CDS Information : STMDT12_C00260
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| [O] Posttranslational modification, protein turnover, chaperones |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Salmonella enterica serovar Typhimurium T000240 |
| Replicon |
Chromosome |
| Start / Stop / Direction |
29,994 / 30,512 / + |
| Location |
29994..30512 |
| Type |
CDS |
| Length |
519 bp (172 aa) |
Annotation
| Product |
fimbrial subunit |
| Gene name |
|
| Functional category |
Cellular processes and signaling
- [N] Cell motility |
| EC number |
|
| Note |
COG3539 P pilus assembly protein, pilin FimA |
| KEGG pathway |
|
| Sequence feature |
|
| References |
Family/Domain:CDD-144130 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
 ![[1-20] 0.973 Signal](/dogan/img/R.gif "[1-20] 0.973 Signal")
| Eukaryota |
| Bacteria, Gram-negative |
|
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
172 amino acids |
| molecular mass |
17,704.54 Da |
| pI |
4.09 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
14
(24aa) | 5.8
(10aa) | 8.7
(15aa) | 5.2
(9aa) | 2.9
(5aa) | 0.6
(1aa) | 2.9
(5aa) | 1.7
(3aa) | 11.6
(20aa) | 10.5
(18aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
6.4
(11aa) | 1.2
(2aa) | 4.7
(8aa) | 5.2
(9aa) | 4.1
(7aa) | 0.6
(1aa) | 1.2
(2aa) | 3.5
(6aa) | 7
(12aa) | 2.3
(4aa) |
|
Sequence
>STMDT12_C00260 fimbrial subunit
ATGCGTAACGATATCCTGTACGGCATCGGGATGCTGCTGGCGGCATCCGGCGTCCAGGCG
CACGATGGCCGGGTCTATGTTTCCGGAACCATCACGGACAATACGTGTTCGCTCTCTCCT
GGCTCGGAAAATATTAACGTGGCGATGGGCGCGGTTTCTCAACGGCAGTTTTATCGCGCA
GGCGACGGTTCCGCATGGCAACCTTTTGCTATCGATTTACAAAACTGCGGCAGCACTGCC
AGCGGCGTAACGGTCAGTTTTAGCGGTGCGGCGGACAGCCGTAATACGGATTTATTGGCG
CTTACCGCAGGGGAAAGCGACGCTTCAGGCATTGGGATTGCGCTTTATGATCAAAATAAA
ACTTTAATCCCACTGGGGCAAGAGAGTGATGTGGTGACGCTCAGTCCGGGTCAGGCGTCG
GCGCATCTGCAATTTTACGCGCGTTATCTTGCCGATGGCGGCGCGGTAACGCCCGGGGAC
GCCAATGCCTCCGCAACCTTCATTCTTGCCTATGAATAA
>STMDT12_C00260 fimbrial subunit
MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRA
GDGSAWQPFAIDLQNCGSTASGVTVSFSGAADSRNTDLLALTAGESDASGIGIALYDQNK
TLIPLGQESDVVTLSPGQASAHLQFYARYLADGGAVTPGDANASATFILAYE
![[23-172] 1.2e-37 G3DSA:2.60.40.1090](/dogan/img/X2.gif "[23-172] 1.2e-37 G3DSA:2.60.40.1090"){kind=small}
![[23-172] 9.8e-34 PF00419](/dogan/img/H.gif "[23-172] 9.8e-34 PF00419"){kind=small}
![[31-172] 1.4e-37 SSF49401](/dogan/img/B.gif "[31-172] 1.4e-37 SSF49401"){kind=small}