CDS Information : SLG_11070
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
1,177,464 / 1,175,848 / - |
| Location |
complement(1175848..1177464) |
| Type |
CDS |
| Length |
1,617 bp (538 aa) |
Annotation
| Product |
DNA ligase |
| Gene name |
lig |
| Functional category |
Information storage and processing
- [L] Replication, recombination and repair |
| EC number |
6.5.1.1 |
| Note |
|
| KEGG pathway |
KO:K10747 |
| Sequence feature |
|
| References |
Family/Domain:IPR000977
Uniprot:Q9HHC4 Pubmed:11053387 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
538 amino acids |
| molecular mass |
59,923.55 Da |
| pI |
6.01 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
14.1
(76aa) | 5
(27aa) | 14.3
(77aa) | 3.3
(18aa) | 3.2
(17aa) | 3.5
(19aa) | 6.3
(34aa) | 1.3
(7aa) | 6.7
(36aa) | 4.6
(25aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
3.9
(21aa) | 0.2
(1aa) | 0.9
(5aa) | 2.8
(15aa) | 1.3
(7aa) | 2.6
(14aa) | 1.3
(7aa) | 10.4
(56aa) | 7.8
(42aa) | 6.3
(34aa) |
|
Sequence
>SLG_11070 DNA ligase
TTGAGGCGTTTCGCCGATCTTTTCCAGCGTCTCGACCGGAGCACCGGCACGCTCGAGAAA
CGCGCCGCACTGGTGCGCTATTTCCGGGATGCGCCGCCTCGGGATGCGGCATGGGCGCTG
TGGCTGCTTGCCGGCAACAAGATCGGCGGCCCGCGCGCGAAACTGGCGGGCAGCCGCGAA
CTTCGCGCCTGGATTGCGGAGACGAGCGGCACGCCCGAATGGCTGGTGGACGCGAGCTAC
GATCAGGTCGGCGATCTGGCCGAAACGCTGGCCCTGTTGCTCGATGATCCGGCCGACGCC
AGCGAGGACATTCCGCTTGCGACATGGATCGAGGACATATTGCTGCCCGTCGCCAACGCG
CCGGAGGCCGACCGCAGAGCCGTTGTCGAGCGGGCCTGGTGCACGCTGCCCTTCGGCGAG
CGCTTCCTGTTCAACAAGCTGCTGACGGGCTCATTGCGGGTCGGCGTCTCGCGCGGGCTG
GTGCAGCAGGCACTCGCTGAACTCTCCGGCGTGGAGATCGCGCTGATCGCGCAGCGCATG
CTCGGCGCATGGGCTCCGTCTGCCGACTTCCTCGCCGGCCTTCTCTCCCCCGAGCCGCAG
CCGGGCGACATGGCCTCGCCTTTCCCCTTCTTCCTCGCCTCGCCGCTCGACCAGCCGGCC
GAGGCGCTGGGGCCCCTCGAGGACTGGCTGGTCGAGTGGAAGTGGGACGGCATCCGCCTT
CAACTCATCCGCCGCGCCGACGACCTCGCCTTGTGGTCGCGTGGCGAGGAGAGGCTGGAC
GGACGGTTCCCGGAGATCGAGGCGGCAGCAGCGCTGCTCCCCCGGCACGCGGTGATCGAC
GGCGAGTTGCTGGCCTGGGACGCCGGGGACGCCCCCCTCCCCTTCACGGCGCTCCAGACC
CGCATCCAGCGCCTCAAGCCCGGTGCGCGCACGCTGGCGCAGGCCCCGGCGCGCGTCCTT
GCCTATGATCTTCTCGAACTGGACGGGACGGACCTGCGCGATCGCCCGCTGACGGATCGA
CGTGCAGCGCTCGCGGCGTTGCTCGCGACACTGGACGACCGGCGCATCGCCCTCTCGCCC
GAGATCATGGCCGACAACTGGGCGCACGCGGCGGCCCTGCGCGAGATGGCGCGCGAACGC
GGCGTGGAAGGGCTCATGCTCAAGCGCCGATCATCGCCTTATCAGCATGGCCGCCGGCGC
GGGGACTGGTGGAAATGGAAAGTCGATCCGATGACGATCGACGCCGTGCTGATCTATGCG
CAGTCAGGGCACGGCCGGCGCAGCACGCTCCATACGGATTATACCTTCGGCCTGTGGGAC
GGCGACGTGCTGGTGCCTGTCGCCAAGGCCTATTCCGGCCTGTCCGATGCGGAGATCCTG
CAGGTCGACCAATGGGTCCGCAAGCACACGCGTGAACGGTTCGGCCCCGTCCGTTCCGTG
GAACCGGAACTGGTCTTCGAGCTGGCGTTCGAAGCGGTCAATCTCTCGCGCCGTCACAAA
TCGGGCGTCGCGGTTCGCTTTCCCCGTATCCTGCGCTGGCGGACGGACAAGCCGGCGAGC
GAAGCGGACCGGCTGGAGACACTGAAAGCCCTGGCGCTGCCTTCCGCCGGGGGCTGA
>SLG_11070 DNA ligase
MRRFADLFQRLDRSTGTLEKRAALVRYFRDAPPRDAAWALWLLAGNKIGGPRAKLAGSRE
LRAWIAETSGTPEWLVDASYDQVGDLAETLALLLDDPADASEDIPLATWIEDILLPVANA
PEADRRAVVERAWCTLPFGERFLFNKLLTGSLRVGVSRGLVQQALAELSGVEIALIAQRM
LGAWAPSADFLAGLLSPEPQPGDMASPFPFFLASPLDQPAEALGPLEDWLVEWKWDGIRL
QLIRRADDLALWSRGEERLDGRFPEIEAAAALLPRHAVIDGELLAWDAGDAPLPFTALQT
RIQRLKPGARTLAQAPARVLAYDLLELDGTDLRDRPLTDRRAALAALLATLDDRRIALSP
EIMADNWAHAAALREMARERGVEGLMLKRRSSPYQHGRRRGDWWKWKVDPMTIDAVLIYA
QSGHGRRSTLHTDYTFGLWDGDVLVPVAKAYSGLSDAEILQVDQWVRKHTRERFGPVRSV
EPELVFELAFEAVNLSRRHKSGVAVRFPRILRWRTDKPASEADRLETLKALALPSAGG
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