CDS Information : SJA_C1-22980

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	2,315,281 / 2,317,644 / +
Location	2315281..2317644
Type	CDS
Length	2,364 bp (787 aa)

Product	exoribonuclease R
Gene name
Functional category	Information pathways - RNA modification
EC number	3.1.13.1
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q1N8L8_9SPHN Exoribonuclease R Alignment 2 E=0 Q5NNJ0_ZYMMO Ribonuclease R Alignment 3 E=0 Q1GTS6_SPHAL RNAse R Alignment 4 E=0 Q2G6Y5_NOVAD RNAse R Alignment 5 E=0 Q2NAH6_9SPHN Exoribonuclease R by acc
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001900 Ribonuclease II and R (Domain) PF00773   RNB PS01175   RIBONUCLEASE_II IPR003029 S1, RNA binding (Domain) PF00575   S1 SM00316   no description PS50126   S1 IPR004476 RNase II and RNase R, bacteria (Family) TIGR00358   3_prime_RNase: VacB and RNase II family 3'- PTHR23355:SF9   RIBONUCLEASE R IPR008994 Nucleic acid-binding, OB-fold (Domain) SSF50249   Nucleic acid-binding proteins IPR011805 Ribonuclease R, bacterial (Family) TIGR02063   RNase_R: ribonuclease R IPR012340 Nucleic acid-binding, OB-fold (Domain) G3DSA:2.40.50.140   no description IPR022966 Ribonuclease II/R, conserved site (Conserved_site) PS01175   RIBONUCLEASE_II
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	787 amino acids
molecular mass	86,401.89 Da
pI	9.02
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.1 (103aa) 7.5 (59aa) 9.1 (72aa) 4.8 (38aa) 2.8 (22aa) 0.9 (7aa) 6.4 (50aa) 2 (16aa) 7.8 (61aa) 4.7 (37aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.3 (26aa) 0.4 (3aa) 1.1 (9aa) 1.9 (15aa) 2.2 (17aa) 5.3 (42aa) 2.4 (19aa) 9.8 (77aa) 7.5 (59aa) 7 (55aa)

>SJA_C1-22980 exoribonuclease R
ATGGCATCCACCGAAAAGAAGAAGAAAACCGACTCCGCACGGACCAAGGTTCGGCCCGCG
GGCTTTCCGACGCGCGAGCAGGTGATGGATTTCATCGCCACGTCCGACCAGCCGGCCGGA
AAGCGGGAGATCGCAAAGGCCTTCGGCCTCAAGGGGCAGGAGAAGATCGCGCTCAAGGCG
CTGCTCAAGGACATGGCGGACGAAGGGCTGATCGACATCGGCCCGGCGCGGGCCTTCCAC
AAGATGGGCGGCGTGCCCAAGGTCACGGTGCTGCGGATCGTCGATGTCGACGACACCACC
CTGATCGCCACGCCCGAACGCTGGGAGGCGGAGGGACAGCCCGCACCCCGGCTGCGCATC
GTGGAGCGGGGAAAGCGCGGCGCGCTGACCATAGGCGACCGCATCCTGGCGCGGACGGAG
GAAGCCGGGCGCGGCTGGGTCGCGCATCCGATGAAGAAACTCGCCAAGGCCAGCGAGGAA
TTGCTGGGCGTGGTCGAGGAAGGCGACGGCGGCAAGCTGTGGCTGCGCCCGGTCGACAAG
CGCATCCGCCGGGACACGCCGATTTCGGACGCCGGCGCGGCGAAGAAGGGCGACCTGGTG
CTGGCCGAGCCGGTGGGGCGCCCGCCCCGGATCACGGCACGGGTCACGGACATATTGGGC
GATCCCTTCGCGCCACGCAGCTTCAGCCTGATCGCCATCCACAAGCATGGCATTCCCCAT
GTCTTTTCCGAGCGGGTCGAGGAAGAGGCGGTGGCCGCTTCCAGCCTGGCCCTGCATGAG
GACAAGCGGGAGGATTTGCGGCATTTGCCCATCGTCGCCATCGATCCGGTCGATGCGCGG
GACCATGACGATGCGGTCTGGGCCGCGCCGGACGACGATCCGGCCAATTCAGGCGGTTAC
AAGGCGATCGTCGCGATTGCGGACGTCAGCTATTATGTGCGGCCGGGCAGCGCGCTGGAC
CGGGAAGCGAGGAAGCGCGGGAACAGCGTCTATTTTCCCGATCTCGTGGTGCCGATGCTG
CCGCACCAGCTTTCGTCCGACATGTGTTCCTTGCGGGCGGGCGAGGATCGGGCGGCGATG
GCCTGTCACCTTGTCCTTGACGCTTCGGGCAAGGTGAAGAACTGGCGCTTCTCCCGCGCG
GTGATCCGGGTGGCGGCGGTGCTGGCCTATGAGGATGCGCAGGCGGCCATCGATGGGACG
TTGGATATTGCGGCTGATGACGCGCCGGCTCGCCCCCCGACCCCCTCCCGCCTGCGGGCG
GGGGAGTTGCTGGAGACGGCGCTGAAGCCGCTCTGGGCCTGCTGGGCGTTGCTGCGCAAG
GCGCGGGACAAGCGGGAGCCGCTGGCGCTGGACCTGCCGGAACGGCGGGTGGTGCTGGAC
GACTATGGCAAGATCGTCAGCGTCGCGGTGCGCGAGCGGCTCGACGCGCATATGCTGATC
GAGGATTATATGATCGCCGCCAATGTCGCGGCGGCCAAGGCGCTGGAGGCCAAGAAGGCG
CCGGTCATGTACCGCGTCCATGAACCGCCGAGCCGGGACAAGCTGGTCGCGTTGAAGGAC
TATCTGGCGACCTTCGGCATCGAATTCGCCCTGGGGCAGGTGGTGAGGCCTGCGACCTTC
AACCGGCTGATCGAACGGGTCGGGGAAGCGGAGGAAAAGCCCCAGATCATGGAGCAGATC
CTGCGCAGCCAGACCCAGGCCTATTATGCGCCGTCCAATCTGGGCCATTTCGGGCTGGCC
TTGGGTTCCTATGCCCATTTCACCTCGCCCATCCGGCGCTATGCGGACCTGCTGGTGCAC
CGGGCGCTGGTGGGCGCCTATGGGCTGGAACTGCCCGCGCCCAAGGGGGACATTCCCGAC
CGATCCTCGCTGAGCGGCGAGGATATGGAGAATATGGGCCGCGTGGGCGAGATGATCAGC
CAGCATGAACGCCGCGCCATGGAGGCGGAGCGGGAGACCATCGACCGCTATGTCGCGGCC
TTCCTGGCGGCGCATGTCGGCGATCTGGTGGAGGCGCGGATCACCGGCGTGCAGAGCTTC
GGCTTCTTCGCCACGGTGGAGGGGCTGGGCGGCGATGGGCTGGTGCCGGTGTCGACGCTG
GGCGACGAACGCTTCTTCTATGACGAGGTCGGCCGGGCGCTGGAGGGCGTGGAGAGCGGG
GATCGCTACACGGTCGGGCAGCGGCTGGCATTGCGGCTGGCGGAGGCGGACCCGATCAAC
GGCTCGCTGCGCTTCGAACTGCCCGACGCCCCGCCCCAGCGGCCGAGCTTCAAGAAGGAC
CGGGTGCGCCCCGGCAGCGCCCGGCGCGGGCGGCCCGCCAATGTCCGGCACATCGGATCG
AAAAGGGGCAAGCATCGGCGGTAA


>SJA_C1-22980 exoribonuclease R
MASTEKKKKTDSARTKVRPAGFPTREQVMDFIATSDQPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRLRI
VERGKRGALTIGDRILARTEEAGRGWVAHPMKKLAKASEELLGVVEEGDGGKLWLRPVDK
RIRRDTPISDAGAAKKGDLVLAEPVGRPPRITARVTDILGDPFAPRSFSLIAIHKHGIPH
VFSERVEEEAVAASSLALHEDKREDLRHLPIVAIDPVDARDHDDAVWAAPDDDPANSGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGEDRAAM
ACHLVLDASGKVKNWRFSRAVIRVAAVLAYEDAQAAIDGTLDIAADDAPARPPTPSRLRA
GELLETALKPLWACWALLRKARDKREPLALDLPERRVVLDDYGKIVSVAVRERLDAHMLI
EDYMIAANVAAAKALEAKKAPVMYRVHEPPSRDKLVALKDYLATFGIEFALGQVVRPATF
NRLIERVGEAEEKPQIMEQILRSQTQAYYAPSNLGHFGLALGSYAHFTSPIRRYADLLVH
RALVGAYGLELPAPKGDIPDRSSLSGEDMENMGRVGEMISQHERRAMEAERETIDRYVAA
FLAAHVGDLVEARITGVQSFGFFATVEGLGGDGLVPVSTLGDERFFYDEVGRALEGVESG
DRYTVGQRLALRLAEADPINGSLRFELPDAPPQRPSFKKDRVRPGSARRGRPANVRHIGS
KRGKHRR

NBRC No.	clone name	start	stop	length(bp)
G18-001-101	SP1FE13L00050B06	2,280,854	2,324,596	43,743
G18-001-102	SP1FE13L00051A11	2,309,869	2,342,701	32,833

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.