CDS Information : STMDT12_C05970
open/close allGenomic map
| Information storage and processing |
| [J] Translation, ribosomal structure and biogenesis |
| [A] RNA processing and modification |
| [K] Transcription |
| [L] Replication, recombination and repair |
| Cellular processes and signaling |
| [D] Cell cycle control, cell division, chromosome partitioning |
| [V] Defense mechanisms |
| [T] Signal transduction mechanisms |
| [M] Cell wall/membrane/envelope biogenesis |
| [N] Cell motility |
| [U] Intracellular trafficking, secretion, and vesicular transport |
| [O] Posttranslational modification, protein turnover, chaperones |
| Metabolism |
| [C] Energy production and conversion |
| [G] Carbohydrate transport and metabolism |
| [E] Amino acid transport and metabolism |
| [F] Nucleotide transport and metabolism |
| [H] Coenzyme transport and metabolism |
| [I] Lipid transport and metabolism |
| [P] Inorganic ion transport and metabolism |
| [Q] Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterized |
| [R] General function prediction only |
| [S] Function unknown |
| Unannotated |
Location
| Organism |
Salmonella enterica serovar Typhimurium T000240 |
| Replicon |
Chromosome |
| Start / Stop / Direction |
635,166 / 634,099 / - |
| Location |
complement(634099..635166) |
| Type |
CDS |
| Length |
1,068 bp (355 aa) |
Annotation
| Product |
phosphoribosylaminoimidazole carboxylase ATPase subunit |
| Gene name |
|
| Functional category |
Metabolism
- [F] Nucleotide transport and metabolism |
| EC number |
4.1.1.21 |
| Note |
COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) |
| KEGG pathway |
|
| Sequence feature |
|
| References |
Family/Domain:CDD-135713 |
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:26.0
|
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
355 amino acids |
| molecular mass |
39,141.80 Da |
| pI |
6.13 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
9
(32aa) | 6.5
(23aa) | 12.4
(44aa) | 5.9
(21aa) | 2.5
(9aa) | 2.5
(9aa) | 5.9
(21aa) | 2
(7aa) | 8.5
(30aa) | 5.6
(20aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
5.1
(18aa) | 1.1
(4aa) | 3.4
(12aa) | 5.4
(19aa) | 2
(7aa) | 2.5
(9aa) | 3.1
(11aa) | 5.9
(21aa) | 4.5
(16aa) | 6.2
(22aa) |
|
Sequence
>STMDT12_C05970 phosphoribosylaminoimidazole carboxylase ATPase subunit
ATGAAGCAAGTTTGCGTTCTCGGCAACGGACAACTGGGCCGAATGCTGCGCCAGGCGGGC
GAACCGCTGGGTATCGCCGTCTGGCCGGTTGGTCTGGATGCAGAGCCTACCGCCGTGCCG
GTACAGCAGAGCGTCATTACCGCAGAGATTGAGCGCTGGCCGGAAACCGCGCTTACCCGC
GAGCTGGCGCGCCACCCGGCCTTCGTCAATCGCGATGTATTTCCGATCATCGCCGACCGT
CTGACACAAAAACAGCTTTTCGATAAACTGGGACTCGCGACCGCGCCGTGGCAGCTGCTG
ACCAGCACCGACGAGTGGTCCGGCATCTTTGACCGCCTGGGCGAACTGGCGATTATTAAG
CGTCGCGTTGGCGGCTACGACGGTCGCGGGCAGTGGCGTCTACGCGCGGACGAAACCGGG
CAACTGCCGGATGACTGCTATGGCGAATGTATTGTTGAGCGCGGTATCCATTTTTCCGGC
GAAGTGTCGTTAGTCGGCGCGCGCGCTCATGACGGCAGTACCGTGTTTTACCCGCTAACG
CACAATTTGCATCAGGACGGCATCTTGCGGACCAGCGTCGCGTTCCCACAGGCGAACGCC
GAACAGCAGGAGCAGGCGGAATCGATGCTGTCAGCAATTATGCAGGCGCTGAACTACGTC
GGCGTAATGGCGATGGAATGTTTTATCACGCCGGAAGGCCTGTTAATCAATGAACTGGCG
CCGCGCGTGCATAACAGCGGACACTGGACGCAAAATGGCGCCAGCATCAGTCAGTTTGAA
TTGCATTTGCGCGCGATTACCGGCCTGCCGTTGCCCGCGCCGGTGATTAACGCCCCGTCG
GTGATGATCAACCTGATCGGCAGCGAGCTGAATTACGACTGGCTGAAGCTGCCGCTGGTA
CATCTGCACTGGTATGATAAAGCGGTACGTCCGGGGCGAAAAGTCGGCCATCTGAATCTG
ACCGACAGCGATACGTCACGTCTTAGCGCCACCCTGGAAGCGCTCTCTCCGCTCCTGCCA
GGCGAATACGCCAGCGGCATTATCTGGGCGCAAAGTAAGCTTAAATAA
>STMDT12_C05970 phosphoribosylaminoimidazole carboxylase ATPase subunit
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPTAVPVQQSVITAEIERWPETALTR
ELARHPAFVNRDVFPIIADRLTQKQLFDKLGLATAPWQLLTSTDEWSGIFDRLGELAIIK
RRVGGYDGRGQWRLRADETGQLPDDCYGECIVERGIHFSGEVSLVGARAHDGSTVFYPLT
HNLHQDGILRTSVAFPQANAEQQEQAESMLSAIMQALNYVGVMAMECFITPEGLLINELA
PRVHNSGHWTQNGASISQFELHLRAITGLPLPAPVINAPSVMINLIGSELNYDWLKLPLV
HLHWYDKAVRPGRKVGHLNLTDSDTSRLSATLEALSPLLPGEYASGIIWAQSKLK
![[88-253] 2.2e-53 PF02222](/dogan/img/H.gif "[88-253] 2.2e-53 PF02222"){kind=small}
![[3-331] 2.9e-178 TIGR01161](/dogan/img/T.gif "[3-331] 2.9e-178 TIGR01161"){kind=small}
![[277-355] 8.4e-21 SSF51246](/dogan/img/B.gif "[277-355] 8.4e-21 SSF51246"){kind=small}
![[84-267] 30.23 PS50975](/dogan/img/M.gif "[84-267] 30.23 PS50975"){kind=small}
![[133-355] 1.2e-72 G3DSA:3.30.470.20](/dogan/img/X2.gif "[133-355] 1.2e-72 G3DSA:3.30.470.20"){kind=small}