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CDS Information : SLG_11070

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close this sectionGenomic map

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Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

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Overview 
Genome

close this sectionLocation

Organism Sphingobium sp. SYK-6 (= NBRC 103272)
Replicon chromosome
Start / Stop / Direction 1,177,464 / 1,175,848 / -
Location complement(1175848..1177464)
Type CDS
Length 1,617 bp (538 aa)

close this sectionAnnotation

Product DNA ligase
Gene name lig
Functional category Information storage and processing
- [L] Replication, recombination and repair
EC number 6.5.1.1
Note
KEGG pathway KO:K10747
Sequence feature

234 (a.a.)ACT_SITE


References Family/Domain:IPR000977
Uniprot:Q9HHC4 Pubmed:11053387

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0B8L6M1_9GAMMThermostable DNA ligaseAlignment
2E=0Q8PB36_XANCPDNA ligaseAlignment
3E=0Q4USH4_XANC8DNA ligaseAlignment
4E=0B0RX10_XANCBATP-dependent DNA ligase, probableAlignment
5E=0Q3BVT8_XANC5ATP-dependent DNA ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR012308 DNA ligase, N-terminal (Domain)
 [2-166]  8.4e-14 PF04675
PF04675   DNA_ligase_A_N
IPR012309 ATP dependent DNA ligase, C-terminal (Domain)
 [431-517]  2.7e-10 PF04679
PF04679   DNA_ligase_A_C
IPR012310 ATP dependent DNA ligase, central (Domain)
 [211-407]  1.4e-33 PF01068
PF01068   DNA_ligase_A_M
 [310-440]  16.158 PS50160
PS50160   DNA_LIGASE_A3
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [411-536]  3.5e-31 G3DSA:2.40.50.140
G3DSA:2.40.50.140   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 538 amino acids
molecular mass 59,923.55 Da
pI 6.01
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.1
(76aa)
5
(27aa)
14.3
(77aa)
3.3
(18aa)
3.2
(17aa)
3.5
(19aa)
6.3
(34aa)
1.3
(7aa)
6.7
(36aa)
4.6
(25aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.9
(21aa)
0.2
(1aa)
0.9
(5aa)
2.8
(15aa)
1.3
(7aa)
2.6
(14aa)
1.3
(7aa)
10.4
(56aa)
7.8
(42aa)
6.3
(34aa)

open this sectionSequence