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CDS Information : STMDT12_C37210

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Salmonella enterica serovar Typhimurium T000240 Chromosome

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Overview 
Genome

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Organism Salmonella enterica serovar Typhimurium T000240
Replicon Chromosome
Start / Stop / Direction 3,873,427 / 3,875,454 / +
Location 3873427..3875454
Type CDS
Length 2,028 bp (675 aa)

close this sectionAnnotation

Product periplasmic alpha-amylase precursor
Gene name malS
Functional category Metabolism
- [G] Carbohydrate transport and metabolism
EC number
Note COG0366 Glycosidases
KEGG pathway
Sequence feature
References Family/Domain:CDD-137344

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q8ZL87_SALTYAlpha-amylaseAlignment
2E=0D0ZKP1_SALT1Periplasmic alpha-amylaseAlignment
3E=0C9X7V2_SALTDAlpha-amylaseAlignment
4E=0B5MX66_SALETAlpha-amylaseAlignment
5E=0B5C469_SALETAlpha-amylaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR006047 Glycosyl hydrolase, family 13, catalytic region (Domain)
 [225-594]  2.3e-39 PF00128
PF00128   Alpha-amylase
IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region (Domain)
 [192-636]  2.1e-76 SM00642
SM00642   no description
IPR013781 Glycoside hydrolase, catalytic core (Domain)
 [180-645]  1.1e-70 G3DSA:3.20.20.80
G3DSA:3.20.20.80   no description
IPR014635 Alpha-amylase, MalS type (Family)
 [1-675]  PIRSF036917
PIRSF036917   Alpha-amylase, MalS type
IPR017853 Glycoside hydrolase, catalytic core (Domain)
 [180-642]  2.8e-73 SSF51445
SSF51445   (Trans)glycosidases
SignalP
 [1-17]  0.612 Signal
Bacteria, Gram-positive   
 [1-17]  0.987 Signal
Bacteria, Gram-negative   
 [1-17]  0.812 Signal
Eukaryota   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 675 amino acids
molecular mass 75,741.59 Da
pI 6.08
aa composition
AlaValLeuIlePheTrpProMetGlySer
9
(61aa)
4
(27aa)
8.6
(58aa)
3.6
(24aa)
4.4
(30aa)
3.7
(25aa)
5
(34aa)
2.1
(14aa)
8.9
(60aa)
6.1
(41aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.9
(53aa)
0.6
(4aa)
2.8
(19aa)
6.2
(42aa)
4.1
(28aa)
3.9
(26aa)
3
(20aa)
5
(34aa)
7.7
(52aa)
3.4
(23aa)

open this sectionSequence