DOGAN: CDS Information : STMDT12

Display

Salmonella enterica serovar Typhimurium T000240 Chromosome

Overview
Genome

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
Chromosome

Organism	Salmonella enterica serovar Typhimurium T000240
Replicon	Chromosome
Start / Stop / Direction	1,900,017 / 1,898,947 / -
Location	complement(1898947..1900017)
Type	CDS
Length	1,071 bp (356 aa)

Product	alanine racemase
Gene name	dadX
Functional category	Cellular processes and signaling - [M] Cell wall/membrane/envelope biogenesis
EC number	5.1.1.1
Note	COG0787 Alanine racemase
KEGG pathway
Sequence feature
References	Family/Domain:CDD-134911

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=0	Q5PN11_SALPA	Alanine racemase	Alignment
2	E=0	D0ZJ79_SALT1	Alanine racemase	Alignment
3	E=0	B5BI51_SALPK	Alanine racemase	Alignment
4	E=0	C9X6I1_SALTD	Alanine racemase	Alignment
5	E=0	B5PP83_SALHA	Alanine racemase	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:26.0

IPR000821 Alanine racemase region (Domain)
	PR00992 ALARACEMASE
	TIGR00492 alr: alanine racemase
	PS00395 ALANINE_RACEMASE
	MF_01201 ALR_MF_01201
IPR001608 Alanine racemase, N-terminal (Domain)
	PF01168 Ala_racemase_N
IPR009006 Alanine racemase/group IV decarboxylase, C-terminal (Domain)
	SSF50621 Alanine racemase C-terminal domain-like
	G3DSA:2.40.37.10 no description
IPR011079 Alanine racemase, C-terminal (Domain)
	PF00842 Ala_racemase_C
IPR020622 Alanine racemase, pyridoxal-phosphate attachment site (Binding_site)
	PS00395 ALANINE_RACEMASE

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

356 amino acids

molecular mass

38,804.42 Da

pI

6.95

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
11.5 (41aa)	7.6 (27aa)	9.3 (33aa)	5.3 (19aa)	1.7 (6aa)	2.5 (9aa)	5.1 (18aa)	3.4 (12aa)	9.6 (34aa)	4.8 (17aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
6.7 (24aa)	1.1 (4aa)	2.8 (10aa)	5.1 (18aa)	3.4 (12aa)	2.2 (8aa)	2.2 (8aa)	6.5 (23aa)	4.2 (15aa)	5.1 (18aa)

>STMDT12_C18230 alanine racemase
ATGACCCGCCCTATACAGGCCAGCCTTGATTTACAGGTAATGAAACAAAATTTGGCTATT
GTGCGCCGGGCGGCCCCAGAGGCGCGCGTCTGGTCGGTAGTGAAAGCCAACGCCTACGGC
CACGGTATTGAACGCGTCTGGAGCGCGCTGGGCGCCACAGATGGTTTCGCTATGCTCAAC
CTTGAAGAGGCGATTACCCTGCGTGAGCGCGGGTGGAAAGGGCCGATATTGATGCTGGAG
GGGTTTTTCCATGCGCAAGACCTGGAGGCGTATGACACTTATCGGCTGACCACCTGCATC
CACAGTAACTGGCAGTTGAAAGCGCTGCAAAATGCGCGGCTTAACGCGCCGCTGGATATC
TATGTCAAAGTCAACAGCGGCATGAACCGACTCGGTTTTCAGCCTGAGCGGGCGCAGACC
GTCTGGCAGCAATTGCGGGCAATGCGCAATGTCGGTGAAATGACCCTGATGTCACATTTT
GCTCAGGCCGATCATCCGGAAGGTATCGGGGAGGCGATGAGGCGTATTGCGCTGGCGACG
GAAGGTCTTCAGTGTGCATACTCGTTATCAAATTCGGCAGCGACGCTGTGGCATCCCCAG
GCGCATTATGACTGGGTCAGGCCGGGCATTATTTTGTACGGCGCGTCGCCGTCAGGACAG
TGGCGGGATATTGCCGATACCGGACTAAAACCTGTGATGACGCTGAGTAGCGAAATTATT
GGCGTGCAGACGCTGAGCGCGGGTGAAAGGGTAGGCTATGGCGGAGGGTATTCTGTGACT
CAGGAACAACGCATTGGCATCGTCGCGGCGGGTTATGCCGATGGCTATCCACGCCATGCG
CCGACCGGGACGCCTGTGCTGGTGGACGGTATCCGTACCAGAACAGTAGGCACCGTTTCA
ATGGATATGCTGGCGGTGGATTTGACGCCGTGTCCGCAGGCGGGAATCGGCACGCCGGTT
GAATTATGGGGCAAAGAAATTAAGGTCGATGATGTCGCTTCTGCGGCAGGCACGCTGGGC
TATGAGCTACTGTGCGCCGTAGCGCCGCGTGTGCCGTTTGTGACAACGTAA


>STMDT12_C18230 alanine racemase
MTRPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSALGATDGFAMLN
LEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLDI
YVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALAT
EGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLSSEII
GVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHAPTGTPVLVDGIRTRTVGTVS
MDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLCAVAPRVPFVTT

CDS Information : STMDT12_C18230

Genomic map

Salmonella enterica serovar Typhimurium T000240 Chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence