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CDS Information : STMDT12_C37180

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close this sectionGenomic map

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Salmonella enterica serovar Typhimurium T000240 Chromosome

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Genome

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Organism Salmonella enterica serovar Typhimurium T000240
Replicon Chromosome
Start / Stop / Direction 3,870,685 / 3,869,363 / -
Location complement(3869363..3870685)
Type CDS
Length 1,323 bp (440 aa)

close this sectionAnnotation

Product xylose isomerase
Gene name
Functional category Metabolism
- [G] Carbohydrate transport and metabolism
EC number 5.3.1.5
Note COG2115 Xylose isomerase
KEGG pathway
Sequence feature
References Family/Domain:CDD-135413

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0D0ZKN5_SALT1Xylose isomeraseAlignment
2E=0C9X7U9_SALTDXylose isomeraseAlignment
3E=0B5Q781_SALVIXylose isomeraseAlignment
4E=0B5PC03_SALETXylose isomeraseAlignment
5E=0B5P1H6_SALETXylose isomeraseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR001998 Xylose isomerase (Family)
 [92-114]  3.4e-85 PR00688 [133-153]  3.4e-85 PR00688 [156-175]  3.4e-85 PR00688 [180-201]  3.4e-85 PR00688 [207-226]  3.4e-85 PR00688 [229-253]  3.4e-85 PR00688 [271-298]  3.4e-85 PR00688 [300-311]  3.4e-85 PR00688 [333-344]  3.4e-85 PR00688
PR00688   XYLOSISMRASE
 [11-437]  53.392 MF_00455
MF_00455   XYLA_MF_00455
 [35-437]  190.82 PS51415
PS51415   XYLOSE_ISOMERASE
IPR012307 Xylose isomerase-type TIM barrel (Domain)
 [143-298]  1.4e-16 PF01261
PF01261   AP_endonuc_2
IPR013022 Xylose isomerase-like, TIM barrel (Domain)
 [2-439]  1.1e-191 SSF51658
SSF51658   Xylose isomerase-like
 [2-440]  2.3e-189 G3DSA:3.20.20.150
G3DSA:3.20.20.150   no description
IPR013452 Xylose isomerase, bacterial type (Family)
 [4-437]  TIGR02630
TIGR02630   xylose_isom_A: xylose isomerase
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 440 amino acids
molecular mass 49,701.05 Da
pI 6.06
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.8
(43aa)
6.1
(27aa)
9.3
(41aa)
2.7
(12aa)
5.7
(25aa)
1.8
(8aa)
3.4
(15aa)
2.7
(12aa)
8.9
(39aa)
2.7
(12aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(20aa)
0.9
(4aa)
5
(22aa)
5.9
(26aa)
4.1
(18aa)
5.5
(24aa)
3.9
(17aa)
4.3
(19aa)
5.5
(24aa)
7.3
(32aa)

open this sectionSequence