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CDS Information : STMDT12_C19840

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Salmonella enterica serovar Typhimurium T000240 Chromosome

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Overview 
Genome

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Organism Salmonella enterica serovar Typhimurium T000240
Replicon Chromosome
Start / Stop / Direction 2,047,208 / 2,048,692 / +
Location 2047208..2048692
Type CDS
Length 1,485 bp (494 aa)

close this sectionAnnotation

Product cytoplasmic alpha-amylase
Gene name
Functional category Metabolism
- [G] Carbohydrate transport and metabolism
EC number 3.2.1.1
Note COG0366 Glycosidases
KEGG pathway
Sequence feature
References Family/Domain:CDD-137288

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0D0ZL90_SALT1Cytoplasmic alpha-amylaseAlignment
2E=0C9X7H8_SALTDCytoplasmic alpha-amylaseAlignment
3E=0B5N3J0_SALETCytoplasmic alpha-amylaseAlignment
4E=0AMY2_SALTYCytoplasmic alpha-amylase
1,4-alpha-D-glucan glucanohydrolase
Alignment
5E=0B5MR52_SALETCytoplasmic alpha-amylaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR006047 Glycosyl hydrolase, family 13, catalytic region (Domain)
 [24-368]  7.6e-27 PF00128
PF00128   Alpha-amylase
IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region (Domain)
 [4-402]  4.4e-58 SM00642
SM00642   no description
IPR013776 Alpha-amylase, thermostable (Family)
 [1-494]  PIRSF001021
PIRSF001021   Alpha-amylase, thermostable type
IPR013781 Glycoside hydrolase, catalytic core (Domain)
 [3-410]  2.5e-73 G3DSA:3.20.20.80
G3DSA:3.20.20.80   no description
IPR017853 Glycoside hydrolase, catalytic core (Domain)
 [2-430]  1.9e-91 SSF51445
SSF51445   (Trans)glycosidases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 494 amino acids
molecular mass 56,522.15 Da
pI 4.38
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.1
(35aa)
7.1
(35aa)
7.5
(37aa)
5.5
(27aa)
5.1
(25aa)
2.8
(14aa)
4
(20aa)
2
(10aa)
7.5
(37aa)
3
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.9
(24aa)
1.6
(8aa)
5.5
(27aa)
4
(20aa)
4.7
(23aa)
4.3
(21aa)
3
(15aa)
4.3
(21aa)
9.5
(47aa)
6.7
(33aa)

open this sectionSequence