CDS Information : SJA_C1-33580

Display	1000bp 10000bp 100000bp Clone

Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	3,342,403 / 3,339,686 / -
Location	complement(3339686..3342403)
Type	CDS
Length	2,718 bp (905 aa)

Product	phosphoenolpyruvate carboxylase
Gene name	ppc
Functional category	Intermedialy metabolism - metabolism of carbohydrates and related molecules - - specific pathways
EC number	4.1.1.31
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=0 Q1NED2_9SPHN Phosphoenolpyruvate carboxylase Alignment 2 E=0 Q1GNI7_SPHAL Phosphoenolpyruvate carboxylase Alignment 3 E=0 Q5NME0_ZYMMO Phosphoenolpyruvate carboxylase Alignment 4 E=0 CAPP_AZOSE Phosphoenolpyruvate carboxylase by acc 5 E=0 Q143B6_BURXL Phosphoenolpyruvate carboxylase by acc
HAMAP Database:HAMAP:20061004	MF_00595   CAPP
InterPro Database:interpro:16.0	IPR001449 Phosphoenolpyruvate carboxylase (Family) PR00150   PEPCARBXLASE PS00781   PEPCASE_1 PF00311   PEPcase PS00393   PEPCASE_2 IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core (Domain) G3DSA:3.20.20.60   no description SSF51621   Phosphoenolpyruvate/pyruvate domain IPR018129 Phosphoenolpyruvate carboxylase, active site (Active_site) PS00393   PEPCASE_2 PS00781   PEPCASE_1 IPR021135 Phosphoenolpyruvate carboxylase, C-terminal region (Region) PF00311   PEPcase
SignalP	Bacteria, Gram-negative
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	905 amino acids
molecular mass	98,312.09 Da
pI	6.33
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.8 (125aa) 5.9 (53aa) 11.7 (106aa) 5.3 (48aa) 3.3 (30aa) 1.1 (10aa) 4.2 (38aa) 2.1 (19aa) 8.5 (77aa) 5.9 (53aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.3 (39aa) 0.2 (2aa) 2.2 (20aa) 3.8 (34aa) 2.5 (23aa) 3 (27aa) 2.3 (21aa) 7.7 (70aa) 6 (54aa) 6.2 (56aa)

>SJA_C1-33580 phosphoenolpyruvate carboxylase
GTGCAGCATCGATCCATCATGGCGACTCTTGCATCCTCCTCCGTGCCGGCGATCACCCAG
AATCCCGACATCCGCTATCTCGGCCGGCTGCTGGGCGACGTCATCCGCGCCTATGGCGGG
GAGAAGATCTACAAGCAGACCGAATATATCCGCTCCGCCTCCGTCGACCGGGCGCGGGGC
CTGCATGGCGCGGACGTGGTCGACACCGGCCTGGATGCGCTGAACCTCGACGACACGCTC
AGCTTCGTGCGCGGCTTCATGCTGTTCTCGATGCTCGCCAACCTGGCCGAGGATCGCCAG
GGCGTCGCCGCCGAGCCGGGCGCGGACGTCGCCTCCGCCGTCGAAAAGCTGCAATCCCAT
GGAATAGGACGCCAGGCCGTGCTCGACCTGCTGTCCCACGCCCTGATCGTCCCGGTGCTG
ACCGCCCACCCGACCGAGGTGCGGCGCAAGAGCATGATCGACCACAAGAACCGCATCGCC
GACCTGATGCTGCTCAAGGATGGCGGCCGGACGGAAACCGATGAGGGGGAGAATCTGGAC
GAGGCGATATTCCGCCAGATCGCGCTGCTGTGGCAGACGCGACCGCTGCGCCGGGAAAAG
CTGTTCGTCGCGGACGAGATCGAAAATGTCCTCGCCTATTTCCGCGACGTCTTCCTGCCC
GTTCTGCCCGCGCTTTATGCCCGCTGGGAACGGGTGCTGGGCGCGCGCCCGCAGAGCTTC
CTGCGCGTAGGCAACTGGATCGGCGGGGACCGCGACGGCAATCCCTTCGTCCAGGCGCCG
CAGCTTCGATTGGCGCTCGCCAAAGGCTGCGAGGCGGCGTTGGGCTTTTATATGGATGCG
CTCCACGCCCTGGGCGCGGAACTGTCGCTCTCGACCGAACTGGCCCATGTGCCGCAGGCG
GTGCTGGACCTGGCCGACGCCAGCGGCGACGTCTCCCCCAGCCGCCAGGACGAACCCTAT
CGCCGGGCGATTTCCGGCATATACGCCCGTCTGGCCGCAACCCACAGGTCGCTGGTGGGC
AAGGCCGCGCCCCGCCCCTCGGCGCTCAAGGGGGAACCCTATGCCAGCCCGGCCGACCTG
CGGCGCGATCTGGTGACGGTGGCGCAGGGTCTGGCGAGCGAGGGCAATGGCGCCCTGGCG
ACGGGCGGCGCGCTTGGCCGTCTGATCCGCGCGGTCGAGACCTTCGGCTTCCATCTCGCC
ACGCTCGACATGCGGCAGAACAGCGACGTCCACCAGGACGTGGTGGCCGAACTGCTGAAA
GTCGCCGGCGTCGAGGCGGACTATGCCGGCCTCGACGAATATGCCCGCATCGCCCTGCTG
CGGCGGGAATTGGCGAACAACCGGCCGCTCGGCACGCCCTTTTTCGAATATTCGGAAAGG
ACCGCCTCCGAACTCGCCATCGTCCATGCCGCGGCGGAGGCGCACCGCATCTACGGCCCG
CAATGCATCACCCATTATATCATCTCCAAGGCGGAAAGCGTTTCCGACCTGCTGGAGGTC
AACATCATCCTCAAGGAAGCGGGCCTGTGGCGCGCGGGCGCGGACGGCGCGCCGCCGCAG
GCCGCGATCATGGCCGTGCCGTTGTTCGAAACCATCGCCGACCTGGAGGCCGCGCCCAAG
ATCATGGCCGCCTATTTCGGCCTGCCGGAGGTAGGGGGCGTGGTGCGGGAACGCGGCCAT
CAGGAAGTGATGATCGGCTATTCCGACAGCAACAAGGACGGCGGCTACATCACCTCCACC
TGGGGGCTGTTCCAGGCGAGCAAGGCGCTGGCCCCGGTCTTTGCCGAAGCGGGCACGGCG
ATGCAGCTTTTCCACGGCCGCGGCGGCGCGGTCGGGCGCGGCGGCGGCTCCTCCTTCGCG
GCGATCCAGGCGCAGCCCAAGGGCACGGTGCAGGGCCGCATCCGCATCACCGAACAGGGC
GAGGTGATCGCGGCCAAATTCGGCACCCGCGACGTCGCCATGACCAATTTGGAGGCGACG
ACCAGCGCGACCCTGCTCGCCAGCCTGGAACCCGAAGTCCTGTCCGACCGCGACGCCGCC
CGCTTCGCCGCCGCCATGGACCAATTGTCGAAGACCGCCTTCGCCGCCTATCGCGACCTG
GTCTACGGCACCGACGGGTTCAAGGAATTCTTCCGGCAATTGACCCCGATCCAGGAAATT
TCCGGCCTCAAGATCGGCTCCCGTCCGGCCAGCCGCACCAAGAGCACCCGGATCGAGGAT
CTGCGCGCCATCCCCTGGGTGTTCAGTTGGGCGCAGGCGCGGGTGATGCTGCCGGGCTGG
TACGGCGTGGGTCACGCGCTTTCCGCCTTCGAGGACAAGGCATTGTTGGCGGACATGGCG
CAGCACTGGTCCTTCCTGCAATCCGCGCTCGCCAATCTGGAGATGGTGCTGGCCAAGTCG
GACCTCGGCATCGCCGCCCATTATCTGCCGCTGGTGGAGGATCAGGCGAGGGGCGCGGAG
ATTTTCGACCGCATAAGAGGCGGCTGGGACATGACCCATGACGGCCTGCTCGCCGCCACC
GGCCAATCGCGCCTGCTGGAGAGGAATCCGAAGCTCGACACGTCGATCCGCCTGCGCCTG
CCCTATATCGAGCCGCTGAACCTGCTCCAGGTCGAACTGATGAAGCGCCACCGCAGCGGC
GAGGACGACCCGCGCATCAAGGAAGGCATAGAATTGTCGATCAACGCGATCGCGACGGCG
CTGAGGAATAGCGGATAG


>SJA_C1-33580 phosphoenolpyruvate carboxylase
MQHRSIMATLASSSVPAITQNPDIRYLGRLLGDVIRAYGGEKIYKQTEYIRSASVDRARG
LHGADVVDTGLDALNLDDTLSFVRGFMLFSMLANLAEDRQGVAAEPGADVASAVEKLQSH
GIGRQAVLDLLSHALIVPVLTAHPTEVRRKSMIDHKNRIADLMLLKDGGRTETDEGENLD
EAIFRQIALLWQTRPLRREKLFVADEIENVLAYFRDVFLPVLPALYARWERVLGARPQSF
LRVGNWIGGDRDGNPFVQAPQLRLALAKGCEAALGFYMDALHALGAELSLSTELAHVPQA
VLDLADASGDVSPSRQDEPYRRAISGIYARLAATHRSLVGKAAPRPSALKGEPYASPADL
RRDLVTVAQGLASEGNGALATGGALGRLIRAVETFGFHLATLDMRQNSDVHQDVVAELLK
VAGVEADYAGLDEYARIALLRRELANNRPLGTPFFEYSERTASELAIVHAAAEAHRIYGP
QCITHYIISKAESVSDLLEVNIILKEAGLWRAGADGAPPQAAIMAVPLFETIADLEAAPK
IMAAYFGLPEVGGVVRERGHQEVMIGYSDSNKDGGYITSTWGLFQASKALAPVFAEAGTA
MQLFHGRGGAVGRGGGSSFAAIQAQPKGTVQGRIRITEQGEVIAAKFGTRDVAMTNLEAT
TSATLLASLEPEVLSDRDAARFAAAMDQLSKTAFAAYRDLVYGTDGFKEFFRQLTPIQEI
SGLKIGSRPASRTKSTRIEDLRAIPWVFSWAQARVMLPGWYGVGHALSAFEDKALLADMA
QHWSFLQSALANLEMVLAKSDLGIAAHYLPLVEDQARGAEIFDRIRGGWDMTHDGLLAAT
GQSRLLERNPKLDTSIRLRLPYIEPLNLLQVELMKRHRSGEDDPRIKEGIELSINAIATA
LRNSG

NBRC No.	clone name	start	stop	length(bp)
G18-001-147	SP1FE13L00038D10	3,319,063	3,358,069	39,007

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.