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CDS Information : SJA_C1-33580

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1

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Overview 
Genome

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Organism Sphingobium japonicum UT26S (= NBRC 101211)
Replicon chromosome1
Start / Stop / Direction 3,342,403 / 3,339,686 / -
Location complement(3339686..3342403)
Type CDS
Length 2,718 bp (905 aa)

close this sectionAnnotation

Product phosphoenolpyruvate carboxylase
Gene name ppc
Functional category Intermedialy metabolism
- metabolism of carbohydrates and related molecules
- - specific pathways
EC number 4.1.1.31
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:8.8
1E=0Q1NED2_9SPHNPhosphoenolpyruvate carboxylaseAlignment
2E=0Q1GNI7_SPHALPhosphoenolpyruvate carboxylaseAlignment
3E=0Q5NME0_ZYMMOPhosphoenolpyruvate carboxylaseAlignment
4E=0CAPP_AZOSEPhosphoenolpyruvate carboxylaseby acc
5E=0Q143B6_BURXLPhosphoenolpyruvate carboxylaseby acc
HAMAP
Database:HAMAP:20061004
 [16-905]  17.446 MF_00595
MF_00595   CAPP
InterPro
Database:interpro:16.0
IPR001449 Phosphoenolpyruvate carboxylase (Family)
 [138-151]  8.8e-54 PR00150 [243-258]  8.8e-54 PR00150 [395-415]  8.8e-54 PR00150 [561-581]  8.8e-54 PR00150 [603-632]  8.8e-54 PR00150 [738-764]  8.8e-54 PR00150
PR00150   PEPCARBXLASE
 [139-150]  PS00781
PS00781   PEPCASE_1
 [5-905]  8.1e-65 PF00311
PF00311   PEPcase
 [563-575]  PS00393
PS00393   PEPCASE_2
IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core (Domain)
 [160-671]  1.5e-114 G3DSA:3.20.20.60
G3DSA:3.20.20.60   no description
 [21-905]  2.2e-267 SSF51621
SSF51621   Phosphoenolpyruvate/pyruvate domain
IPR018129 Phosphoenolpyruvate carboxylase, active site (Active_site)
 [563-575]  PS00393
PS00393   PEPCASE_2
 [139-150]  PS00781
PS00781   PEPCASE_1
IPR021135 Phosphoenolpyruvate carboxylase, C-terminal region (Region)
 [5-905]  8.1e-65 PF00311
PF00311   PEPcase
SignalP
 [1-19]  0.99 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 905 amino acids
molecular mass 98,312.09 Da
pI 6.33
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.8
(125aa)
5.9
(53aa)
11.7
(106aa)
5.3
(48aa)
3.3
(30aa)
1.1
(10aa)
4.2
(38aa)
2.1
(19aa)
8.5
(77aa)
5.9
(53aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.3
(39aa)
0.2
(2aa)
2.2
(20aa)
3.8
(34aa)
2.5
(23aa)
3
(27aa)
2.3
(21aa)
7.7
(70aa)
6
(54aa)
6.2
(56aa)

open this sectionSequence