CDS Information : SJA_C1-27580

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	2,761,286 / 2,760,738 / -
Location	complement(2760738..2761286)
Type	CDS
Length	549 bp (182 aa)

Product	DnaJ-like protein
Gene name
Functional category	Information pathways - protein folding
EC number
Note	DnaJ-class molecular chaperone
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=7e-97 Q1NGC9_9SPHN Heat shock protein DnaJ-like Alignment 2 E=4e-70 Q2G9K9_NOVAD Heat shock protein DnaJ-like protein Alignment 3 E=1e-68 Q1GSB1_SPHAL Heat shock protein DnaJ-like protein Alignment 4 E=2e-68 Q2N8K1_9SPHN DnaJ-class molecular chaperone by acc 5 E=6e-54 Q5NNL7_ZYMMO Heat shock protein DnaJ domain protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001623 Heat shock protein DnaJ, N-terminal (Domain) PF00226   DnaJ PS50076   DNAJ_2 SSF46565   Chaperone J-domain G3DSA:1.10.287.110   no description SM00271   no description IPR003095 Heat shock protein DnaJ (Family) PR00625   DNAJPROTEIN IPR006032 Ribosomal protein S12/S23 (Family) PS00055   RIBOSOMAL_S12 IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ (Family) PTHR11821   DNAJ/HSP40 IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ (Region) PTHR11821   DNAJ/HSP40
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	182 amino acids
molecular mass	21,313.17 Da
pI	7.03
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 11.5 (21aa) 2.7 (5aa) 3.8 (7aa) 0.5 (1aa) 2.7 (5aa) 3.8 (7aa) 4.9 (9aa) 1.1 (2aa) 7.1 (13aa) 6 (11aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 2.2 (4aa) 2.2 (4aa) 2.7 (5aa) 5.5 (10aa) 4.4 (8aa) 3.3 (6aa) 2.7 (5aa) 14.3 (26aa) 8.8 (16aa) 9.3 (17aa)

>SJA_C1-27580 DnaJ-like protein
ATGGCAAGAAGCAGCCGATCCAACGACTGGGGCTTTCCCCGCTGGCGCAGCTATGGCGCA
TCGCGTGAGGCGCAGCAGGTGCGCCTGTGCGACCGGCATGGTTGCGACCGGCCCGGCGAC
TGTCCCGCGCCCAAATCGCCCAATAGCCGCGAACGCTGGTATTTCTGCACCGACCATGCG
GCGGAATATAACCGCAACTGGGACTATTTTCAGGGCCTCGACCAGGAGGAACGCGAACAG
CGCGAGCGGACGGAGCGGCGCGACGCGGGCGGCTATCAGAACAGCGCCTATCATGGCTGG
GGCGGACCGGGCGACGGCAGCCGCTCGCGGGACGAGATGCACGCGCTCCAGGCGCTGGAG
CTGGAGGATGACGCCGATTTCGAGGCGGTGAAGAAAAGCTGGCGGCGTCTGGCGAAGGAA
TATCATCCCGACGTGAAGCCCGGCGACGCGCAGGCGGCCGTGCGCTTCCAGACGATCCAG
GCCGCCTATGAAGTGCTGCGCGCCGCGGAGGAGCGGCGGACGTGGAAACCGCGGGAGCGG
GCGGATTGA


>SJA_C1-27580 DnaJ-like protein
MARSSRSNDWGFPRWRSYGASREAQQVRLCDRHGCDRPGDCPAPKSPNSRERWYFCTDHA
AEYNRNWDYFQGLDQEEREQRERTERRDAGGYQNSAYHGWGGPGDGSRSRDEMHALQALE
LEDDADFEAVKKSWRRLAKEYHPDVKPGDAQAAVRFQTIQAAYEVLRAAEERRTWKPRER
AD

NBRC No.	clone name	start	stop	length(bp)
G18-001-121	SP1FE13L00050C07	2,739,384	2,776,343	36,960

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.