CDS Information : SLG_00210
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
20,870 / 20,514 / - |
| Location |
complement(20514..20870) |
| Type |
CDS |
| Length |
357 bp (118 aa) |
Annotation
| Product |
putative response regulator receiver protein |
| Gene name |
|
| Functional category |
Cellular processes and signaling
- [T] Signal transduction mechanisms |
| EC number |
|
| Note |
|
| KEGG pathway |
|
| Sequence feature |
|
| References |
Family/Domain:IPR001789 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
118 amino acids |
| molecular mass |
12,775.69 Da |
| pI |
4.44 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
18.6
(22aa) | 4.2
(5aa) | 9.3
(11aa) | 8.5
(10aa) | 2.5
(3aa) | 0
(0aa) | 5.9
(7aa) | 5.1
(6aa) | 5.1
(6aa) | 3.4
(4aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
4.2
(5aa) | 0
(0aa) | 0.8
(1aa) | 3.4
(4aa) | 2.5
(3aa) | 2.5
(3aa) | 2.5
(3aa) | 5.9
(7aa) | 6.8
(8aa) | 8.5
(10aa) |
|
Sequence
>SLG_00210 putative response regulator receiver protein
ATGACGATGCGCGGCCTCGCCATCCTCATCATCGAGGACGAGCCCATCCTCGCCCTTGCC
CTGGAGGACATGCTGGAAAAAGCGGGCGCCAGCCCGATCCTCGCCGACACGCTCGCGGAA
GCGACGGAGATGATCGCGCGCCAGCCTCCCGATGCGGCGATCCTGGACGTGAATGTGCAC
GGCGAGCAGAGCTATTCGGTTGCAGCGGCGCTGGCCGAGCGGCGCATCCCCTTCATCTTC
GCGACCGGCTATGGCGACGCCATGCACGAGGATGCCCATGCGCAAGTGCCCACCGTCGCG
AAACCCTACAGCTTCCGCGACATCGAACGCGCCCTGAAACGCGCGCAGGGGATGTAA
>SLG_00210 putative response regulator receiver protein
MTMRGLAILIIEDEPILALALEDMLEKAGASPILADTLAEATEMIARQPPDAAILDVNVH
GEQSYSVAAALAERRIPFIFATGYGDAMHEDAHAQVPTVAKPYSFRDIERALKRAQGM
![[7-86] 14.699 PS50110](/dogan/img/M.gif "[7-86] 14.699 PS50110"){kind=small}
![[6-112] 1.3e-07 SM00448](/dogan/img/R.gif "[6-112] 1.3e-07 SM00448"){kind=small}
![[8-88] 1.3e-08 PF00072](/dogan/img/H.gif "[8-88] 1.3e-08 PF00072"){kind=small}
![[3-117] 3.7e-21 SSF52172](/dogan/img/B.gif "[3-117] 3.7e-21 SSF52172"){kind=small}