CDS Information : SLG_00160
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
17,996 / 16,659 / - |
| Location |
complement(16659..17996) |
| Type |
CDS |
| Length |
1,338 bp (445 aa) |
Annotation
| Product |
hypothetical protein |
| Gene name |
|
| Functional category |
Unannotated |
| EC number |
|
| Note |
|
| KEGG pathway |
|
| Sequence feature |
|
| References |
|
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
| InterPro |
No significant hit |
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
445 amino acids |
| molecular mass |
47,419.13 Da |
| pI |
4.33 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
16.9
(75aa) | 5.2
(23aa) | 9.7
(43aa) | 5.4
(24aa) | 3.1
(14aa) | 0.9
(4aa) | 5.6
(25aa) | 2.2
(10aa) | 7.4
(33aa) | 5.6
(25aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
5.4
(24aa) | 0.4
(2aa) | 1.8
(8aa) | 2.2
(10aa) | 2.2
(10aa) | 1.3
(6aa) | 2.2
(10aa) | 7
(31aa) | 9.9
(44aa) | 5.4
(24aa) |
|
Sequence
>SLG_00160 hypothetical protein
ATGGATGCACAGGGGCACAGCGCGGCCGAGGAGGCCATAATGCTGGACGACGCAATGGAC
GCGCCGCCTATCGTCCGCTTCGACGAGCGCCGGATGCACATCCGCGCCTATAATTACTGG
GCATCGCTGCTGGGCGACCGCTCGCTGCCCAATATCGAGGATCTCAATCCCGCCGAGATC
CACGATTTCGGCTCGCATAGCGTGCTGCTGGACTTCACCAGCGGCATCGACGACCCGACG
ATCGCTTTCCTCGGCAGCGCGCTGGCCGCGCAGTGCGACCTGACGAGCCCGGTCAGCCGT
GTCAGCCAGATCCCGGCGCGCACGCTGCTCTCGCGCATCACCGACCATTATCTCCAGATC
ATCGCCAATGCCGCGCCGATCGGCTTCGAGGCGGAATTCACCAACCAGCGCGGTGCCGAG
ATTCTCTATCGCGGCATCATGATGCCCTTCTCGACCGACGACGACACCATCGACTTCGTC
TATGGCGTCATCAACTGGAAGGAAGTGGTCACCGAGGACCTGGCCGACAGCATCGCCGCG
GAAGTCGCCGCGGCCGGGCCGGGTGCGCTGGCCATGCCGACCGGCGTGCCGGTCTGGTCC
GACGGCCCCACCAGCTTCGACCTCGGTCCCGACGATGGCTTCGACGACCTCGATGAGACG
CCGACGGCCGAGGACGGGATGTGGGACAATGCCGCGCTCGACCTCACGCCCGACCTCATA
GACCATTCCGACAGCGAGACGGCGCTGGGCGATTCGCTGGCGCAGGCACGCGAGGCCGCG
GCAGCCGCCAACGCCAGCGAGGGCCGCACGCGCCATGCCCTCTATCGCGCCATCGGCCTC
GCCCACGCCTTCGCGGCCGTGGCAGCCGCACGGCCGGACGACTATGCCGAGCTGCTGGCC
GATTCCGGCATCGAGGTGCAGCCGCGCAGCCCGCTGACCGCGCTCGCCAAGCTCGTCTTC
GGCGCGGACTATGACAAGACCCGCCTCGCCGAGTTCGTCTGCGCGATCGACCATGCGCTG
GCCGAGGGCATGGAGCCCGGCGCGCTGACCCAGTATCTCCACAGCATCCCCGGGGGGCTC
AAGGGGCTGGTCGCCAGCGTGCGCGCGCGTCGTCGCGGCGCCAGCGTGCCGACGCGCCCG
GCAGCCGGCAGCCGCGCCCGGCGCAAGCTGCGCGGAGCCGGCACGATCACCCCCGAAGCA
CTGCCCTTCGACGAGACGGGCCTCGCAGTCGTCATCCTGCGGCGGGACGCGGACGGGCAG
CTCGCCATGGTGGCCGCGCTCGACCAGGAAGACCGGCTGACCGGCCGCGTCTATGCCGCC
GCCGCTCGAAAGGTCTGA
>SLG_00160 hypothetical protein
MDAQGHSAAEEAIMLDDAMDAPPIVRFDERRMHIRAYNYWASLLGDRSLPNIEDLNPAEI
HDFGSHSVLLDFTSGIDDPTIAFLGSALAAQCDLTSPVSRVSQIPARTLLSRITDHYLQI
IANAAPIGFEAEFTNQRGAEILYRGIMMPFSTDDDTIDFVYGVINWKEVVTEDLADSIAA
EVAAAGPGALAMPTGVPVWSDGPTSFDLGPDDGFDDLDETPTAEDGMWDNAALDLTPDLI
DHSDSETALGDSLAQAREAAAAANASEGRTRHALYRAIGLAHAFAAVAAARPDDYAELLA
DSGIEVQPRSPLTALAKLVFGADYDKTRLAEFVCAIDHALAEGMEPGALTQYLHSIPGGL
KGLVASVRARRRGASVPTRPAAGSRARRKLRGAGTITPEALPFDETGLAVVILRRDADGQ
LAMVAALDQEDRLTGRVYAAAARKV
