CDS Information : SLG_00280
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
28,427 / 27,879 / - |
| Location |
complement(27879..28427) |
| Type |
CDS |
| Length |
549 bp (182 aa) |
Annotation
| Product |
conserved hypothetical protein |
| Gene name |
|
| Functional category |
Unannotated |
| EC number |
|
| Note |
|
| KEGG pathway |
|
| Sequence feature |
|
| References |
|
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
|
| TMHMM |
|
| SOSUI |
|
Calculated information (Amino acid sequence)
| size of protein |
182 amino acids |
| molecular mass |
18,729.61 Da |
| pI |
6.96 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
19.8
(36aa) | 9.9
(18aa) | 9.3
(17aa) | 4.4
(8aa) | 3.8
(7aa) | 0.5
(1aa) | 7.7
(14aa) | 2.2
(4aa) | 8.2
(15aa) | 4.9
(9aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
1.6
(3aa) | 0.5
(1aa) | 2.7
(5aa) | 4.4
(8aa) | 1.6
(3aa) | 3.8
(7aa) | 2.2
(4aa) | 3.8
(7aa) | 6.6
(12aa) | 1.6
(3aa) |
|
Sequence
>SLG_00280 conserved hypothetical protein
ATGCGGTTACCGGTTCTTCTGTTCGCCGGCGTGGCGCTGCTGCCCGCCGCTATGCCTGCC
GCCGCCCAGGGACCAGCCTTCCGCCCCGGCCCGGTCTTCACCGACTTCGGCCAGACCGCG
CCGGTGGACAGCGACCTCGTGATCCCGCCGGATGCGCAACTCAGGATCGCCTTCGACGCG
AAGGACGCCGCGCCGGCGGGAGAGGTGAACAAGACAATCAACAGCGCCGCGCGCTTCATC
AACATGCATGTCGCGGCCGGCGTGGCGCCTGACCGCATCAAGGTCGCCGTGGTCGTCCAC
GGACCGGCGAGCTGGGACGTGGTGCGGGACGCGGCCTATCGCGCGCACAAGGAGGGGGGC
GCCAATGGATCGGCAAGCGCTGTGGCGCAGCTTCTGGAGAAGGGCGTGGACATCTATCTC
TGCGGCCAGAGCGCCGCGAGCCTCGGCATCGCCAAGGACGACCTGCTGCCGGGTGTGAAG
CTCGCGCTTTCCGCCATGTCGGCGCATGTCCTGCTCCAGCAGCAGGGCTATGCGATCAAC
CCGTTCTGA
>SLG_00280 conserved hypothetical protein
MRLPVLLFAGVALLPAAMPAAAQGPAFRPGPVFTDFGQTAPVDSDLVIPPDAQLRIAFDA
KDAAPAGEVNKTINSAARFINMHVAAGVAPDRIKVAVVVHGPASWDVVRDAAYRAHKEGG
ANGSASAVAQLLEKGVDIYLCGQSAASLGIAKDDLLPGVKLALSAMSAHVLLQQQGYAIN
PF
![[64-179] 5.7e-17 PF02635](/dogan/img/H.gif "[64-179] 5.7e-17 PF02635"){kind=small}
![[1-22] 1 Signal](/dogan/img/R.gif "[1-22] 1 Signal"){kind=small}
![[5-27] Transmembrane (i-o)](/dogan/img/C.gif "[5-27] Transmembrane (i-o)"){kind=small}
![[1-23] Transmembrane](/dogan/img/FU.gif "[1-23] Transmembrane"){kind=small}