CDS Information : SLG_36210
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| [B] Chromatin structure and dynamics |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [O] Posttranslational modification, protein turnover, chaperones |
| [Y] Nuclear structure |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [Z] Cytoskeleton |
| [W] Extracellular structures |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Sphingobium sp. SYK-6 (= NBRC 103272) |
| Replicon |
chromosome |
| Start / Stop / Direction |
3,891,461 / 3,892,072 / + |
| Location |
3891461..3892072 |
| Type |
CDS |
| Length |
612 bp (203 aa) |
Annotation
| Product |
superoxide dismutase [Fe] |
| Gene name |
sodB |
| Functional category |
Metabolism
- [P] Inorganic ion transport and metabolism |
| EC number |
1.15.1.1 |
| Note |
|
| KEGG pathway |
KO:K04564 |
| Sequence feature |
|
| References |
Uniprot:P0AGD3 Pubmed:3305077,6346322,6087358 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
| IPR001189 Manganese and iron superoxide dismutase (Family) |  ![[6-17] 4.7e-16 PR01703](/dogan/img/F.gif "[6-17] 4.7e-16 PR01703")
| PR01703 MNSODISMTASE | ![[1-196] 1.3e-91 PIRSF000349](/dogan/img/S.gif "[1-196] 1.3e-91 PIRSF000349")
| PIRSF000349 Superoxide dismutase, Mn/Fe specific | ![[84-193] 5.5e-36 SSF54719](/dogan/img/B.gif "[84-193] 5.5e-36 SSF54719")
| SSF54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain | ![[88-190] 3.8e-33 PF02777](/dogan/img/H.gif "[88-190] 3.8e-33 PF02777")
| PF02777 Sod_Fe_C |
| SSF46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| PF00081 Sod_Fe_N | ![[156-163] PS00088](/dogan/img/P.gif "[156-163] PS00088")
| PS00088 SOD_MN | | IPR019831 Manganese/iron superoxide dismutase, N-terminal (Domain) |
| PF00081 Sod_Fe_N |
| SSF46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain | | IPR019832 Manganese/iron superoxide dismutase, C-terminal (Domain) |
| SSF54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| PF02777 Sod_Fe_C | | IPR019833 Manganese/iron superoxide dismutase, binding site (Binding_site) |
| PS00088 SOD_MN |
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
203 amino acids |
| molecular mass |
22,388.02 Da |
| pI |
5.23 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
13.3
(27aa) | 4.9
(10aa) | 9.4
(19aa) | 3.4
(7aa) | 5.4
(11aa) | 2.5
(5aa) | 4.4
(9aa) | 1
(2aa) | 7.9
(16aa) | 3.4
(7aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
5.9
(12aa) | 1
(2aa) | 5.4
(11aa) | 3.4
(7aa) | 3.4
(7aa) | 5.4
(11aa) | 4.9
(10aa) | 2
(4aa) | 5.9
(12aa) | 6.9
(14aa) |
|
Sequence
>SLG_36210 superoxide dismutase [Fe]
ATGGCATTCACCCTTCCCGACCTTCCCTATGCGAAAACGGCTTTCGGCGAAGACATGTCG
GCCGAGACGTTCGACTATCATCACGGCAAGCATCACAATGCCTATGTGACGAAAGCGAAC
GAGCTGGTCGCCGCCGACCCGGCGCTGCAGGGCAAGTCGCTGGTCGAGCTGATCCGCACC
GCCAAGGGCGGCCTGTTCAACCAGGTCGGCCAGATCTGGAACCACAGCTTCTTCTGGCAG
TGCCTCTCGCCCGAGACGCAGGAGCCGACCGGCAAGCTCGCCGAGCTGATCCAGGAAGGC
TTCGGCTCGACGGACGCGCTGATCGAGAAGCTGAAGGCAGAGGCAGTGGGCCATTTCGCC
AGCGGCTGGGCAGCGCTCAACCTCACCGACGGCAAGCTGGAAGTGACCAGCTATCATGAT
GCCGACTGCCCCGTCGCGCATGGCGCCACGCCGCTGTTCATCCTCGATGTGTGGGAACAT
GCCTATTATATCGACTATCGCAACGCGCGTCCCAACTTCGCCGACACGATCCTCAAGAAG
CATGTGAACTGGGCCTTCGTGGCCGAGAATCTCGACGGCAACGGCGCCGAGCGCGCCAAC
CAGCCGGGCTGA
>SLG_36210 superoxide dismutase [Fe]
MAFTLPDLPYAKTAFGEDMSAETFDYHHGKHHNAYVTKANELVAADPALQGKSLVELIRT
AKGGLFNQVGQIWNHSFFWQCLSPETQEPTGKLAELIQEGFGSTDALIEKLKAEAVGHFA
SGWAALNLTDGKLEVTSYHDADCPVAHGATPLFILDVWEHAYYIDYRNARPNFADTILKK
HVNWAFVAENLDGNGAERANQPG
