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CDS Information : SJA_C1-32210

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close this sectionGenomic map

Display Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1

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Overview 
Genome
Clone

close this sectionLocation

Organism Sphingobium japonicum UT26S (= NBRC 101211)
Replicon chromosome1
Start / Stop / Direction 3,205,034 / 3,204,390 / -
Location complement(3204390..3205034)
Type CDS
Length 645 bp (214 aa)

close this sectionAnnotation

Product glutathione S-transferase
Gene name gst
Functional category Intermedialy metabolism
- metabolism of coenzymes
EC number 2.5.1.18
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:8.8
1E=4e-57Q1MFM6_RHIL3Putative glutathione S-transferaseAlignment
2E=6e-57Q92NV7_RHIMEPutative glutathione S-transferaseAlignment
3E=5e-56Q356H2_9BRAD(Q356H2) Similar to Glutathione S-transferasenot found in DB
4E=6e-55Q98FH4_RHILOMll3775 proteinAlignment
5E=2e-54Q143F0_BURXLPutative glutathione S-transferaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR004045 Glutathione S-transferase, N-terminal (Domain)
 [1-73]  3.5e-08 PF02798
PF02798   GST_N
IPR004046 Glutathione S-transferase, C-terminal (Domain)
 [129-194]  1.5e-13 PF00043
PF00043   GST_C
IPR010987 Glutathione S-transferase, C-terminal-like (Domain)
 [70-214]  1.5e-25 SSF47616
SSF47616   Glutathione S-transferase (GST), C-terminal domain
 [88-209]  3.9e-15 G3DSA:1.20.1050.10
G3DSA:1.20.1050.10   no description
IPR012335 Thioredoxin fold (Domain)
 [1-88]  1.1e-14 G3DSA:3.40.30.10
G3DSA:3.40.30.10   no description
IPR012336 Thioredoxin-like fold (Domain)
 [1-84]  4e-18 SSF52833
SSF52833   Thioredoxin-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 214 amino acids
molecular mass 24,385.23 Da
pI 5.8
aa composition
AlaValLeuIlePheTrpProMetGlySer
14
(30aa)
4.7
(10aa)
10.3
(22aa)
4.7
(10aa)
4.7
(10aa)
2.8
(6aa)
8.4
(18aa)
4.2
(9aa)
5.6
(12aa)
2.8
(6aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
2.8
(6aa)
0.9
(2aa)
0.5
(1aa)
0.9
(2aa)
3.7
(8aa)
2.8
(6aa)
1.4
(3aa)
10.3
(22aa)
7
(15aa)
7.5
(16aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G18-001-141 SP1FE13L00050H02 3,185,439 3,213,884 28,446
G18-001-142 SP1FE13L00003C07 3,203,699 3,236,866 33,168

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.