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CDS Information : SLG_00710

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close this sectionGenomic map

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Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

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Overview 
Genome

close this sectionLocation

Organism Sphingobium sp. SYK-6 (= NBRC 103272)
Replicon chromosome
Start / Stop / Direction 66,527 / 67,489 / +
Location 66527..67489
Type CDS
Length 963 bp (320 aa)

close this sectionAnnotation

Product malate dehydrogenase
Gene name mdh
Functional category Metabolism
- [C] Energy production and conversion
EC number 1.1.1.37
Note
KEGG pathway map:00020 KO:K00026
map:00620 KO:K00026
map:00630 KO:K00026
map:00710 KO:K00026
map:00720 KO:K00026
Sequence feature
References HAMAP:MF_00487

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-157MDH_NOVADMalate dehydrogenaseAlignment
2E=1e-153A5P706_9SPHNMalate dehydrogenase, NAD-dependentAlignment
3E=1e-153MDH_SPHWWMalate dehydrogenaseAlignment
4E=1e-151A3WB75_9SPHNMalate dehydrogenaseAlignment
5E=1e-151Q2N9F3_ERYLHMalate dehydrogenase, NAD-dependentAlignment
HAMAP
Database:HAMAP:20080521
 [4-313]  40.79 MF_00487
MF_00487   MDH
InterPro
Database:interpro:26.0
IPR001236 Lactate/malate dehydrogenase, N-terminal (Domain)
 [5-143]  1.2e-32 PF00056
PF00056   Ldh_1_N
IPR001236 Lactate/malate dehydrogenase (Family)
 [147-307]  9e-34 PF02866
PF02866   Ldh_1_C
 [5-143]  1.2e-32 PF00056
PF00056   Ldh_1_N
 [144-319]  1.5e-55 G3DSA:3.90.110.10
G3DSA:3.90.110.10   no description
IPR001557 L-lactate/malate dehydrogenase (Family)
 [5-29]  3.4e-27 PR00086 [29-53]  3.4e-27 PR00086 [117-137]  3.4e-27 PR00086 [141-159]  3.4e-27 PR00086 [171-184]  3.4e-27 PR00086
PR00086   LLDHDRGNASE
 [3-318]  5.8e-127 PIRSF000102
PIRSF000102   L-lactate/malate dehydrogenase
IPR011275 Malate dehydrogenase, NAD-dependent (Family)
 [4-313]  40.79 MF_00487
MF_00487   MDH_MF_00487
 [3-312]  1.9e-160 TIGR01763
TIGR01763   MalateDH_bact: malate dehydrogenase, NA
IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (Domain)
 [145-312]  5.1e-55 SSF56327
SSF56327   LDH C-terminal domain-like
 [144-319]  1.5e-55 G3DSA:3.90.110.10
G3DSA:3.90.110.10   no description
IPR016040 NAD(P)-binding domain (Domain)
 [3-143]  2.7e-46 G3DSA:3.40.50.720
G3DSA:3.40.50.720   no description
 [2-144]  9.3e-54 SSF51735
SSF51735   NAD(P)-binding Rossmann-fold domains
IPR022383 Lactate/malate dehydrogenase, C-terminal (Domain)
 [147-307]  9e-34 PF02866
PF02866   Ldh_1_C
SignalP
 [1-21]  0.753 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 320 amino acids
molecular mass 33,038.22 Da
pI 4.89
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.1
(42aa)
11.3
(36aa)
8.8
(28aa)
6.9
(22aa)
2.8
(9aa)
0.6
(2aa)
3.8
(12aa)
2.8
(9aa)
12.5
(40aa)
4.7
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.8
(12aa)
0.9
(3aa)
2.5
(8aa)
1.6
(5aa)
2.2
(7aa)
6.3
(20aa)
1.3
(4aa)
2.8
(9aa)
7.5
(24aa)
4.1
(13aa)

open this sectionSequence