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CDS Information : STMDT12_C02440

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close this sectionGenomic map

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Salmonella enterica serovar Typhimurium T000240 Chromosome

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Overview 
Genome

close this sectionLocation

Organism Salmonella enterica serovar Typhimurium T000240
Replicon Chromosome
Start / Stop / Direction 284,186 / 282,468 / -
Location complement(282468..284186)
Type CDS
Length 1,719 bp (572 aa)

close this sectionAnnotation

Product prolyl-tRNA synthetase
Gene name
Functional category Information storage and processing
- [J] Translation, ribosomal structure and biogenesis
EC number 6.1.1.15
Note COG0442 Prolyl-tRNA synthetase
KEGG pathway
Sequence feature
References Family/Domain:CDD-137117

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0D0ZKZ7_SALT1Prolyl-tRNA synthetaseAlignment
2E=0B5Q1D9_SALVIProlyl-tRNA synthetaseAlignment
3E=0B5Q126_SALHAProlyl-tRNA synthetaseAlignment
4E=0B5P9E4_SALETProlyl-tRNA synthetaseAlignment
5E=0B5NMS7_SALETProlyl-tRNA synthetaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR002314 Aminoacyl-tRNA synthetase, class II (G, H, P and S) (Domain)
 [51-215]  9.4e-42 PF00587
PF00587   tRNA-synt_2b
IPR002316 Prolyl-tRNA synthetase, class IIa (Domain)
 [68-86]  3.2e-19 PR01046 [104-115]  3.2e-19 PR01046 [134-142]  3.2e-19 PR01046 [144-155]  3.2e-19 PR01046
PR01046   TRNASYNTHPRO
IPR002316 Prolyl-tRNA synthetase, class IIa (Family)
 [68-86]  3.2e-19 PR01046 [104-115]  3.2e-19 PR01046 [134-142]  3.2e-19 PR01046 [144-155]  3.2e-19 PR01046
PR01046   TRNASYNTHPRO
IPR004154 Anticodon-binding (Domain)
 [475-568]  3.9e-21 PF03129
PF03129   HGTP_anticodon
 [461-572]  2.2e-34 SSF52954
SSF52954   Anticodon-binding domain of Class II aaRS
 [469-571]  1.2e-28 G3DSA:3.40.50.800
G3DSA:3.40.50.800   no description
IPR004500 Prolyl-tRNA synthetase, bacterial (Family)
 [1-569]  TIGR00409
TIGR00409   proS_fam_II: prolyl-tRNA synthetase
IPR006195 Aminoacyl-tRNA synthetase, class II (Domain)
 [38-468]  20.776 PS50862
PS50862   AA_TRNA_LIGASE_II
IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain (Domain)
 [257-376]  1.1e-26 PF04073
PF04073   YbaK
 [218-390]  5.4e-36 SSF55826
SSF55826   YbaK/ProRS associated domain
IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 (Family)
 [1-571]  43.134 MF_01569
MF_01569   SYP_MF_01569
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 572 amino acids
molecular mass 63,539.57 Da
pI 4.96
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.1
(52aa)
8.4
(48aa)
8.6
(49aa)
6.8
(39aa)
3.7
(21aa)
0.9
(5aa)
4.9
(28aa)
3.1
(18aa)
7
(40aa)
5.4
(31aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.9
(28aa)
0.2
(1aa)
3.5
(20aa)
4.2
(24aa)
2.8
(16aa)
4.7
(27aa)
1.7
(10aa)
6.1
(35aa)
6.3
(36aa)
7.7
(44aa)

open this sectionSequence