CDS Information : STMDT12_C02440
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| [O] Posttranslational modification, protein turnover, chaperones |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Salmonella enterica serovar Typhimurium T000240 |
| Replicon |
Chromosome |
| Start / Stop / Direction |
284,186 / 282,468 / - |
| Location |
complement(282468..284186) |
| Type |
CDS |
| Length |
1,719 bp (572 aa) |
Annotation
| Product |
prolyl-tRNA synthetase |
| Gene name |
|
| Functional category |
Information storage and processing
- [J] Translation, ribosomal structure and biogenesis |
| EC number |
6.1.1.15 |
| Note |
COG0442 Prolyl-tRNA synthetase |
| KEGG pathway |
|
| Sequence feature |
|
| References |
Family/Domain:CDD-137117 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
572 amino acids |
| molecular mass |
63,539.57 Da |
| pI |
4.96 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
9.1
(52aa) | 8.4
(48aa) | 8.6
(49aa) | 6.8
(39aa) | 3.7
(21aa) | 0.9
(5aa) | 4.9
(28aa) | 3.1
(18aa) | 7
(40aa) | 5.4
(31aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
4.9
(28aa) | 0.2
(1aa) | 3.5
(20aa) | 4.2
(24aa) | 2.8
(16aa) | 4.7
(27aa) | 1.7
(10aa) | 6.1
(35aa) | 6.3
(36aa) | 7.7
(44aa) |
|
Sequence
>STMDT12_C02440 prolyl-tRNA synthetase
ATGCGTACTAGCCAATACCTGCTCTCCACTCTGAAGGAGACACCTGCCGACGCCGAGGTT
ATCAGCCACCAGCTGATGCTGCGCGCCGGGATGATCCGCAAGCTCGCCTCCGGGTTATAT
ACCTGGCTGCCGACCGGCCTGCGCGTCCTGAAAAAAGTCGAAAACATCGTGCGTGAAGAG
ATGAACAACGCCGGTGCTATCGAGGTGTCGATGCCAGTCGTTCAGCCAGCCGACCTGTGG
CAAGAGAGTGGTCGTTGGGAACAGTACGGTCCGGAACTGCTGCGTTTTGTCGACCGTGGC
GAGCGTCCGTTCGTACTCGGCCCGACCCACGAAGAAGTTATCACCGACCTGGTGCGTAAT
GAACTCAGCTCTTATAAGCAGTTGCCGCTGAACTTCTTCCAAATCCAGACCAAATTCCGT
GATGAAGTGCGTCCGCGCTTTGGCGTGATGCGTTCGCGCGAATTCCTGATGAAAGATGCT
TACTCTTTCCACACCTCTCAGGAGTCGTTGCAGGAAACCTATGACGCCATGTACGCCGCG
TATAGCCGTATCTTCAGCCGTATGGGGCTGGATTTCCGCGCGGTACAGGCCGATACCGGT
TCTATCGGCGGCAACGCCTCGCATGAATTCCAGGTGCTGGCGCAAAGCGGCGAAGACGAT
ATCGTTTTCTCTGATGTTTCTGATTACGCGGCTAACATTGAACTGGCAGAAGCTATCGCG
CCGCAAACGCCGCGCGCAGCGGCGACGCAGGAAATGACTCTGGTCGATACGCCAAATGCC
AAAACCATCGCGGAGCTGGTGGAACAATTCAACCTGCCAATTGAAAAAACGGTAAAAACG
CTGCTGGTGAAAGCGGTGAAAGACAGCAAGTCTCCGCTGGTGGCTCTGCTGGTTCGCGGC
GATCATGAACTGAATGAAGTTAAAGCGGAAAAACTGCCGCACGTTGCCAGCCCGCTGACC
TTCGCTACCGAAGAAGAGATTCGCGCCGTAATTAATGCCGGCCCTGGCTCCCTCGGCCCG
GTCAATATGCCGATTCCGGTCATCATCGATCGTACCGTTGCCGCCATGAGCGATTTTGCC
GCTGGCGCCAACATCGACGGTAAACACTACTTTGGTATTAACTGGGATCGCGATGTGGCG
ACGCCTGTTGTTGCCGACATCCGTAACGTAGTCGCCGGCGATCCGAGTCCGGATGGTCAG
GGAACGTTGCTTATCAAACGCGGTATCGAAGTGGGTCACATCTTCCAGTTAGGTACCAAG
TACTCAGAAGCGCTGAAAGCCTCCGTTCAGGGTGAAGATGGCCGTAACCAGATCCTGACA
ATGGGCTGCTACGGTATCGGCGTAACACGTGTCGTTGCCGCTGCTATCGAGCAGAACTTT
GACGAGCGCGGCATTGTATGGCCTGACGCCATTGCGCCTTTCCAGGTCGCTATTCTGCCG
ATGAATATGCACAAATCCTTCCGTGTGCAGGAGCTGGCGGAAAAGCTGTACAGCGAATTG
CGCGCGCAGGGCATTGAAGTGCTGATGGACGACCGTAAAGAGCGCCCGGGCGTGATGTTT
GCCGATATGGAGCTGATTGGTATTCCACATACTATCGTGATTGGCGATCGCAACCTGGAT
AACGACGATATTGAGTATAAATACCGTCGTAGCGGTGAAAAATCGCTGATTAAAACCGGC
GATATCGTTGATTATCTGGTCAAGGCGATTAAGGGCTAA
>STMDT12_C02440 prolyl-tRNA synthetase
MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE
MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN
ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA
YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSDVSDYAANIELAEAIA
PQTPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEKTVKTLLVKAVKDSKSPLVALLVRG
DHELNEVKAEKLPHVASPLTFATEEEIRAVINAGPGSLGPVNMPIPVIIDRTVAAMSDFA
AGANIDGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTK
YSEALKASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILP
MNMHKSFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLD
NDDIEYKYRRSGEKSLIKTGDIVDYLVKAIKG
![[51-215] 9.4e-42 PF00587](/dogan/img/H.gif "[51-215] 9.4e-42 PF00587"){kind=small}
![[68-86] 3.2e-19 PR01046](/dogan/img/F.gif "[68-86] 3.2e-19 PR01046"){kind=small}
![[461-572] 2.2e-34 SSF52954](/dogan/img/B.gif "[461-572] 2.2e-34 SSF52954"){kind=small}
![[469-571] 1.2e-28 G3DSA:3.40.50.800](/dogan/img/X2.gif "[469-571] 1.2e-28 G3DSA:3.40.50.800"){kind=small}
![[1-569] TIGR00409](/dogan/img/T.gif "[1-569] TIGR00409"){kind=small}
![[38-468] 20.776 PS50862](/dogan/img/M.gif "[38-468] 20.776 PS50862"){kind=small}
![[1-571] 43.134 MF_01569](/dogan/img/G.gif "[1-571] 43.134 MF_01569"){kind=small}