DOGAN: CDS Information : SLG

Display

Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

Overview
Genome

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
chromosome

Organism	Sphingobium sp. SYK-6 (= NBRC 103272)
Replicon	chromosome
Start / Stop / Direction	1,598 / 2,422 / +
Location	1598..2422
Type	CDS
Length	825 bp (274 aa)

Product	shikimate 5-dehydrogenase
Gene name	aroE
Functional category	Metabolism - [E] Amino acid transport and metabolism
EC number	1.1.1.25
Note
KEGG pathway
Sequence feature
References

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=1e-113	Q1ND98_9SPHN	Shikimate 5-dehydrogenase	Alignment
2	E=8e-80	AROE_SPHAL	Shikimate dehydrogenase	Alignment
3	E=3e-64	A5VA67_SPHWW	Shikimate dehydrogenase	Alignment
4	E=7e-60	Q2N6K1_ERYLH	Shikimate 5-dehydrogenase	Alignment
5	E=5e-58	Q2GC59_NOVAD	Shikimate dehydrogenase	Alignment

HAMAP
Database:HAMAP:20080521

MF_00222 AROE

InterPro
Database:interpro:26.0

IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (Domain)
	PF01488 Shikimate_DH
IPR011342 Quinate/shikimate 5-dehydrogenase (Domain)
	TIGR00507 aroE: shikimate 5-dehydrogenase
IPR011342 Shikimate dehydrogenase (Family)
	TIGR00507 aroE: shikimate 5-dehydrogenase
IPR013708 Shikimate dehydrogenase substrate binding, N-terminal (Domain)
	PF08501 Shikimate_dh_N
IPR016040 NAD(P)-binding domain (Domain)
	G3DSA:3.40.50.720 no description
	SSF51735 NAD(P)-binding Rossmann-fold domains
IPR022893 Shikimate, quinate/shikimate dehydrogenase (Family)
	MF_00222 AROE_MF_00222

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

274 amino acids

molecular mass

29,124.28 Da

pI

4.86

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
16.1 (44aa)	6.2 (17aa)	11.7 (32aa)	5.5 (15aa)	3.3 (9aa)	1.1 (3aa)	6.9 (19aa)	1.5 (4aa)	9.1 (25aa)	3.6 (10aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
4 (11aa)	0.7 (2aa)	1.8 (5aa)	2.9 (8aa)	2.2 (6aa)	2.2 (6aa)	1.8 (5aa)	6.9 (19aa)	7.3 (20aa)	5.1 (14aa)

>SLG_00030 shikimate 5-dehydrogenase
ATGAGCCAGCAACGCCCTTATGCCGAAGTGATCGGCGATCCCATCGCGCACAGCAAGTCG
CCGACCATCCATAATTTCTGGCTGGAGGCGCTCGGCATCGATGCCGAATATCGCAAGACG
CATGTGCGGCCGGACGAGCTTGCTGCCTATTTCCTGCGCCGGCGCGCCGATCCGGACTGG
CTGGGCTGCAACATCACCATACCGCACAAGGTCGCGGCGCTGGAGTTCGTGGACGATCCG
GGCGGCGTGCGCGAGCGGATCGGCGCGATCAACACCGTCGCCTGCGAGACGGGCGGGCCG
CTGATCGGGACCAACACCGATGCCGGCGGCTTCCTCCAGCCGCTGCTGGCGCGCAAATGG
CAGGGCAGCAGCGCTGTTCTCGCCGGCACGGGCGGCGCGGCGCGCGCCATCGGCTTCGCG
CTGCGTTCGGTGGGCGTGAGCGCGATCACCATCGTCGCGCGCGATGCCGCAAAGGGCCAT
GCGCTGCTGGAAAAGCTCGGCATGGAAGGCGATGTGCAGGATTTCGCGGCGCCGTTGCCC
GCTGCGGATCTGCTGGTCAATTCCTCCTCGCTTGGCATGGTCGGCCAGCCGCCTTATCAG
CCCGATCTGCGCGCCTTGCCGGACCGGGCGGTCGTCTATGACATCGTATATGCGCCGCTC
GAGACGCCCCTTCTCGCCGCTGCGCGCGCGCGCGGGCTCGAGACGGTGGACGGGCTGGAA
ATGCTCATCGGCCAGGCGGCGCTTGCCTTCGACATCTTCTTCGATGCCGATGCCCCGCGC
GCGCTGGATGCGGAGCTGCGCGAACGCCTGCTCGCGCCCGCCTGA


>SLG_00030 shikimate 5-dehydrogenase
MSQQRPYAEVIGDPIAHSKSPTIHNFWLEALGIDAEYRKTHVRPDELAAYFLRRRADPDW
LGCNITIPHKVAALEFVDDPGGVRERIGAINTVACETGGPLIGTNTDAGGFLQPLLARKW
QGSSAVLAGTGGAARAIGFALRSVGVSAITIVARDAAKGHALLEKLGMEGDVQDFAAPLP
AADLLVNSSSLGMVGQPPYQPDLRALPDRAVVYDIVYAPLETPLLAAARARGLETVDGLE
MLIGQAALAFDIFFDADAPRALDAELRERLLAPA

CDS Information : SLG_00030

Genomic map

Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence