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CDS Information : SLG_36210

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close this sectionGenomic map

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Sphingobium sp. SYK-6 (= NBRC 103272) chromosome

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Overview 
Genome

close this sectionLocation

Organism Sphingobium sp. SYK-6 (= NBRC 103272)
Replicon chromosome
Start / Stop / Direction 3,891,461 / 3,892,072 / +
Location 3891461..3892072
Type CDS
Length 612 bp (203 aa)

close this sectionAnnotation

Product superoxide dismutase [Fe]
Gene name sodB
Functional category Metabolism
- [P] Inorganic ion transport and metabolism
EC number 1.15.1.1
Note
KEGG pathway KO:K04564
Sequence feature

27 (a.a.)METAL
75 (a.a.)METAL
156 (a.a.)METAL
160 (a.a.)METAL


References Uniprot:P0AGD3 Pubmed:3305077,6346322,6087358

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=5e-90Q1NGC4_9SPHNSuperoxide dismutaseAlignment
2E=8e-62Q5NNM6_ZYMMOSuperoxide dismutaseAlignment
3E=8e-62C8WAS0_ZYMMNSuperoxide dismutaseAlignment
4E=1e-61C5TGI0_ZYMMOSuperoxide dismutaseAlignment
5E=1e-58A5VAG9_SPHWWSuperoxide dismutaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR001189 Manganese and iron superoxide dismutase (Family)
 [6-17]  4.7e-16 PR01703 [27-40]  4.7e-16 PR01703 [66-79]  4.7e-16 PR01703 [118-126]  4.7e-16 PR01703 [154-166]  4.7e-16 PR01703
PR01703   MNSODISMTASE
 [1-196]  1.3e-91 PIRSF000349
PIRSF000349   Superoxide dismutase, Mn/Fe specific
 [84-193]  5.5e-36 SSF54719
SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain
 [88-190]  3.8e-33 PF02777
PF02777   Sod_Fe_C
 [1-84]  2.3e-31 SSF46609
SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain
 [3-83]  2.1e-23 PF00081
PF00081   Sod_Fe_N
 [156-163]  PS00088
PS00088   SOD_MN
IPR019831 Manganese/iron superoxide dismutase, N-terminal (Domain)
 [3-83]  2.1e-23 PF00081
PF00081   Sod_Fe_N
 [1-84]  2.3e-31 SSF46609
SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain
IPR019832 Manganese/iron superoxide dismutase, C-terminal (Domain)
 [84-193]  5.5e-36 SSF54719
SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain
 [88-190]  3.8e-33 PF02777
PF02777   Sod_Fe_C
IPR019833 Manganese/iron superoxide dismutase, binding site (Binding_site)
 [156-163]  PS00088
PS00088   SOD_MN
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 203 amino acids
molecular mass 22,388.02 Da
pI 5.23
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.3
(27aa)
4.9
(10aa)
9.4
(19aa)
3.4
(7aa)
5.4
(11aa)
2.5
(5aa)
4.4
(9aa)
1
(2aa)
7.9
(16aa)
3.4
(7aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.9
(12aa)
1
(2aa)
5.4
(11aa)
3.4
(7aa)
3.4
(7aa)
5.4
(11aa)
4.9
(10aa)
2
(4aa)
5.9
(12aa)
6.9
(14aa)

open this sectionSequence