CDS Information : SLG_14580
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
1,585,628 / 1,586,887 / + |
| Location |
1585628..1586887 |
| Type |
CDS |
| Length |
1,260 bp (419 aa) |
Annotation
| Product |
aspartate kinase |
| Gene name |
lysC |
| Functional category |
Metabolism
- [E] Amino acid transport and metabolism |
| EC number |
2.7.2.4 |
| Note |
|
| KEGG pathway |
|
| Sequence feature |
|
| References |
|
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
419 amino acids |
| molecular mass |
44,985.42 Da |
| pI |
4.64 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
11.9
(50aa) | 11.2
(47aa) | 6.7
(28aa) | 7.2
(30aa) | 1.9
(8aa) | 0.5
(2aa) | 2.9
(12aa) | 3.8
(16aa) | 7.6
(32aa) | 6.7
(28aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
5.7
(24aa) | 0.5
(2aa) | 2.1
(9aa) | 3.1
(13aa) | 1.4
(6aa) | 4.5
(19aa) | 1.2
(5aa) | 6.2
(26aa) | 6.4
(27aa) | 8.4
(35aa) |
|
Sequence
>SLG_14580 aspartate kinase
ATGGCGCGAATTGTGATGAAATTTGGCGGCACGTCGATGGCCGGCATGGAACGCATCCGC
AACGTCGCAATGCGCGTCAAGCACGAGGTCGGCCTTGGCAATGAGGTCGCGGTCGTGGTT
TCCGCCATGGCGGGCGAGACGGACCGGCTTGTCGGCTTCTGCAAGGAAGCGAGCCCGCTC
TACGACGAGGCGGAATATGACGTGGTCGTCGCTTCGGGCGAACAGGTCACGTCCGGCCTG
CTGGCGATGACGCTCAAGGCGATCGGCGTGGACGCGAGGAGCTGGCTTGGCTGGCAGCTT
CCCATCCGCACGGTGGAAGCGCACAGCAAGGCGCGCATCGAGGACATCGAAACGCAGGCG
CTGTTGCAGGCGATGGCAGCCGGACAGGTCGCGGTGATTCCCGGCTTCCAGGGTCAGATG
GCGGATGGCCGCGTCTCCACGCTCGGCCGTGGCGGCTCGGATACCTCCGCTGTCGCCATC
GCGGCCGCCGTGAAGGCCGAGAGATGCGATATCTATACGGACGTGGATGGCGTCTACACG
ACCGATCCGCGCATCGTGAGCCGGGCCCGCAAGCTCAACAAGGTCACCTATGAGGAAATG
CTGGAGCTGGCGAGCGTTGGCTCGAAAGTGCTGCAGACCCGCTCTGTCGCGCTCGCGATG
AAGGAGAAGGTGCGCGTGCAGGTGCTCTCCTCGTTCGAGCAACCCGGCAATGATCCCGAA
CCCGGCACGATGATCGTCAGCGAAGAAGAAATCGAGGAAAGCGACATGGAACGGCAGCTC
ATCACCGGCATCGCGCACGACAAGAACGAGGCCAAGATCATCGTGACCCGCGTGCCCGAC
AAGCCGGGCGCCGTGGCCAGCATCTTCCTGCCGCTTGCCGAGGCGAGCATCAATGTCGAC
ATGATCATCCAGAACGACAGCAAGGACAATGCGGAGACGGACGTCACCTTCACCGTGCCG
CGCGCCGACCTTGCCCGCAGTGTCGACATCCTCGAGGCACGCAAGGAAAGCATCGGCTTC
CGGCGCATCATCACGGACGCGGAGGTCGCGAAGATTAGCGTGGTGGGCGTAGGCATGCGC
AGCCATGCCGGTGTCGCCGCGCTGATGTTCAAGACTCTGGCCGATCGCGGCATCAATATC
GAGGCGATCTCGACGAGCGAGATCAAGGTCTCCGTGCTGATCGACGAGGACGAGACGGAA
CTGGCGGTTCGCGTGCTGCACACGGCTTATGGCCTGGATGGGGACCAGCCGGCGGGTTGA
>SLG_14580 aspartate kinase
MARIVMKFGGTSMAGMERIRNVAMRVKHEVGLGNEVAVVVSAMAGETDRLVGFCKEASPL
YDEAEYDVVVASGEQVTSGLLAMTLKAIGVDARSWLGWQLPIRTVEAHSKARIEDIETQA
LLQAMAAGQVAVIPGFQGQMADGRVSTLGRGGSDTSAVAIAAAVKAERCDIYTDVDGVYT
TDPRIVSRARKLNKVTYEEMLELASVGSKVLQTRSVALAMKEKVRVQVLSSFEQPGNDPE
PGTMIVSEEEIEESDMERQLITGIAHDKNEAKIIVTRVPDKPGAVASIFLPLAEASINVD
MIIQNDSKDNAETDVTFTVPRADLARSVDILEARKESIGFRRIITDAEVAKISVVGVGMR
SHAGVAALMFKTLADRGINIEAISTSEIKVSVLIDEDETELAVRVLHTAYGLDGDQPAG
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