CDS Information : SLG_00140
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
11,136 / 11,807 / + |
| Location |
11136..11807 |
| Type |
CDS |
| Length |
672 bp (223 aa) |
Annotation
| Product |
peptidyl-prolyl cis-trans isomerase |
| Gene name |
|
| Functional category |
Cellular processes and signaling
- [O] Posttranslational modification, protein turnover, chaperones |
| EC number |
5.2.1.8 |
| Note |
|
| KEGG pathway |
|
| Sequence feature |
|
| References |
Family/Domain:IPR002130
Uniprot:P0AFL3 Pubmed:2190212,1606970,2001362,8130188,8180197 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
|
| TMHMM |
No significant hit |
| SOSUI |
|
Calculated information (Amino acid sequence)
| size of protein |
223 amino acids |
| molecular mass |
24,377.44 Da |
| pI |
10.86 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
8.5
(19aa) | 8.1
(18aa) | 9.9
(22aa) | 4.5
(10aa) | 4.5
(10aa) | 0.4
(1aa) | 7.6
(17aa) | 3.1
(7aa) | 9.9
(22aa) | 3.6
(8aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
7.6
(17aa) | 0.9
(2aa) | 2.7
(6aa) | 2.2
(5aa) | 2.7
(6aa) | 5.4
(12aa) | 1.8
(4aa) | 9
(20aa) | 6.7
(15aa) | 0.9
(2aa) |
|
Sequence
>SLG_00140 peptidyl-prolyl cis-trans isomerase
TTGCTGTTTTTGTCCCGCTTTCTCCTCGCCCTGGCGGCCTTTCTCATCCTGCCTCTCTCC
GGTCTCCAGGCCCAGCCGCCTTCCGCCAGCCGGCCGACGCCGGGTTATGTGCGGGTCCGG
CTCGAGACGAGCATGGGCAATATCGTGCTGGCGCTGGATGCGAAGCGGGCGCCGCTCACC
ACGAAGAACTTCCTCGTCTATGTGGATGACGGGCGGCTGGACGACACGACCTTCTATCGC
GCCACGCGCCACAAGGGCAATCCGAAGACCGGCTTCGTCCAGGGCGGCATCGATACGGAT
GCGCGGCGCATCTATTTCCCGACCGTGAAGCTGGAGCCCACGGACAAGACGGGCATTCGC
CATCTCGACGGCGTCATTTCCATGGCGCGGCACAAGGACCCGGATTCGGGCACCGGCAAT
TTCTCGATCCAGGTCGGCCCCAATCCCACGCTGGACGCCCGGCCCGGCTATCCCGGTTAT
GCCGCGTTCGGCCATGTTGTGGCGGGCATGGACGTGGTGAAGCGCATTCTCGCGCTGGAC
ACATGCTGCGGGCGCGGCGTCATGTTCGGACAGATGATCAAGAACCGGGTGACGATCGTC
CGCGCGGTCCGGCTGGACGGCAAGCCCGCGCCGACCGGCGCGGTGAAGCCCTGGCTGATG
CGCCGGAAATAG
>SLG_00140 peptidyl-prolyl cis-trans isomerase
MLFLSRFLLALAAFLILPLSGLQAQPPSASRPTPGYVRVRLETSMGNIVLALDAKRAPLT
TKNFLVYVDDGRLDDTTFYRATRHKGNPKTGFVQGGIDTDARRIYFPTVKLEPTDKTGIR
HLDGVISMARHKDPDSGTGNFSIQVGPNPTLDARPGYPGYAAFGHVVAGMDVVKRILALD
TCCGRGVMFGQMIKNRVTIVRAVRLDGKPAPTGAVKPWLMRRK
![[39-200] 9.8e-26 PF00160](/dogan/img/H.gif "[39-200] 9.8e-26 PF00160"){kind=small}
![[42-204] 13.635 PS50072](/dogan/img/M.gif "[42-204] 13.635 PS50072"){kind=small}
![[33-206] 1.1e-27 G3DSA:2.40.100.10](/dogan/img/X2.gif "[33-206] 1.1e-27 G3DSA:2.40.100.10"){kind=small}
![[33-206] 2.7e-31 SSF50891](/dogan/img/B.gif "[33-206] 2.7e-31 SSF50891"){kind=small}
![[1-24] 1 Signal](/dogan/img/R.gif "[1-24] 1 Signal"){kind=small}
![[2-23] Transmembrane](/dogan/img/FU.gif "[2-23] Transmembrane"){kind=small}