CDS Information : SLG_23650
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
2,550,521 / 2,548,623 / - |
| Location |
complement(2548623..2550521) |
| Type |
CDS |
| Length |
1,899 bp (632 aa) |
Annotation
| Product |
putative M2 family peptidase |
| Gene name |
|
| Functional category |
Unannotated |
| EC number |
|
| Note |
|
| KEGG pathway |
|
| Sequence feature |
|
| References |
Merops:M02
Family/Domain:IPR001548 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
|
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
632 amino acids |
| molecular mass |
70,201.60 Da |
| pI |
6.34 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
12.5
(79aa) | 4.4
(28aa) | 8.2
(52aa) | 4.3
(27aa) | 4.3
(27aa) | 2.7
(17aa) | 5.7
(36aa) | 3
(19aa) | 8.4
(53aa) | 4.1
(26aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
5.2
(33aa) | 0.9
(6aa) | 2.8
(18aa) | 4.6
(29aa) | 4
(25aa) | 5.2
(33aa) | 2.1
(13aa) | 5.5
(35aa) | 7.4
(47aa) | 4.6
(29aa) |
|
Sequence
>SLG_23650 putative M2 family peptidase
ATGCACATATTGGTATCGCGCATCGCCCTTTCGGCGGCGATGCTGCTTGCCGCGCCCGCC
GCGGTGCTGGCGCAGGCCGGACAGGGCCAGAAGGCGCCGGACAGCGCGCAGGCGGACGCA
TTCGTGGCGGCCGCCGAGAAGGAAGCTTTCGACTATAGCGTGGACGCCAGCCGGATCATG
TGGGTCAACGCGACTCACATCACGGACGATACCGACGCGCTGGCCGCGCAGGCCGGCGCG
AAGGGCACGGAGATGGCCGTCCGCTTCGCGCTTGAGGCCGCGAAATACGAGCAGGTGCCC
GGCCTTTCCTTCGATACCAAGCGCAAGCTCGACATCATGCGCTCGGGCATCGTTCTCCCC
GCCCCGACGAAGCCCGGCGCGGCGGCCGAGCTCAACGAGATCGCGACCCGGCTGCAATCC
ACTTATGGCAAGGGCCGCGGCACGCTGGACGGCAAGGAACTGACCGGCAGCGACATCGAG
GCGGAGATGGCCAATCTCTCGCACACGCCCGCGCAATTCTCCGAGATGTGGACGAGCTGG
CACGATCGGGTCGGCGCGCCGATGAAGGCGGATTATGTCCGCCTCGTCGACATCGCCAAT
GAAGGCGCGAAGGAGCTGGGCTTTGCCGATGCCGGCGCGATGTGGCGATCCGGCTATGAC
ATGCCGCCCGATGAGTTCGCCGCGCTGACCGAAGCGCTCTGGCAGGAAGTGAAGCCGCTC
TACGATGCGCTGCACTGCTACACGCGCACCAAGCTGAACGAGAAATATGGCGATGCGGTG
CAGTCGCCCACCGGCCCCATCCGCGCCGATCTGCTCGGCAATATGTGGGCGCAGGAATGG
GGCAATATCTACCCCATCGTGGCGCCCGCCGGCACCGGCGACCTGGGCTATGACATTGGC
GACCTGCTGCGCGCCAAGGGCTTCGTCCAGACCACGCCGCAGACGATCGACACGCCGGAC
ACGCCCGAGACCCAGCGGCGCGGCTATTGGGAAAAGCAGATGTTCCGCATCGGCGAGGGC
TTCTATTCCTCGCTCGGCTTCGATCCGCTGCCCGAGACCTTCTGGCAGCGCACCCAGTTC
ATCGCGCCGCGCGATCGCGAGGTGGTCTGCCATGCCTCCGCCTGGGACGTCGACAATCGC
AACGACATCCGCGTGAAGATGTGCACCAAGGTGAACAGCGACGATTTCGTCACCATTCAC
CACGAGCTCGGCCACAATTACTACCAGCGCGCATACCAGAAGCACGGCTATCTCTACCTC
AACGGCGCCAATGACGGCTTCCACGAGGCGATCGGCGATTTCATCGCGCTGTCCATCACG
CCGCAATATCTGGTGCAGATCGGGCTGCTCGATCCCGCCAAGGTGCCGAGCGCGGACAAG
GATATCGGCCTGCTGCTGCGGCAGGCGATGGACAAGGTCGCTTTCCTGCCCTTCGGCCTG
CTGATCGATCGCTGGCGCTGGGGCGTGTTCGACGGATCGATCCGCCCGGCGGACTATAAC
AAGGCCTGGACGGACATGCGCCTGCGCTATCAGGGCATCGTGCCGCCGACGGATCGCCCG
GCCGACAGCTTCGATCCCGGCGCGAAGTTCCATGTGCCGGGCAACACGCCCTACACGCGC
TACTTCCTCGCCCGCATCCTCCAGTTCCAGTTCTACGAGGCGGCTTGCCGTCAGGCCGGC
TGGAAAGGGCCGCTCCACCGCTGCTCCTTCTACGGGAACAAGGAAGTCGGCAAGCGGCTC
AACGCCATGCTGGAGATGGGCGCATCCAAGCCCTGGCCGGACGCGCTGGAAGCCTTCACC
GGCAGCCGCAAGATGAGCGGCAAGGCCATGCTCGCTTATTTCGCCCCGCTCGGCAAATGG
CTCGACCAGCAGAACAAGGGCAAGCAGTGCGGCTGGTGA
>SLG_23650 putative M2 family peptidase
MHILVSRIALSAAMLLAAPAAVLAQAGQGQKAPDSAQADAFVAAAEKEAFDYSVDASRIM
WVNATHITDDTDALAAQAGAKGTEMAVRFALEAAKYEQVPGLSFDTKRKLDIMRSGIVLP
APTKPGAAAELNEIATRLQSTYGKGRGTLDGKELTGSDIEAEMANLSHTPAQFSEMWTSW
HDRVGAPMKADYVRLVDIANEGAKELGFADAGAMWRSGYDMPPDEFAALTEALWQEVKPL
YDALHCYTRTKLNEKYGDAVQSPTGPIRADLLGNMWAQEWGNIYPIVAPAGTGDLGYDIG
DLLRAKGFVQTTPQTIDTPDTPETQRRGYWEKQMFRIGEGFYSSLGFDPLPETFWQRTQF
IAPRDREVVCHASAWDVDNRNDIRVKMCTKVNSDDFVTIHHELGHNYYQRAYQKHGYLYL
NGANDGFHEAIGDFIALSITPQYLVQIGLLDPAKVPSADKDIGLLLRQAMDKVAFLPFGL
LIDRWRWGVFDGSIRPADYNKAWTDMRLRYQGIVPPTDRPADSFDPGAKFHVPGNTPYTR
YFLARILQFQFYEAACRQAGWKGPLHRCSFYGNKEVGKRLNAMLEMGASKPWPDALEAFT
GSRKMSGKAMLAYFAPLGKWLDQQNKGKQCGW
![[230-257] 6.5e-29 PR00791](/dogan/img/F.gif "[230-257] 6.5e-29 PR00791"){kind=small}
![[30-632] 2.6e-153 PF01401](/dogan/img/H.gif "[30-632] 2.6e-153 PF01401"){kind=small}
![[121-632] 6.6e-135 G3DSA:1.10.1370.10](/dogan/img/X2.gif "[121-632] 6.6e-135 G3DSA:1.10.1370.10"){kind=small}
![[1-24] 1 Signal](/dogan/img/R.gif "[1-24] 1 Signal"){kind=small}