DOGAN: CDS Information : STMDT12

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Salmonella enterica serovar Typhimurium T000240 Chromosome

Overview
Genome

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
Chromosome

Organism	Salmonella enterica serovar Typhimurium T000240
Replicon	Chromosome
Start / Stop / Direction	30,574 / 31,209 / +
Location	30574..31209
Type	CDS
Length	636 bp (211 aa)

Product	fimbrial chaparone
Gene name
Functional category	Cellular processes and signaling - [N] Cell motility
EC number
Note	COG3121 P pilus assembly protein, chaperone PapD
KEGG pathway
Sequence feature
References	Family/Domain:CDD-32935

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=1e-120	B4TID1_SALHS	Fimbrial chaparone	Alignment
2	E=1e-120	B5P834_SALET	Fimbrial chaparone	Alignment
3	E=1e-120	Q8ZS04_SALTY	Fimbrial chaparone	Alignment
4	E=1e-120	D0ZIT3_SALT1	Fimbrial chaparone	Alignment
5	E=1e-120	C9X5G1_SALTD	Fimbrial chaperone	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:26.0

IPR001829 Pili assembly chaperone, bacterial (Domain)
	PR00969 CHAPERONPILI
IPR001829 Bacterial pili assembly chaperone (Family)
	PF00345 Pili_assembly_N
	PR00969 CHAPERONPILI
	PS00635 PILI_CHAPERONE
	PF02753 Pili_assembly_C
	G3DSA:2.60.40.1070 no description
IPR008962 PapD-like (Domain)
	SSF49354 PapD-like
	G3DSA:2.60.40.360 no description
IPR016147 Pili assembly chaperone, N-terminal, bacterial (Domain)
	PS00635 PILI_CHAPERONE
	PF00345 Pili_assembly_N
IPR016148 Pili assembly chaperone, C-terminal, bacterial (Domain)
	G3DSA:2.60.40.1070 no description
	SSF49584 Periplasmic chaperone C-domain
	PF02753 Pili_assembly_C
IPR018046 Pili assembly chaperone, conserved site (Conserved_site)
	PS00635 PILI_CHAPERONE

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

211 amino acids

molecular mass

23,470.95 Da

pI

10.29

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
10 (21aa)	7.6 (16aa)	8.5 (18aa)	4.7 (10aa)	3.3 (7aa)	2.4 (5aa)	8.5 (18aa)	2.8 (6aa)	6.6 (14aa)	5.7 (12aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
7.6 (16aa)	0.9 (2aa)	4.7 (10aa)	3.8 (8aa)	3.3 (7aa)	1.4 (3aa)	2.4 (5aa)	9 (19aa)	3.8 (8aa)	2.8 (6aa)

>STMDT12_C00270 fimbrial chaparone
GTGGTAATTGGCGGTACTCGCTTTATCTATCATGCGGGCGCCCCGGCATTAAGCGTACCG
GTAAGTAACCGTTCAGAAGCGTCCTGGTTAATTGATACGCATATTTTACCTGGTGGCCGC
TGGCCAGGAACCAAAAACGAAGGGAATATCATGCCCTTCGTGGTCACGCCGCCATTATTT
ATGCTTTCAGCGCGCCAGGAAAACTCAATGCGGGTGGTTTATACCGGCGCACCGCTACCC
GCCGACAGGGAAAGTCTGTTTACCTTGAGTATCGCCGCTATTCCCTCCGGTAAACCGGAA
GCGAACCGTGTACAAATGGCGTTTCGTTCGGCTTTAAAATTGCTCTATCGCCCTGATGGA
CTCGCCGGCAATCCGCAGCAGGCCTACCGGCATCTGATCTGGTCGCTTACCCCCGATGGC
GCGACGGTACGCAATCCTACACCCTATTACGTTACGCTCTTTTTATTACGTGCTAACGAG
CGCGCCCAGGACAACGCCGGGGTCGTGGCTCCCTTTGCAACGCGTCAAACGGACTGGTGC
CGGCACACGGTTCGCTGCACTGTGCGCTGGCAAAGTATTAATGACTATGGGCGGGTAATG
CCAGCGCAAACCGTGGATCTGACGCGTATTCATTAA


>STMDT12_C00270 fimbrial chaparone
MVIGGTRFIYHAGAPALSVPVSNRSEASWLIDTHILPGGRWPGTKNEGNIMPFVVTPPLF
MLSARQENSMRVVYTGAPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPDG
LAGNPQQAYRHLIWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWC
RHTVRCTVRWQSINDYGRVMPAQTVDLTRIH

CDS Information : STMDT12_C00270

Genomic map

Salmonella enterica serovar Typhimurium T000240 Chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence