small fontnormal fontlarge fontmail to

CDS Information : SLG_10370

close allopen/close all

close this sectionGenomic map

Display

Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

Legend Jump
Overview 
Genome

close this sectionLocation

Organism Sphingobium sp. SYK-6 (= NBRC 103272)
Replicon chromosome
Start / Stop / Direction 1,098,772 / 1,097,735 / -
Location complement(1097735..1098772)
Type CDS
Length 1,038 bp (345 aa)

close this sectionAnnotation

Product putative DNA ligase
Gene name
Functional category Information storage and processing
- [L] Replication, recombination and repair
EC number 6.5.1.1
Note This ORF product lacks the DNA ligase, N-terminal domain (IPR012308) in the N-terminal region.
KEGG pathway
Sequence feature
References Uniprot:Q9HH07 Pubmed:15251207

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=3e-99Q11EU8_MESSBATP dependent DNA ligaseAlignment
2E=5e-97B4RHS7_PHEZHATP-dependent DNA ligaseAlignment
3E=7e-95A4YJI1_BRASOPutative ATP-dependent DNA ligaseAlignment
4E=4e-94B2A077_OPITPATP dependent DNA ligaseAlignment
5E=4e-94B4D2T7_9BACTATP dependent DNA ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR000977 ATP-dependent DNA ligase (Family)
 [32-40]  PS00697
PS00697   DNA_LIGASE_A1
IPR012309 ATP dependent DNA ligase, C-terminal (Domain)
 [219-318]  7.4e-14 PF04679
PF04679   DNA_ligase_A_C
IPR012310 ATP dependent DNA ligase, central (Domain)
 [26-202]  5.9e-22 PF01068
PF01068   DNA_ligase_A_M
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [205-337]  0.00043 G3DSA:2.40.50.140
G3DSA:2.40.50.140   no description
IPR016059 ATP-dependent DNA ligase, conserved site (Conserved_site)
 [32-40]  PS00697
PS00697   DNA_LIGASE_A1
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 345 amino acids
molecular mass 38,339.98 Da
pI 10.37
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.1
(35aa)
4.9
(17aa)
12.8
(44aa)
3.5
(12aa)
3.2
(11aa)
2.6
(9aa)
7
(24aa)
1.7
(6aa)
9
(31aa)
6.1
(21aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.1
(14aa)
0.6
(2aa)
0.3
(1aa)
3.5
(12aa)
0.9
(3aa)
4.1
(14aa)
1.7
(6aa)
11.3
(39aa)
7.2
(25aa)
5.5
(19aa)

open this sectionSequence