DOGAN: CDS Information : STMDT12

Display

Salmonella enterica serovar Typhimurium T000240 Chromosome

Overview
Genome

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
Chromosome

Organism	Salmonella enterica serovar Typhimurium T000240
Replicon	Chromosome
Start / Stop / Direction	3,870,685 / 3,869,363 / -
Location	complement(3869363..3870685)
Type	CDS
Length	1,323 bp (440 aa)

Product	xylose isomerase
Gene name
Functional category	Metabolism - [G] Carbohydrate transport and metabolism
EC number	5.3.1.5
Note	COG2115 Xylose isomerase
KEGG pathway
Sequence feature
References	Family/Domain:CDD-135413

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=0	D0ZKN5_SALT1	Xylose isomerase	Alignment
2	E=0	C9X7U9_SALTD	Xylose isomerase	Alignment
3	E=0	B5Q781_SALVI	Xylose isomerase	Alignment
4	E=0	B5PC03_SALET	Xylose isomerase	Alignment
5	E=0	B5P1H6_SALET	Xylose isomerase	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:26.0

IPR001998 Xylose isomerase (Family)
	PR00688 XYLOSISMRASE
	MF_00455 XYLA_MF_00455
	PS51415 XYLOSE_ISOMERASE
IPR012307 Xylose isomerase-type TIM barrel (Domain)
	PF01261 AP_endonuc_2
IPR013022 Xylose isomerase-like, TIM barrel (Domain)
	SSF51658 Xylose isomerase-like
	G3DSA:3.20.20.150 no description
IPR013452 Xylose isomerase, bacterial type (Family)
	TIGR02630 xylose_isom_A: xylose isomerase

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

440 amino acids

molecular mass

49,701.05 Da

pI

6.06

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
9.8 (43aa)	6.1 (27aa)	9.3 (41aa)	2.7 (12aa)	5.7 (25aa)	1.8 (8aa)	3.4 (15aa)	2.7 (12aa)	8.9 (39aa)	2.7 (12aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
4.5 (20aa)	0.9 (4aa)	5 (22aa)	5.9 (26aa)	4.1 (18aa)	5.5 (24aa)	3.9 (17aa)	4.3 (19aa)	5.5 (24aa)	7.3 (32aa)

>STMDT12_C37180 xylose isomerase
ATGCAGGCTTATTTTGACCAACTCGATCGTGTTCGCTATGAAGGCCCTCAATCGACTAAC
CCGCTGGCATTTCGTCATTACAATCCCGACGAGCTGGTTTTAGGTAAACGTATGGAAGAT
CACCTGCGTTTCGCGGCCTGTTACTGGCATACCTTCTGCTGGAACGGCGCGGATATGTTT
GGTGTAGGCGCGTTTAATCGTCCGTGGCAGCAACCGGGCGAAGCGCTGGAGCTGGCGAAA
CGCAAAGCGGATGTGGCGTTTGAATTTTTCCACAAACTGAATGTGCCTTTTTACTGCTTC
CATGACGTGGATGTGTCGCCGGAAGGCGCGTCGTTGAAAGAATATAAAAACAACTTCGCG
CAGATGGTGGATGTGCTGGCGGCGAAACAGGAGCAGAGCGGCGTAAAACTGCTGTGGGGA
ACGGCGAACTGCTTTACCAACCCGCGCTATGGCGCAGGCGCCGCCACTAACCCGGATCCG
GAAGTCTTTAGCTGGGCAGCGACGCAAGTGGTTACGGCAATGAACGCCACGCATAAACTG
GGCGGCGAAAATTACGTCCTGTGGGGCGGGCGCGAAGGTTATGAAACGTTGCTGAATACC
GATCTGCGCCAGGAACGCGAACAGATTGGCCGCTTTATGCAAATGGTGGTCGAGCACAAA
CATAAAATGGGTTTCCAGGGCACACTGCTGATTGAACCGAAACCGCAGGAACCGACAAAA
CATCAGTATGATTATGACGTTGCAACGGTCTATGGCTTCCTCAAACAGTTCGGCCTGGAA
AAAGAGATCAAAGTGAACATTGAGGCGAACCACGCGACGCTGGCGGGCCATTCGTTCCAC
CATGAAATCGCAACCGCTATCGCGCTGGGTATTTTTGGCTCCGTTGACGCCAACCGCGGC
GATGCGCAACTGGGCTGGGATACCGATCAGTTCCCGATTAGCGTTGAAGAGAACGCGCTG
GTGATGTACGAAATCCTGAAAGCGGGCGGATTCACGACGGGCGGTCTCAACTTCGACGCC
AAAGTTCGTCGCCAGAGCACCGATAAATACGATCTGTTCTACGGTCATATCGGCGCGATG
GATACGATGGCGTTGTCGCTGAAAATCGCCGCGCGTATGGTTGAAGACGGCGAGCTGGAT
AAACGCGTGGCGAAGCGCTATGCCGGCTGGAATGGCGAGCTGGGTCAGCAGATTCTGAAA
GGACAACTCTCCTTAGGCGAACTGGCGCAGTATGCGGAGCAGCATAATCTGGCGCCAGTA
CATCAAAGCGGTCATCAGGAGCTGTTAGAAAATCTGGTTAACCGTTATCTGTTTGATAAA
TAA


>STMDT12_C37180 xylose isomerase
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMF
GVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFA
QMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMNATHKL
GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRG
DAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
DTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPV
HQSGHQELLENLVNRYLFDK

CDS Information : STMDT12_C37180

Genomic map

Salmonella enterica serovar Typhimurium T000240 Chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence