CDS Information : SJA_C1-27490

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	2,753,062 / 2,754,462 / +
Location	2753062..2754462
Type	CDS
Length	1,401 bp (466 aa)

Product	amino acid transporter
Gene name
Functional category	Cell envelope and cellular processes - transport / binding protein & lipoprotein
EC number
Note	basic amino acid/polyamine antiporter, APA family
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q1NGB8_9SPHN Amino acid transporter Alignment 2 E=0 Q1GSF5_SPHAL Amino acid permease-associated region Alignment 3 E=1e-178 Q3BM16_XANC5 Amino acid-polyamine-organocation superfamily protein Alignment 4 E=1e-177 Q8PEJ5_XANAC Amino acid transporter Alignment 5 E=1e-173 Q5GTZ7_XANOR Amino acid transporter Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR002293 Amino acid/polyamine transporter I (Family) PTHR11785   AMINO ACID TRANSPORTER PIRSF006060   High-affinity amino acid transporter IPR004841 Amino acid permease-associated region (Domain) PF00324   AA_permease IPR015606 Cationic amino acid transporter (Family) PTHR11785:SF53   CATIONIC AMINO ACID TRANSPORTER
SignalP	No significant hit
TMHMM	Transmembrane 12
SOSUI	Transmembrane 11

size of protein	466 amino acids
molecular mass	48,629.83 Da
pI	8.83
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 17.4 (81aa) 7.3 (34aa) 13.7 (64aa) 7.9 (37aa) 4.7 (22aa) 1.5 (7aa) 5.4 (25aa) 3 (14aa) 9.7 (45aa) 5.4 (25aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.7 (22aa) 1.5 (7aa) 1.3 (6aa) 1.3 (6aa) 2.4 (11aa) 1.3 (6aa) 0.9 (4aa) 5.4 (25aa) 2.1 (10aa) 3.2 (15aa)

>SJA_C1-27490 amino acid transporter
ATGAGCTGGACGCGCCGCAAACCGATGGAGGCGATGATGCCCGCCCATGAAGGGCACAGG
CTGGCGCGCACCCTGTCCTGGCCGCATCTGCTGGCGCTGGGCGTGGGGGCCATCGTCGGC
ACGGGCATATTGACCCTGATCGGCGTCGGCGCGGACCGGGCGGGACCGGCGGTGCTGCTG
TCCTTCGCCATTGCGGGCGCGATCTGCGCCTGCGCCGCGCTGGCCTGTGCGGAACTTTCC
ACCATGATGCCCGCCGCCGGGAGCGCCTACAGCTACAGCTATGCCGTGCTGGGGGAGGGC
ATCGCCTGGATCGTCGGATGGAGCCTGATCCTGGAATATTCGCTGGTGGTGTCGACCGTG
GCGGTCGGCTGGTCGGGCTATGCCGCGCCGCTGCTGACCTCGGCGGGCTTCCCGGACCTG
CTGACCAGAGGGCCGGAACTGGGCGGCCTCGTCAACCTGCCCGCCATCTTCATCATCGCC
GTCGTCGCCGCGCTGCTGATGCTGGGCACGCATGAAAGCGCCCGGCTCAACAGCCTGCTC
GTCCTCATCAAGATCGCGACATTGAGCCTGTTCGTCGCCATCGCTCTCCCCGCCTTCGAC
GCGCAGAATCTCCAGCCTTTCATGCCCTTCGGCTTCGCCAAGTCGATGGGACCGGACGGG
GTGGAGCGGGGCGTCATGGCGGCGGCGGCGATCATCTTCTTCGCCTTTTACGGCTTCGAC
GCCATCTCCACCGCGGCGGAGGAGGCGAAGAATCCGGAACGCGACCTGGCCATCGGCATC
GTCGGTTCGCTGTTTGCCTGCACGCTCATCTATGTACTGGTCGCGGCGGCTGCGGTGGGG
GCGATGCCCTTCACCCGCTTCGCCGACAGTCCGGAGCCGCTGGCGCTGATCCTGCGCGAA
ATGGGCGAGGGGCAGGTGGCGCGCATCGTCGCCATCGCGGCGGTGATCGCCCTGCCGACC
GTGCTGCTGGGCTTCCTCTACGGCCAGAGCCGCATCTTCCTGGTCATGGCCCGCGACGGT
TTCCTGCCGCAAGGGCTGGCGCAAATCTCCAGGCGCGGCACCCCCGCCCGCATCACCGCC
GTCACTGCCCTATTGGTCGCCATCGTCGCAGGCCTGCTGCCCATCGACGAGATCGCGGCG
CTGGCCAATGCGGGCACGCTGATCGCCTTCACCGCCGTGGGCGCCTGCCTGCTGATCCTG
CGGCGGCGCAGCCCGGACATGAAACGCCCCTTCCGCACGCCCGCCGGATGGCTGGTGGGC
CTGGGCGCCATCGGCGGCTGCGCCTATCTGTTCGTCAGCCTGCCGGTGAAGACCATCATC
GCCTGCCTGATCTGGAACGCCATCGGCCTGGCCGTCTATTTCCTCTATGGGCGCAGGCGG
GCATCCCTGAGCACCGCTTAG


>SJA_C1-27490 amino acid transporter
MSWTRRKPMEAMMPAHEGHRLARTLSWPHLLALGVGAIVGTGILTLIGVGADRAGPAVLL
SFAIAGAICACAALACAELSTMMPAAGSAYSYSYAVLGEGIAWIVGWSLILEYSLVVSTV
AVGWSGYAAPLLTSAGFPDLLTRGPELGGLVNLPAIFIIAVVAALLMLGTHESARLNSLL
VLIKIATLSLFVAIALPAFDAQNLQPFMPFGFAKSMGPDGVERGVMAAAAIIFFAFYGFD
AISTAAEEAKNPERDLAIGIVGSLFACTLIYVLVAAAAVGAMPFTRFADSPEPLALILRE
MGEGQVARIVAIAAVIALPTVLLGFLYGQSRIFLVMARDGFLPQGLAQISRRGTPARITA
VTALLVAIVAGLLPIDEIAALANAGTLIAFTAVGACLLILRRRSPDMKRPFRTPAGWLVG
LGAIGGCAYLFVSLPVKTIIACLIWNAIGLAVYFLYGRRRASLSTA

NBRC No.	clone name	start	stop	length(bp)
G18-001-121	SP1FE13L00050C07	2,739,384	2,776,343	36,960

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.