CDS Information : STMDT12_C00180
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| [O] Posttranslational modification, protein turnover, chaperones |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Salmonella enterica serovar Typhimurium T000240 |
| Replicon |
Chromosome |
| Start / Stop / Direction |
17,867 / 19,966 / + |
| Location |
17867..19966 |
| Type |
CDS |
| Length |
2,100 bp (699 aa) |
Annotation
| Product |
exochitinase |
| Gene name |
|
| Functional category |
Metabolism
- [G] Carbohydrate transport and metabolism |
| EC number |
|
| Note |
COG3325 Chitinase |
| KEGG pathway |
|
| Sequence feature |
|
| References |
Family/Domain:CDD-33134 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
699 amino acids |
| molecular mass |
76,598.74 Da |
| pI |
4.19 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
8.9
(62aa) | 7.2
(50aa) | 6.4
(45aa) | 4.4
(31aa) | 4.3
(30aa) | 2.3
(16aa) | 4.6
(32aa) | 1.6
(11aa) | 8.9
(62aa) | 7.9
(55aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
6.6
(46aa) | 0.4
(3aa) | 4.3
(30aa) | 3.6
(25aa) | 4.6
(32aa) | 5.6
(39aa) | 1.1
(8aa) | 2.4
(17aa) | 7.9
(55aa) | 7.2
(50aa) |
|
Sequence
>STMDT12_C00180 exochitinase
ATGGCTACAAGCAAACTGATTCAAGGCGATACAATTACTGAAACTACTCATGCAGCGAAT
GGTTTTGACCCTGCAACAAGCGATGATAAAATAAGCTATACTTCCGCTCGTGTTGCGAAA
CCGGTATACAATAAATATAAAAATTCCACGACTAAACCGAAGGTATTCGGTTATTACACC
GACTGGTCACAGTATGACAGCCGTCTGCAAGGCAATATGTCCCAACCGGGCCGTGGTTAT
GATTTAACCAAAGTTTCACCGACGGCTTATGACAAACTGATTTTTGGCTTTGTTGGCATC
ACCGGTTTCAGAAAAATTGATACAGAAGACCGCGATGTCGTAGCAGAAGCGGCAGCGCTG
TGCGGCAAAGTGAAATATGAGCCGACCTTCCTCGACCCATGGGGCGACTTCCAGTCTTAT
ATCAACCTCGGCTTTGATGTCAGCGGCTGGGATGTGGATCCGAAGACTGTAACTCAGTCT
AACGCCAAGGGTCTGCTGGGCGCGCTGCGTGATATGCAGGCAAAAGCGAAAGCCGCAGGT
CACACGCTGGCGCTCTCCATGAGTATCGGCGGCTGGAGCATGAGTAACGGGTTCCACGAA
ACCGCCGCTTCTGACTCTTCTCGTAAAATCTTCGCCAAAGGCGTGGTGAAACTGTTCAAA
CAGTTCCCGATGTTCAGCGAAGTGGATATTGACTGGGAATACCCGAACAATGAAGGGGCG
GGCAACCCGTTTGGTCCGGAAGATGGCGCTAACTACGCGCTGCTGATTGCCGAACTGCGT
AAACAGCTGGATTCCGCGGGTCTGAGCAATGTGAAGATCTCTATTGCCGCTTCTGCTGTC
ACTACTATTTTTGACTATGCGAAAGTAAAAGATCTGATGGCTGCCGGCCTGTATGGCATC
AACCTGATGACCTATGACTTTTTCGGTACGCCGTGGGCGGAAACGCTGGGCCACCACACC
AACCGCAAAGCGCTGGAAGAGGGCGGCTGGGCTGTCGAAACTATCGTTGATCACCTGCTG
GCAGAAGGTTTCTCCGCTGACCGTATCAACATCGGTTATGCCGGCTATACCCGTAACGCT
CGTCAGGTAGAAATTGAATCCCTGTCGCCGCTGAAAGGTTCTTACAACCCAGGTTCAGGC
CCTACTACCGGTTCCTTCGAATCCGGCACCAGCGAATGGTATGACGTCATTTATAGCTAC
CTGGATCTGGAAAACCAGAAAGGCCGTAACGGTTTCAACGTTTACACCGACCAGGTCGCT
GATGCTGACTACCTGTATAGCCCGGAATCCAAACTGTTTTTATCCCTGGATACGCCGCGT
ACTGTCAAAGCAAAAGGCGAATATGCAGCGAAACTGGGCCTGGGCGGCGTGTTTACCTGG
ACTATCGATCAGGACAACGGCGTGCTGGTTAACGCCGTGCGTGAAGGTCTGGGTTATGAA
ATCGAATCTGAAGTTATCGATATGGAACCGTTCTACTTTGAAGGTATCAATGTAGAAAAA
GATGAAGAGCAGAGCGACAGCGACGACGCGCAGAAGGTCAACCACGCGCCGAAAGCGGCG
ATTGAACTGATGGTTGTAGGCGGATCTACGGTACAGCTGTCTGGCGCAGGTTCTTCTGAT
GAAGATAACGATGAGTTGTCCTTTAGCTGGGGCGTGCCTTCTCAAATCGATGTGGCAGAC
AAAACGGCAGAAATCATTGAGGTTGTGGTACCGGAAGTTAGCGAAAAAACAGCCTTTCAG
TTCACCCTGTTTGTACGCGACTGCTACAACGAACCGTCCTCTCAACAGCGCTTTGTTCTG
ACGGCTGTGCCTGCGCTATCTCAGGTTCAACCGGAACCGGAAGAGGAAGAAGAGATTATC
GTTCCTGTACCGGACGAGGAAGAAGATACCACGCCGGCTGAGGATGATACGCCAGCAGAT
GACAAAACGTCACCTTACGCGCAGTGGGATGCTTCTACCGTTTATGGCGCAAACTGGGGT
TCTTTCGAAATCGTTAGCTGGAAAGGCCATAACTATCAGGTGAAATGGTGGTCTATGGGC
AACCAGCCTGACCTGAACTGCGGTGTCGGCGGTGCATGGACCGATCTTGGCGCTTACTAA
>STMDT12_C00180 exochitinase
MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYNKYKNSTTKPKVFGYYT
DWSQYDSRLQGNMSQPGRGYDLTKVSPTAYDKLIFGFVGITGFRKIDTEDRDVVAEAAAL
CGKVKYEPTFLDPWGDFQSYINLGFDVSGWDVDPKTVTQSNAKGLLGALRDMQAKAKAAG
HTLALSMSIGGWSMSNGFHETAASDSSRKIFAKGVVKLFKQFPMFSEVDIDWEYPNNEGA
GNPFGPEDGANYALLIAELRKQLDSAGLSNVKISIAASAVTTIFDYAKVKDLMAAGLYGI
NLMTYDFFGTPWAETLGHHTNRKALEEGGWAVETIVDHLLAEGFSADRINIGYAGYTRNA
RQVEIESLSPLKGSYNPGSGPTTGSFESGTSEWYDVIYSYLDLENQKGRNGFNVYTDQVA
DADYLYSPESKLFLSLDTPRTVKAKGEYAAKLGLGGVFTWTIDQDNGVLVNAVREGLGYE
IESEVIDMEPFYFEGINVEKDEEQSDSDDAQKVNHAPKAAIELMVVGGSTVQLSGAGSSD
EDNDELSFSWGVPSQIDVADKTAEIIEVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVL
TAVPALSQVQPEPEEEEEIIVPVPDEEEDTTPAEDDTPADDKTSPYAQWDASTVYGANWG
SFEIVSWKGHNYQVKWWSMGNQPDLNCGVGGAWTDLGAY
![[54-465] 4.5e-72 PF00704](/dogan/img/H.gif "[54-465] 4.5e-72 PF00704"){kind=small}
![[640-699] 1.1e-08 SSF51055](/dogan/img/B.gif "[640-699] 1.1e-08 SSF51055"){kind=small}
![[646-696] 0.0014 SM00495](/dogan/img/R.gif "[646-696] 0.0014 SM00495"){kind=small}
![[26-484] 6.1e-69 G3DSA:3.20.20.80](/dogan/img/X2.gif "[26-484] 6.1e-69 G3DSA:3.20.20.80"){kind=small}