CDS Information : SJA_C1-27620

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	2,765,046 / 2,764,759 / -
Location	complement(2764759..2765046)
Type	CDS
Length	288 bp (95 aa)

Product	pterin-4-alpha-carbinolamine dehydratase
Gene name
Functional category	Intermedialy metabolism - metabolism of coenzymes
EC number	4.2.1.96
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=4e-34 Q1NBI9_9SPHN Putative pterin-4-alpha-carbinolamine dehydratase 4-alpha-hydroxy-tetrahydropterin dehydratase Pterin carbinolamine dehydratase Alignment 2 E=4e-28 Q2D871_ACICY (Q2D871) PhhB, RSc3356; putative pterin-4-alpha-carbinolamine dehydratase protein not found in DB 3 E=8e-27 Q1GS35_SPHAL Putative pterin-4-alpha-carbinolamine dehydratase 4-alpha-hydroxy-tetrahydropterin dehydratase Pterin carbinolamine dehydratase Alignment 4 E=1e-26 Q1LHH0_RALME Putative pterin-4-alpha-carbinolamine dehydratase 4-alpha-hydroxy-tetrahydropterin dehydratase Pterin carbinolamine dehydratase Alignment 5 E=2e-26 Q2J3Z9_RHOP2 Putative pterin-4-alpha-carbinolamine dehydratase 4-alpha-hydroxy-tetrahydropterin dehydratase Pterin carbinolamine dehydratase Pterin carbinolamine dehydratase by acc
HAMAP Database:HAMAP:20061004	MF_00434   PHS
InterPro Database:interpro:16.0	IPR001533 Transcriptional coactivator/pterin dehydratase (Family) PD007262   PHS_RHOPA_P61734; PF01329   Pterin_4a PTHR12599   PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE SSF55248   Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) G3DSA:3.30.1360.20   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	95 amino acids
molecular mass	10,745.24 Da
pI	5.1
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.7 (13aa) 5.3 (5aa) 13.7 (13aa) 4.2 (4aa) 5.3 (5aa) 2.1 (2aa) 4.2 (4aa) 2.1 (2aa) 5.3 (5aa) 2.1 (2aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.3 (5aa) 0 (0aa) 2.1 (2aa) 3.2 (3aa) 1.1 (1aa) 2.1 (2aa) 3.2 (3aa) 9.5 (9aa) 9.5 (9aa) 6.3 (6aa)

>SJA_C1-27620 pterin-4-alpha-carbinolamine dehydratase
ATGATCGCGAAACTGGACGGGGAGGAACGCGCGCTGGCGCTGAGGCAACTGCCGGAATGG
ACGCCGGTGCAGGATCCGGACGGCATCCGACGCCTTTTCGCCTTCCGGGATTTCACGGCC
GCCTTCGGCTTCATGACGCAGGTGGCGCTGCTGGCGGAAAAGGCGGACCATCATCCCGAA
TGGTCGAACGTCTACAACCGGGTAGACATCTTGCTCACCACCCATGATGCGGGCGGCCTG
TCGCGCCGGGACGTCGAGCTGGCCGCTCGGATCGACGCCCTTCTATAG


>SJA_C1-27620 pterin-4-alpha-carbinolamine dehydratase
MIAKLDGEERALALRQLPEWTPVQDPDGIRRLFAFRDFTAAFGFMTQVALLAEKADHHPE
WSNVYNRVDILLTTHDAGGLSRRDVELAARIDALL

NBRC No.	clone name	start	stop	length(bp)
G18-001-121	SP1FE13L00050C07	2,739,384	2,776,343	36,960
G18-001-122	SP1FE13L00046F02	2,762,780	2,799,331	36,552

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.