CDS Information : STMDT12_C00160
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| [O] Posttranslational modification, protein turnover, chaperones |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Salmonella enterica serovar Typhimurium T000240 |
| Replicon |
Chromosome |
| Start / Stop / Direction |
17,026 / 16,493 / - |
| Location |
complement(16493..17026) |
| Type |
CDS |
| Length |
534 bp (177 aa) |
Annotation
| Product |
hypothetical protein |
| Gene name |
|
| Functional category |
Poorly characterized
- [R] General function prediction only |
| EC number |
|
| Note |
COG3926 Putative secretion activating protein |
| KEGG pathway |
|
| Sequence feature |
|
| References |
Family/Domain:CDD-33711 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
177 amino acids |
| molecular mass |
19,890.32 Da |
| pI |
5.8 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
10.7
(19aa) | 5.6
(10aa) | 7.3
(13aa) | 7.3
(13aa) | 2.8
(5aa) | 4
(7aa) | 4
(7aa) | 1.1
(2aa) | 9.6
(17aa) | 2.8
(5aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
4.5
(8aa) | 1.1
(2aa) | 6.8
(12aa) | 2.3
(4aa) | 5.6
(10aa) | 4
(7aa) | 4.5
(8aa) | 4
(7aa) | 5.1
(9aa) | 6.8
(12aa) |
|
Sequence
>STMDT12_C00160 hypothetical protein
ATGAATCCAATTATAGATGGAATTATTGCGCTTGAAGGCGGTTACGTATTTAACCCTAAA
GATAAAGGCGGCGCCACCCATTGGGGCATTACCGAAGCCACGGCGCGAGCGCATGGCTAT
GCTGGCGATATGCGGGATCTGACCCACGCTGAAGCCTACGCGATTCTCGAAGAGGATTAC
TGGATAAAACCAGGTTTTGACGTCATCTCGACGCTATCGTGGCCAGTCTCCTTCGAGCTG
TGCGATGCGGCAGTCAACATAGGCGCTTACCACCCCAGCGCGTGGCTGCAACGCTGGTTG
AACGTCTTTAATCACGAAGGTAAACGCTACCCGGATATTCATGTGGATGGCAATATTGGC
CCGCGGACGCTTGCCGCTCTCGAACATTATTTGGCCTGGCGAGGCCAGGAAGGGGAAGCC
GTTTTGGTGAAAGCCCTCAATTGCAGTCAGGGCACGTACTACTTAAACGTTGCTGAGAAA
AACCACAATAACGAACAATTTATTTATGGCTGGATCAAGAATAGAGTGACCTAG
>STMDT12_C00160 hypothetical protein
MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDMRDLTHAEAYAILEEDY
WIKPGFDVISTLSWPVSFELCDAAVNIGAYHPSAWLQRWLNVFNHEGKRYPDIHVDGNIG
PRTLAALEHYLAWRGQEGEAVLVKALNCSQGTYYLNVAEKNHNNEQFIYGWIKNRVT
![[4-88] 2.1e-28 PF05838](/dogan/img/H.gif "[4-88] 2.1e-28 PF05838"){kind=small}