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CDS Information : SLG_28000

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close this sectionGenomic map

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Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

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Overview 
Genome

close this sectionLocation

Organism Sphingobium sp. SYK-6 (= NBRC 103272)
Replicon chromosome
Start / Stop / Direction 3,023,328 / 3,021,928 / -
Location complement(3021928..3023328)
Type CDS
Length 1,401 bp (466 aa)

close this sectionAnnotation

Product alkaline phosphatase
Gene name phoA
Functional category Metabolism
- [P] Inorganic ion transport and metabolism
EC number 3.1.3.1
Note
KEGG pathway map:00790 KO:K01077
Sequence feature
References Uniprot:P00634 Pubmed:10085061

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0PPB_ESCF3Alkaline phosphataseAlignment
2E=0C6UBJ5_ECOBRBacterial alkaline phosphataseAlignment
3E=0C6ELK4_ECOBDAlkaline phosphatase
Bacterial alkaline phosphatase
Alignment
4E=0C5W2P5_ECOBBPhoA proteinAlignment
5E=0B3XH65_ECOLXAlkaline phosphataseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR001952 Alkaline phosphatase (Family)
 [61-81]  4.3e-37 PR00113 [118-133]  4.3e-37 PR00113 [155-175]  4.3e-37 PR00113 [218-228]  4.3e-37 PR00113 [315-344]  4.3e-37 PR00113
PR00113   ALKPHPHTASE
 [62-422]  8.1e-113 PF00245 [426-465]  1.5e-06 PF00245
PF00245   Alk_phosphatase
 [20-466]  1.5e-124 G3DSA:3.40.720.10
G3DSA:3.40.720.10   no description
 [62-466]  3.4e-181 SM00098
SM00098   no description
 [118-126]  PS00123
PS00123   ALKALINE_PHOSPHATASE
IPR017849 Alkaline phosphatase-like, alpha/beta/alpha (Domain)
 [20-466]  1.5e-124 G3DSA:3.40.720.10
G3DSA:3.40.720.10   no description
IPR017850 Alkaline-phosphatase-like, core domain (Domain)
 [20-466]  1.2e-133 SSF53649
SSF53649   Alkaline phosphatase-like
IPR018299 Alkaline phosphatase, active site (Active_site)
 [118-126]  PS00123
PS00123   ALKALINE_PHOSPHATASE
SignalP
 [1-20]  1 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI
 [1-23]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 466 amino acids
molecular mass 48,725.84 Da
pI 6.29
aa composition
AlaValLeuIlePheTrpProMetGlySer
16.3
(76aa)
5.2
(24aa)
9
(42aa)
5.2
(24aa)
1.9
(9aa)
0.6
(3aa)
3.9
(18aa)
1.7
(8aa)
10.7
(50aa)
4.5
(21aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.9
(37aa)
0.9
(4aa)
3.4
(16aa)
4.3
(20aa)
2.6
(12aa)
3.4
(16aa)
2.4
(11aa)
5.6
(26aa)
5.4
(25aa)
5.2
(24aa)

open this sectionSequence