| ORF ID | start | stop | dir | Annotation |
|---|
| SH0001 | 508 | 1863 | + | chromosomal replication initiator protein |
| SH0002 | 2164 | 3297 | + | DNA polymerase III beta chain, sliding clamp subunit |
| SH0003 | 3676 | 3909 | + | similar to unknown protein |
| SH0004 | 3906 | 5021 | + | DNA repair and genetic recombination protein |
| SH0005 | 5031 | 6965 | + | DNA gyrase (topoisomerase II) subunit B |
| SH0006 | 7063 | 9762 | + | DNA gyrase (topoisomerase II) subunit A |
| SH0007 | 10565 | 9864 | - | similar to unknown protein |
| SH0008 | 11331 | 12617 | + | seryl-tRNA synthetase (Serine-tRNA ligase) |
| SH0009 | 13067 | 13762 | + | hypothetical protein, similar to branched-chain amino acid transport protein, AzlC family |
| SH0010 | 13759 | 14088 | + | similar to unknown protein |
| SH0011 | 14385 | 15353 | + | hypothetical protein, similar to homoserine-o-acetyltransferase |
| SH0012 | 15492 | 16403 | + | similar to unknown protein |
| SH0013 | 16431 | 18398 | + | similar to unknown protein |
| SH0014 | 18395 | 18841 | + | 50S ribosomal protein L9 |
| SH0015 | 19048 | 20448 | + | replicative DNA helicase |
| SH0016 | 20726 | 22009 | + | adenylosuccinate synthase |
| SH0017 | 23176 | 23877 | + | response regulator, VicR |
| SH0018 | 23890 | 25716 | + | signal transduction two-component sensor histidine kinase, VicK |
| SH0019 | 25706 | 27037 | + | similar to unknown protein |
| SH0020 | 27038 | 27829 | + | similar to unknown protein |
| SH0021 | 27853 | 27948 | + | no similarity |
| SH0022 | 28097 | 28897 | + | hypothetical protein, similar to metal-dependent hydrolases of the beta-lactamase superfamily I |
| SH0023 | 29302 | 29781 | + | similar to unknown protein, OrfX |
| SH0024 | 29835 | 30020 | + | similar to unknown protein |
| SH0025 | 30804 | 30130 | - | transposase for IS431 |
| SH0026 | 30884 | 31855 | + | no similarity |
| SH0027 | 32215 | 32117 | - | hypothetical protein, similar to transposase |
| SH0028 | 32399 | 32566 | + | hypothetical protein, similar to NADP-dependent alcohol dehydrogenase [truncated] |
| SH0029 | 32834 | 32977 | + | similar to unknown protein |
| SH0030 | 34335 | 33019 | - | transposase for ISSha1 |