CDS Information : SLG_10370
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
1,098,772 / 1,097,735 / - |
| Location |
complement(1097735..1098772) |
| Type |
CDS |
| Length |
1,038 bp (345 aa) |
Annotation
| Product |
putative DNA ligase |
| Gene name |
|
| Functional category |
Information storage and processing
- [L] Replication, recombination and repair |
| EC number |
6.5.1.1 |
| Note |
This ORF product lacks the DNA ligase, N-terminal domain (IPR012308) in the N-terminal region. |
| KEGG pathway |
|
| Sequence feature |
|
| References |
Uniprot:Q9HH07 Pubmed:15251207 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
345 amino acids |
| molecular mass |
38,339.98 Da |
| pI |
10.37 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
10.1
(35aa) | 4.9
(17aa) | 12.8
(44aa) | 3.5
(12aa) | 3.2
(11aa) | 2.6
(9aa) | 7
(24aa) | 1.7
(6aa) | 9
(31aa) | 6.1
(21aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
4.1
(14aa) | 0.6
(2aa) | 0.3
(1aa) | 3.5
(12aa) | 0.9
(3aa) | 4.1
(14aa) | 1.7
(6aa) | 11.3
(39aa) | 7.2
(25aa) | 5.5
(19aa) |
|
Sequence
>SLG_10370 putative DNA ligase
ATGGCGGGCAGGCTGCGCGCCTGGTTTGATGACCTACTCCCGATGGAAGCCAGGCTCGTC
GCGGAGCTTCCATCGGGGGACGGATGGCAGTTCGAGCCCAAGTGGGACGGGTTCCGGGTG
CTGATCCTCAAGGATGGGCCGGATGTGGAGCTCAAGTCCAAGTCGGGAAAGAGCCTGACC
CGCTTCTTTCCCGAACTTGCCGCCGCCATCGGCGCTCTGGGTGATCGGGCGTTGAGCCTC
GACGGGGAGATCATCCTGCCGGTGAGCGACATGCTGTCCTTCGACGCCCTGCAGCAGCGC
CTTCATCCCGCCGCGTCGCGGATCGCGCGCCTCTCGCGCGAAACTCCCGCCGAGATCATG
CTGTTCGATGTGCTCCATCGCGGCAGCACCCGCCTGGCGGACCGCCCCCTCGAAGAACGC
CGCACGGCCCTGGAAGCCTGGCATGCCACCATCCGCTCTCCCGTCCTTCACCTCTCTCCA
ATGACACGCGATGCCAGGCAGGCGAAGGCCTGGCTCGACCGGACCGGCGGCGCACTGGAC
GGCATTGTCGCAAAGCGGCGCGACGCTCCATATCGCGGCGGAGAGCGCGCCATGGCCAAG
ATCAAGCAGCAGCGCACGGCCGACTGCGTGGTCGGCGGCTTTCGGGAAGCCGACGGCGCG
GTCGTTTCCCTGCTCCTCGGCCTCTATGGGCCGGACGGGAAGCTCAATCATGTCGGCTTC
ACCAGCGCGATAGCGCGCGACCAGCGCAGGGAACTTCGAGACCGTCTGTTGCCGCTCGTC
GCGCCGCCCGGCTTCACCGGCAAGGCGCCTGGCGGGCCGAGCCGGTGGAGCGGAAAGCGC
ACCTCCGACTGGTTGCCGATCAAGCCCTCGCTGGTCGTCGAGGTCCGCTACGATCAGGTG
ACCGGCGGGCGATTCCGCCACGGCACGCGGCTGCTGCGCTGGCGGCCGGACAAAGCGCCG
GAACAATGCACGAGCGACCAGCTGGAACAGCCGCTCTCACCTGCCCAGCTGGGCAGTCTG
ATCCGGGAGTGGGAATGA
>SLG_10370 putative DNA ligase
MAGRLRAWFDDLLPMEARLVAELPSGDGWQFEPKWDGFRVLILKDGPDVELKSKSGKSLT
RFFPELAAAIGALGDRALSLDGEIILPVSDMLSFDALQQRLHPAASRIARLSRETPAEIM
LFDVLHRGSTRLADRPLEERRTALEAWHATIRSPVLHLSPMTRDARQAKAWLDRTGGALD
GIVAKRRDAPYRGGERAMAKIKQQRTADCVVGGFREADGAVVSLLLGLYGPDGKLNHVGF
TSAIARDQRRELRDRLLPLVAPPGFTGKAPGGPSRWSGKRTSDWLPIKPSLVVEVRYDQV
TGGRFRHGTRLLRWRPDKAPEQCTSDQLEQPLSPAQLGSLIREWE
![[32-40] PS00697](/dogan/img/P.gif "[32-40] PS00697"){kind=small}
![[219-318] 7.4e-14 PF04679](/dogan/img/H.gif "[219-318] 7.4e-14 PF04679"){kind=small}
![[205-337] 0.00043 G3DSA:2.40.50.140](/dogan/img/X2.gif "[205-337] 0.00043 G3DSA:2.40.50.140"){kind=small}