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CDS Information : SLG_06270

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Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

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Overview 
Genome

close this sectionLocation

Organism Sphingobium sp. SYK-6 (= NBRC 103272)
Replicon chromosome
Start / Stop / Direction 649,551 / 652,253 / +
Location 649551..652253
Type CDS
Length 2,703 bp (900 aa)

close this sectionAnnotation

Product phosphoenolpyruvate carboxylase
Gene name ppc
Functional category Metabolism
- [C] Energy production and conversion
EC number 4.1.1.31
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q1NED2_9SPHNPhosphoenolpyruvate carboxylaseAlignment
2E=0A5VB17_SPHWWPhosphoenolpyruvate carboxylaseAlignment
3E=0Q1GNI7_SPHALPhosphoenolpyruvate carboxylaseAlignment
4E=0C5TFD9_ZYMMOPhosphoenolpyruvate carboxylaseAlignment
5E=0C8WEV3_ZYMMNPhosphoenolpyruvate carboxylaseAlignment
HAMAP
Database:HAMAP:20080521
 [11-900]  17.696 MF_00595
MF_00595   CAPP
InterPro
Database:interpro:26.0
IPR001449 Phosphoenolpyruvate carboxylase (Family)
 [515-870]  2.2e-49 PF00311
PF00311   PEPcase
 [134-145]  PS00781
PS00781   PEPCASE_1
 [558-570]  PS00393
PS00393   PEPCASE_2
 [133-146]  1.6e-52 PR00150 [238-253]  1.6e-52 PR00150 [390-410]  1.6e-52 PR00150 [556-576]  1.6e-52 PR00150 [598-627]  1.6e-52 PR00150 [733-759]  1.6e-52 PR00150
PR00150   PEPCARBXLASE
IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core (Domain)
 [155-666]  2.7e-116 G3DSA:3.20.20.60
G3DSA:3.20.20.60   no description
 [16-900]  1.7e-266 SSF51621
SSF51621   Phosphoenolpyruvate/pyruvate domain
IPR018129 Phosphoenolpyruvate carboxylase, active site (Active_site)
 [558-570]  PS00393
PS00393   PEPCASE_2
 [134-145]  PS00781
PS00781   PEPCASE_1
IPR021135 Phosphoenolpyruvate carboxylase, C-terminal region (Region)
 [515-870]  2.2e-49 PF00311
PF00311   PEPcase
IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type (Family)
 [2-900]  17.728 MF_00595
MF_00595   CAPP_MF_00595
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 900 amino acids
molecular mass 98,060.89 Da
pI 5.82
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.2
(128aa)
5.4
(49aa)
11.3
(102aa)
5.6
(50aa)
3.1
(28aa)
1.1
(10aa)
5.6
(50aa)
2.4
(22aa)
8.2
(74aa)
5.6
(50aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.1
(37aa)
0.1
(1aa)
1.9
(17aa)
3.2
(29aa)
2.7
(24aa)
1.9
(17aa)
1.8
(16aa)
9.1
(82aa)
5.8
(52aa)
6.9
(62aa)

open this sectionSequence