTSVQTR
AIKTLNLVLEEMGRLWLPVEKDWRLNERHYGGLTGLNKAETAAKHGDDQVKIWRRSFDTP
PPPLEPGSEFDLSKDRRYAGIPIPSTESLKDTIARVLPYWEERIAPDLKAGKRVVISAHG
NSLRALVKHLSNIPDDEITELEIPTGQPIVYDLADDLTAKDRYYLSER

NBRC No.	clone name	start	stop	length(bp)
G18-001-101	SP1FE13L00050B06	2,280,854	2,324,596	43,743
G18-001-102	SP1FE13L00051A11	2,309,869	2,342,701	32,833

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.