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History

close this date 2009-05-09 ..... 1
2009-05-09 Kocuria rhizophila DC2201 database was updated (We changed EC number of several ORFs)
imageList of ORFs updated in annotation
IDoldnew
EC
KRH_18830 - 3.1.1.1

close this date 2009-03-31 ..... 1
2009-03-31 The entire genome of Kocuria rhizophila DC2201 was re-annotated
imageWe re-annotated Kocuria rhizophila DC2201 and updated the features of K. rhizophila genome in DOGAN database.
List of ORFs updated in annotation

EC
IDoldnew
KRH_001701.1.-.- 1.1.1.-
KRH_023002.3.1.- 2.3.1.174
KRH_027306.3.5.3
KRH_027602.7.3.- 2.7.13.-
KRH_030303.2.-.- 3.2.1.-
KRH_034302.6.1.- 2.6.1.57
KRH_043102.7.3.- 2.7.13.-
KRH_044201.4.3.19
KRH_045403.4.-.- 3.4.21.-
KRH_045902.7.7.- 2.7.7.7
KRH_047806.3.-.- 6.3.2.2
KRH_053601.8.4.8 1.8.4.10
KRH_066906.3.-.- 6.3.2.2
KRH_071502.7.3.- 2.7.13.-
KRH_082502.6.1.- 2.6.1.17
KRH_088102.7.3.- 2.7.13.-
KRH_089202.7.3.- 2.7.13.-
KRH_089802.4.-.- 2.4.1.-
KRH_093903.6.5.- 3.6.1.-
KRH_097202.4.-.- 2.4.1.-
KRH_097502.4.1.- 2.4.-.-
KRH_105202.3.1.41 2.3.1.180
KRH_107602.3.1.41 2.3.1.179
KRH_107802.3.1.41 2.3.1.180
KRH_125006.3.2.-
KRH_136002.7.6.5 2.7.6.5 / 3.1.7.2
KRH_144602.8.1.- 2.8.1.8
KRH_148602.6.1.10 6.3.2.10
KRH_149702.7.1.37 2.7.11.1
KRH_155402.6.1.11 / 2.6.1.17 2.6.1.11
KRH_160205.4.99.- 5.4.99.12
KRH_163202.7.3.- 2.7.13.-
KRH_165101.3.99.7 1.3.99.-
KRH_166302.7.3.- 2.7.13.-
KRH_170301.1.1.133
KRH_173903.1.21.- 3.1.-.-
KRH_174402.4.-.- 2.4.1.-
KRH_179101.3.99.1
KRH_180702.4.-.- 2.4.1.-
KRH_181001.1.-.- 1.1.3.17
KRH_183402.7.3.- 2.7.13.-
KRH_187502.7.3.- 2.7.13.-
KRH_188303.4.-.- 3.4.1.1
KRH_197701.7.3.3 3.5.2.17
KRH_201902.6.1.- 2.6.1.57
KRH_206602.7.1.37 2.7.11.1
KRH_206702.7.1.37 2.7.11.1
KRH_208502.5.1.- 2.5.1.29
KRH_209302.5.1.48 2.5.1.48 / 4.4.1.1
KRH_211001.5.1.29
KRH_215302.7.3.- 2.7.13.-
KRH_215701.14.-.-
KRH_217902.7.3.- 2.7.13.-
KRH_225002.1.1.- 2.1.1.63
KRH_231702.7.3.- 2.7.13.-
KRH_233003.3.2.3 3.3.2.-


Product
IDoldnew
KRH_00090NRAMP family transporter putative Nramp family transporter
KRH_00130MFS transporter putative MFS transporter
KRH_00210NagC family transcriptional regulator putative NagC family transcriptional regulator
KRH_002602,5-diketo-D-gluconic acid reductase 2,5-diketo-D-gluconate reductase A
KRH_00300MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_00310putative ABC transporter putative ABC transporter permease/ATP-binding protein
KRH_00630putative arsenite export protein putative arsenite resistance protein
KRH_00850TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_00890TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_00910putative heat shock protein Hsp15 putative RNA-binding protein
KRH_00920GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_01040MatE family transporter MatE family protein
KRH_01110putative amino acid lyase putative cystathionine lyase
KRH_01120pyridoxine biosynthesis protein PdxT pyridoxal phosphate synthase component Pdx2
KRH_01130pyridoxine biosynthesis protein PdxS pyridoxal phosphate synthase component Pdx1
KRH_01150GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_01190heavy metal transport/detoxification protein copper chaperone CopZ
KRH_01240MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_01250DtxR family transcriptional regulator putative DtxR family transcriptional regulator
KRH_01300manganese ABC transporter substrate-binding protein manganese ABC transporter manganese-binding protein
KRH_01420putative UvrABC system protein A UvrA-like protein
KRH_01430TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_01460MFS transporter putative MFS transporter
KRH_01710putative molybdenum-pterin-binding protein putative molybdenum-pterin binding protein
KRH_01720putative molybdenum transport molybdate-binding protein ModA putative molybdate ABC transporter molybdate-binding protein
KRH_01730putative molybdenum ABC transporter putative molybdate ABC transporter permease/ATP-binding protein
KRH_01870TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_01920RNA methyltransferase putative RNA methyltransferase
KRH_02030lysine-specific permease lysine permease
KRH_02110putative phenylacetic acid degradation NADH oxidoreductase PaaE putative phenylacetate-CoA oxygenase subunit PaaE
KRH_02120putative phenylacetic acid degradation protein PaaD putative phenylacetate-CoA oxygenase subunit PaaD
KRH_02130putative phenylacetic acid degradation protein PaaC putative phenylacetate-CoA oxygenase subunit PaaC
KRH_02140putative phenylacetic acid degradation protein PaaB putative phenylacetate-CoA oxygenase subunit PaaB
KRH_02150putative phenylacetic acid degradation protein PaaA putative phenylacetate-CoA oxygenase subunit PaaA
KRH_02160putative phenylacetic acid degradation protein PaaI putative thioesterase PaaI
KRH_02170phenylacetate-coenzyme A ligase phenylacetate--CoA ligase
KRH_02180TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02200putative aldehyde dehydrogenase PaaZ putative phenylacetic acid degradation protein PaaZ
KRH_02230Xre family DNA-binding protein putative Xre family DNA-binding protein
KRH_02280putative 3-hydroxybutyryl-CoA dehydrogenase putative 3-hydroxybutyryl-CoA dehydrogenase PaaH
KRH_02300putative beta-ketoadipyl CoA thiolase putative beta-ketoadipyl-CoA thiolase
KRH_02340succinyl-CoA--3-ketoacid-CoA transferase subunit A succinyl-CoA--3-ketoacid CoA-transferase subunit A
KRH_02350succinyl-CoA--3-ketoacid-CoA transferase subunit B succinyl-CoA--3-ketoacid CoA-transferase subunit B
KRH_02390putative short chain fatty acid transporter putative short-chain fatty acid transporter
KRH_02430TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02630TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02730phosphoribosylformylglycinamidine synthase phosphoribosylformylglycinamidine synthase PurS component
KRH_02760two-component histidine kinase putative two-component histidine kinase
KRH_02770CriR/CitT family two-component response regulator putative CriR family two-component response regulator
KRH_02780hypothetical protein putative iron-sulfur protein
KRH_02800MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_02890TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02920hypothetical protein putative beta-lactamase
KRH_02950AraC family transcriptional regulator (fragment) putative AraC family transcriptional regulator (fragment)
KRH_02960AraC family transcriptional regulator (fragment) putative AraC family transcriptional regulator (fragment)
KRH_02980queuine tRNA-ribosyltransferase tRNA-guanine transglycosylase
KRH_02990IclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_03000creatinase creatine amidinohydrolase
KRH_03120putative FAD linked oxidase putative FAD-linked oxidase
KRH_03150hypothetical protein acyl-CoA desaturase
KRH_03170putative deaminase putative tRNA-specific adenosine deaminase
KRH_03310TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_03330putative acylphosphatase acylphosphatase
KRH_03430putative phenylalanine aminotransferase putative aromatic amino acid aminotransferase
KRH_03520long-chain fatty-acid-CoA ligase long-chain fatty-acid--CoA ligase
KRH_03530LysR family transcriptional regulator putative LysR family transcriptional regulator
KRH_03540MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_03630HU_IHF family transcriptional regulator putative DNA-binding protein HU
KRH_03650putative copper resistance protein C putative copper resistance protein
KRH_03770AEC family transporter putative AEC family transporter
KRH_03800MFS transporter putative MFS transporter
KRH_03940TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_04040sodium/alanine symporter putative sodium/alanine symporter
KRH_04070sodium/alanine symporter putative sodium/alanine symporter
KRH_04230phosphoribosylformylglycinamidine cyclo-ligase aminoimidazole ribonucleotide synthetase
KRH_04310two-component histidine kinase putative two-component histidine kinase
KRH_04330NarL family two-component response regulator putative NarL family two-component response regulator
KRH_04340GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_04460MFS transporter putative MFS transporter
KRH_04470putative FAD linked oxidase putative FAD-linked oxidase
KRH_04530Crp family transcriptional regulator CRP/FNR family transcriptional regulator
KRH_04790hypothetical protein putative Ktr system potassium uptake protein KtrA
KRH_04800putative cation transporter putative Ktr system potassium uptake protein KtrB
KRH_04820ArsR family transcriptional regulator putative ArsR family transcriptional regulator
KRH_04840GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_04870phosphoglycerate/bisphosphoglycerate mutase family protein phosphoglycerate mutase family protein
KRH_04880thiol-disulfide oxidoreductase ResA cytochrome c biogenesis protein ResA
KRH_04890cytochrome c-type biogenesis protein CcdA cytochrome c biogenesis protein CcdA
KRH_05030glutamyl-tRNA synthetase class Ic family protein glutamyl-Q-tRNA(Asp) synthetase
KRH_05070L-carnitine dehydratase/bile acid-inducible protein F family protein CaiB/BaiF family protein
KRH_05080LysR family transcriptional regulator putative LysR family transcriptional regulator
KRH_05110TRAP family transporter putative TRAP family transporter
KRH_05120TRAP transporter solute receptor TAXI family protein TRAP transporter solute receptor family protein
KRH_05280Fur family transcriptional regulator putative Fur family transcriptional regulator
KRH_05340hypothetical protein putative phosphatase
KRH_05350putative nitrite/sulfite reductase sulfite reductase
KRH_05360phosphoadenosine phosphosulfate reductase adenosine 5'-phosphosulfate reductase
KRH_05450sodium-dependent transporter NSS family transporter
KRH_05510Fur family transcriptional regulator putative Fur family transcriptional regulator
KRH_05520RNA polymerase ECF-type sigma factor putative RNA polymerase ECF-type sigma factor
KRH_05530protease HtpX homolog putative protease HtpX
KRH_05610hypothetical protein beta-hydroxyacyl-[acyl-carrier-protein] dehydratase subunit HadA
KRH_05620hypothetical protein beta-hydroxyacyl-[acyl-carrier-protein] dehydratase subunit HadB
KRH_05900molybdenum cofactor biosynthesis protein A molybdenum cofactor biosynthesis protein MoaA
KRH_05920molybdenum cofactor biosynthesis protein C molybdenum cofactor biosynthesis protein MoaC
KRH_05930putative bifunctional molybdopterin biosynthesis protein MoaE putative molybdenum cofactor biosynthesis bifunctional protein
KRH_06030IclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_06070putative 3-oxoadipate enol-lactonase putative 3-oxoadipate enol-lactone hydrolase
KRH_06380hypothetical protein putative rRNA methyltransferase
KRH_06520glucosamine--fructose-6-phosphate aminotransferase glucosamine-6-phosphate synthase
KRH_06580putative aldo/keto reductase putative NADPH-dependent L-glyceraldehyde 3-phosphate reductase
KRH_06650drug resistance efflux protein putative drug resistance efflux protein
KRH_06710iron compound ABC transporter iron compound-binding protein putative ABC transporter substrate-binding protein
KRH_06720iron compound ABC transporter permease protein putative ABC transporter permease protein
KRH_06730iron compound ABC transporter permease protein putative ABC transporter permease protein
KRH_06740iron compound ABC transporter ATP-binding protein putative ABC transporter ATP-binding protein
KRH_06820GMP synthase GMP synthetase
KRH_06930TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_07000putative cobalt-zinc-cadmium efflux protein putative cation efflux protein
KRH_07010ArsR family transcriptional regulator putative ArsR family transcriptional regulator
KRH_07050CorA family transporter putative metal ion transport protein
KRH_07130RmuC family protein hypothetical protein
KRH_07140NarL family two-component response regulator putative NarL family two-component response regulator
KRH_07150two-component histidine kinase putative two-component histidine kinase
KRH_07190MFS transporter putative MFS transporter
KRH_07230Xre family DNA-binding protein putative Xre family DNA-binding protein
KRH_07250TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_07310ArsR family transcriptional regulator putative ArsR family transcriptional regulator
KRH_07440Xre family DNA-binding protein putative Xre family DNA-binding protein
KRH_07630TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_07790putative formate dehydrogenase iron-sulfur subunit putative formate dehydrogenase iron-sulfur protein
KRH_08240ferredoxin 7Fe ferredoxin
KRH_08250aminotransferase succinyldiaminopimelate aminotransferase
KRH_08470TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_08580UvrD/REP helicase family protein UvrD/Rep helicase family protein
KRH_08590UvrD/REP helicase family protein UvrD/Rep helicase family protein
KRH_08620putative ATP-dependent DNA helicase ATP-dependent DNA helicase UvrD2
KRH_08650LacI family transcriptional regulator putative LacI family transcriptional regulator
KRH_08740putative protease Do S1C family peptidase
KRH_08810two-component sensor histidine kinase MtrB two-component histidine kinase MtrB
KRH_08920two-component histidine kinase putative two-component histidine kinase
KRH_08980UDP-galactofuranosyl transferase galactofuranosyltransferase
KRH_09360tmRNA transfer-messenger RNA
KRH_09390putative GTPase putative ribosome small subunit-dependent GTPase A
KRH_09420RNA polymerase ECF-type sigma factor RNA polymerase ECF-type sigma factor SigH
KRH_09520Fur family transcriptional regulator putative Fur family transcriptional regulator
KRH_09540putative hydrolase HIT family protein
KRH_09550ATP-dependent helicase HrpA ATP-dependent RNA helicase HrpA
KRH_09720putative glycosyltransferase galactofuranosyltransferase
KRH_09810ATP synthase subunit delta ATP synthase delta chain
KRH_09820ATP synthase subunit alpha ATP synthase alpha chain
KRH_09840ATP synthase subunit beta ATP synthase beta chain
KRH_09980ATP-dependent Clp protease adaptor protein ClpS putative ATP-dependent Clp protease adaptor protein ClpS
KRH_10150MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_10310IclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_10550MFS transporter putative MFS transporter
KRH_10560cell division protein FtsY signal recognition particle receptor
KRH_10570ammonium transporter ammonium transporter AmtB
KRH_10580nitrogen regulatory protein P-II nitrogen regulatory protein PII
KRH_10720putative magnesium chelatase hypothetical protein
KRH_107603-oxoacyl-[acyl-carrier-protein] synthase 3-oxoacyl-[acyl-carrier-protein] synthase II
KRH_10790malonyl CoA-acyl carrier protein transacylase malonyl-CoA--acyl carrier protein transacylase
KRH_10800CdaR family transcriptional regulator putative CdaR family transcriptional regulator
KRH_10960siderophore biosynthesis protein putative siderophore biosynthesis protein
KRH_10980putative siderophore-interacting protein hypothetical protein
KRH_11000putative acyl-CoA thioesterase acyl-CoA thioesterase
KRH_11050ribose 5-phosphate isomerase B ribose-5-phosphate isomerase B
KRH_11110DSBA oxidoreductase family protein hypothetical protein
KRH_11160iron compound ABC transporter iron compound-binding protein putative iron-siderophore ABC transporter substrate-binding protein
KRH_11170iron compound ABC transporter permease protein putative iron-siderophore ABC transporter permease protein
KRH_11180iron compound ABC transporter permease protein putative iron-siderophore ABC transporter permease protein
KRH_11190iron compound ABC transporter ATP-binding protein putative iron-siderophore ABC transporter ATP-binding protein
KRH_11480thioesterase putative type II thioesterase
KRH_11520Tat-translocated enzyme family protein putative peroxidase
KRH_11530MFS transporter (fragment) putative MFS transporter (fragment)
KRH_11540MFS transporter (fragment) putative MFS transporter (fragment)
KRH_11660putative rRNA (cytosine-C(5)-)-methyltransferase putative rRNA methyltransferase
KRH_11670ribulose-phosphate 3-epimerase ribulose-5-phosphate 3-epimerase
KRH_11800indole-3-glycerol phosphate synthase/tryptophan synthase beta chain indole-3-glycerol-phosphate synthase/tryptophan synthase beta chain
KRH_11830glutamate synthase large chain glutamate synthase large subunit
KRH_11840glutamate synthase small chain glutamate synthase small subunit
KRH_12010MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_12090hypothetical protein WhiA-like protein
KRH_12120triosephosphate isomerase triose-phosphate isomerase
KRH_12250SufR family transcriptional regulator putative SufR family transcriptional regulator
KRH_1249050S ribosomal protein L31 50S ribosomal protein L31 type B
KRH_12510LytR family regulatory protein putative LytR family regulatory protein
KRH_12740TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_12820menaquinol-cytochrome c reductase iron-sulfur subunit menaquinol-cytochrome c reductase iron-sulfur protein
KRH_12840hypothetical membrane protein putative cytochrome c oxidase subunit IV
KRH_12860cytochrome c oxidase subunit II precursor cytochrome c oxidase subunit II
KRH_12940LytR family regulatory protein putative LytR family regulatory protein
KRH_13010heat-inducible transcription repressor HrcA heat-inducible transcriptional repressor HrcA
KRH_13050GTP-binding protein LepA elongation factor LepA
KRH_13100NADH--flavin oxidoreductase NADH-dependent flavin oxidoreductase
KRH_13250putative primosomal protein N' putative primosomal protein n'
KRH_13270putative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthase putative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
KRH_13370PyrR bifunctional protein bifunctional protein PyrR
KRH_13380antitermination factor NusB transcription antitermination protein NusB
KRH_13550MFS transporter putative MFS transporter
KRH_13600GTP pyrophosphokinase GTP pyrophosphokinase/guanosine-3',5'-bis(diphosphate) 3-pyrophosphohydrolase
KRH_13630hypothetical protein putative protein-export membrane protein YajC
KRH_13700putative hydrolase HIT family protein
KRH_13760putative polyprenol phosphate mannosyl transferase putative polyprenol-phosphate mannosyltransferase
KRH_13800putative Sec-independent protein translocase protein TatA/TatE putative Sec-independent protein translocase protein TatA
KRH_13820hypothetical protein PafBC-homolog
KRH_13850hypothetical protein PafA-homolog
KRH_13860hypothetical protein putative Pup-homolog
KRH_13870hypothetical protein putative PafA-homolog
KRH_14150aconitate hydratase aconitase
KRH_14170putative amino acid transporter hypothetical membrane protein
KRH_14180potassium uptake protein Trk system potassium uptake protein TrkA
KRH_14190potassium uptake protein Trk system potassium uptake protein TrkA
KRH_14380MFS transporter putative MFS transporter
KRH_14400leucine aminopeptidase aminopeptidase A
KRH_14520glutathione-dependent formaldehyde dehydrogenase putative glutathione-dependent formaldehyde dehydrogenase
KRH_14650serine O-acetyltransferase serine acetyltransferase
KRH_14730lipoprotein signal peptidase signal peptidase II
KRH_14900S-adenosyl-methyltransferase MraW methyltransferase MraW
KRH_15030mycothiol reductase mycothione reductase
KRH_15060MerR family transcriptional regulator putative MerR family transcriptional regulator
KRH_15080MerR family transcriptional regulator putative MerR family transcriptional regulator
KRH_15100glycine cleavage system H protein glycine cleavage system H-protein
KRH_15110putative cation transporter putative Ktr system potassium uptake protein KtrB
KRH_15120hypothetical protein putative Ktr system potassium uptake protein KtrA
KRH_15140putative Na(+)/H(+) antiporter putative CPA1 family transporter
KRH_15290GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_15500long-chain fatty-acid-CoA ligase long-chain fatty-acid--CoA ligase
KRH_15540acetylornithine/succinyldiaminopimelate aminotransferase acetylornithine aminotransferase
KRH_15860Xre family DNA-binding protein putative Xre family DNA-binding protein
KRH_15890DNA translocase FtsK cell division protein FtsK
KRH_15950polyribonucleotide nucleotidyltransferase guanosine pentaphosphate synthetase/polynucleotide phosphorylase
KRH_159802,5-diketo-D-gluconic acid reductase 2,5-diketo-D-gluconate reductase B
KRH_15990riboflavin kinase/FMN adenylyltransferase flavokinase/FAD synthetase
KRH_16180sodium/solute symporter putative acetate permease
KRH_16450putative dihydrouridine synthase putative tRNA-dihydrouridine synthase
KRH_16510putative glutaryl-CoA dehydrogenase putative acyl-CoA dehydrogenase
KRH_16520MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_16630two-component histidine kinase putative two-component histidine kinase
KRH_16640NarL family two-component response regulator putative NarL family two-component response regulator
KRH_16660hypothetical membrane protein putative ABC transporter permease protein
KRH_16720inositol-1-monophosphatase inositol monophosphatase
KRH_16730NAD-dependent DNA ligase NAD(+)-dependent DNA ligase
KRH_16770TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_16790putative serine/threonine phosphatase putative serine/threonine protein phosphatase
KRH_16820biotin-[acetyl-CoA-carboxylase] ligase biotin protein ligase
KRH_17030putative dTDP-4-dehydrorhamnose reductase putative dTDP-6-deoxy-L-lyxo-4-hexulose reductase
KRH_17040putative dTDP-4-dehydrorhamnose 3,5-epimerase putative dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase
KRH_17070putative uroporphyrinogen III synthase putative uroporphyrinogen-III synthase
KRH_17240ribose-phosphate pyrophosphokinase phosphoribosylpyrophosphate synthase
KRH_17340TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_17440putative glycosyltransferase putative protein O-mannosyltransferase
KRH_17480putative regulatory protein WhiB WhiB family regulatory protein
KRH_17520LytR family regulatory protein putative LytR family regulatory protein
KRH_17530FemAB family protein hypothetical protein
KRH_17560fructose-1,6-bisphosphatase class II fructose 1,6-bisphosphatase class II
KRH_17580putative carbonic anhydrase carbonic anhydrase
KRH_17640PhoH-like protein putative PhoH-like protein
KRH_17690mycothiol conjugate amidase Mca mycothiol S-conjugate amidase Mca
KRH_179502',5' RNA ligase family protein hypothetical protein
KRH_17970putative exodeoxyribonuclease III putative exodeoxyribonuclease
KRH_18040phosphoribosylglycinamide formyltransferase glycinamide ribonucleotide transformylase
KRH_18070mannosyltransferase PimB mannosyltransferase MgtA
KRH_18120high-affinity choline transport protein choline transporter
KRH_18140SNF2 family helicase putative helicase
KRH_18200ATP-dependent DNA helicase PcrA ATP-dependent DNA helicase UvrD1
KRH_18270iron dependent regulatory protein IdeR iron-dependent regulator IdeR
KRH_18280putative phosphoserine aminotransferase phosphoserine aminotransferase
KRH_18360ribonuclease H ribonuclease HI
KRH_18470putative fructose-specific phosphotransferase system enzyme IIABC component putative fructose-specific phosphotransferase system enzyme II
KRH_18490DeoR family transcriptional regulator putative DeoR family transcriptional regulator
KRH_18500putative ABC transporter putative ABC transporter permease/ATP-binding protein
KRH_18510putative ABC transporter putative ABC transporter permease/ATP-binding protein
KRH_18530DSBA oxidoreductase family protein hypothetical protein
KRH_18570TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_18610putative FAD linked oxidase putative FAD-linked oxidase
KRH_18910putative pyrimidine-nucleoside phosphorylase putative pyrimidine nucleoside phosphorylase
KRH_19050phosphate transport system ATP-binding protein phosphate ABC transporter ATP-binding protein
KRH_19060phosphate transport system permease protein phosphate ABC transporter permease protein
KRH_19070phosphate transport system permease protein phosphate ABC transporter permease protein
KRH_19080phosphate transport system phosphate-binding protein phosphate ABC transporter phosphate-binding protein
KRH_19190pantoate--beta-alanine ligase pantothenate synthetase
KRH_19280cell division protein FtsH ATP-dependent protease FtsH
KRH_19560putative sulfatase hypothetical membrane protein
KRH_19570DtxR family transcriptional regulator putative DtxR family transcriptional regulator
KRH_19610TDT family transporter putative TDT family transporter
KRH_19620LysR family transcriptional regulator putative LysR family transcriptional regulator
KRH_19770putative uricase putative 5-hydroxyisourate hydrolase
KRH_19800IclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_19930putative aldo/keto reductase putative aldo-keto reductase
KRH_19970Xre family DNA-binding protein putative Xre family DNA-binding protein
KRH_19980MFS transporter putative MFS transporter
KRH_20030GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_20050putative molybdopterin-guanine dinucleotide biosynthesis protein A putative molybdopterin-guanine dinucleotide biosynthesis protein MobA
KRH_20080NAD(+)-dependent glutamate dehydrogenase NAD-dependent glutamate dehydrogenase
KRH_20090putative formate/nitrite transporter putative formate transporter
KRH_20180AsnC family transcriptional regulator putative AsnC family transcriptional regulator
KRH_20190putative phenylalanine aminotransferase putative aromatic amino acid aminotransferase
KRH_20300MFS transporter putative MFS transporter
KRH_20630serine/threonine phosphatase serine/threonine protein phosphatase PstP
KRH_20650penicillin-binding protein penicillin-binding protein PbpA
KRH_20790GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_20860MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_209105-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase cobalamin-independent methionine synthase
KRH_20970TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_21040MFS transporter putative MFS transporter
KRH_21090MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_21100NAD(P)H-dependent FMN reductase putative NADH-dependent FMN reductase
KRH_21150GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_21210TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_21240AsnC family transcriptional regulator putative AsnC family transcriptional regulator
KRH_21310MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_21490GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_21530two-component histidine kinase putative two-component histidine kinase
KRH_21540NarL family two-component response regulator putative NarL family two-component response regulator
KRH_21560MFS transporter putative MFS transporter
KRH_21660nickel-transport protein putative nickel transporter
KRH_21750TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_21780NarL family two-component response regulator putative NarL family two-component response regulator
KRH_21790two-component histidine kinase putative two-component histidine kinase
KRH_218803-mercaptopyruvate sulfurtransferase putative 3-mercaptopyruvate sulfurtransferase
KRH_21970RNA polymerase ECF-type sigma factor putative RNA polymerase ECF-type sigma factor
KRH_22040GntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_22090small multidrug resistance protein multidrug efflux transporter
KRH_22100small multidrug resistance protein multidrug efflux transporter
KRH_22110TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22230heat shock protein Hsp20 family protein putative heat shock protein
KRH_22280TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22300MFS transporter putative MFS transporter
KRH_22360flavin-containing amine oxidase tyramine oxidase
KRH_22370AraC family transcriptional regulator putative AraC family transcriptional regulator
KRH_22380putative phenylacetic acid degradation protein putative thioesterase
KRH_22440acyltransferase putative acyltransferase
KRH_22490putative DNA-3-methyladenine glycosylase II putative methylated-DNA--protein-cysteine methyltransferase/3-methyladenine-DNA glycosylase II
KRH_22500putative methyltransferase putative methylated-DNA--protein-cysteine methyltransferase
KRH_22780TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22880MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_22900TetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22930IclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_23000acetamidase/formamidase acetamidase
KRH_23250MFS transporter putative MFS transporter
KRH_23260MarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_23270CdaR family transcriptional regulator putative CdaR family transcriptional regulator
KRH_23540hypothetical membrane protein OxaA family protein


Category
IDoldnew
KRH_001103.3 3.9
KRH_002601.9 1.1
KRH_004003.3 3.9
KRH_004201.5 1.9
KRH_004501.5 1.6
KRH_005109.2 3.9
KRH_006303.1 3.9
KRH_009103.9 2.9
KRH_010403.1 9.2
KRH_011109.1 1.5
KRH_011903.1 3.9
KRH_014101.5 1.1
KRH_014202.3 9.2
KRH_017103.1 9.1
KRH_019309.1 1.3
KRH_021101.9 1.7
KRH_021201.9 1.7
KRH_021301.9 1.7
KRH_021401.9 1.7
KRH_021501.9 1.7
KRH_021601.9 1.7
KRH_021701.5 1.7
KRH_022001.9 1.7
KRH_023001.3 1.7
KRH_023301.1 1.3
KRH_023401.7 1.3
KRH_023501.7 1.3
KRH_027809.98 9.1
KRH_029209.98 3.9
KRH_031509.98 1.3
KRH_031609.1 1.2
KRH_031709.1 2.2
KRH_036302.1 2.3
KRH_039803.3 3.9
KRH_039903.3 3.9
KRH_040103.9 2.1
KRH_042003.3 3.9
KRH_044909.1 3.3
KRH_047909.98 3.1
KRH_048803.3 1.2
KRH_048903.3 1.2
KRH_049003.3 1.2
KRH_049103.3 1.2
KRH_050309.2 2.2
KRH_052901.5 3.9
KRH_053409.98 9.1
KRH_055001.5 3.9
KRH_055303.3 3.9
KRH_056109.98 1.3
KRH_056209.98 1.3
KRH_057101.7 1.9
KRH_059401.2 9.2
KRH_063809.98 2.2
KRH_064502.9 2.2
KRH_065201.5 1.1
KRH_065809.1 1.1
KRH_066201.7 1.9
KRH_066801.9 3.9
KRH_067503.3 3.9
KRH_067603.3 3.9
KRH_071309.2 9.98
KRH_078301.5 2.2
KRH_082109.1 2.9
KRH_082201.7 1.9
KRH_082509.1 1.5
KRH_084209.1 3.9
KRH_087403.9 9.1
KRH_087601.5 1.9
KRH_089309.1 3.3
KRH_089803.9 3.3
KRH_092309.1 2.3
KRH_093909.1 2.9
KRH_095409.1 9.2
KRH_096902.2 3.9
KRH_097209.1 3.3
KRH_099803.3 3.9
KRH_101301.9 1.1
KRH_105001.3 1.7
KRH_105603.1 3.3
KRH_107201.9 9.98
KRH_108101.5 1.1
KRH_108301.2 3.9
KRH_109409.1 1.7
KRH_109701.9 1.5
KRH_109803.9 9.98
KRH_110401.5 3.9
KRH_110803.3 3.9
KRH_110903.3 3.9
KRH_111003.3 3.9
KRH_111109.2 9.98
KRH_113209.1 3.9
KRH_115209.2 9.1
KRH_115801.4 1.2
KRH_118201.3 3.9
KRH_120909.98 9.2
KRH_122001.2 1.6
KRH_122601.2 1.9
KRH_122701.2 1.9
KRH_122801.2 1.9
KRH_127101.5 3.9
KRH_128409.98 1.2
KRH_128701.2 1.9
KRH_129509.1 2.9
KRH_130003.3 3.9
KRH_130509.1 2.2
KRH_131209.1 2.9
KRH_133201.5 1.4
KRH_133301.5 1.4
KRH_136309.98 3.1
KRH_137009.1 9.2
KRH_138209.98 9.2
KRH_138303.3 3.9
KRH_138403.3 3.9
KRH_138509.98 9.2
KRH_138609.98 9.2
KRH_138709.98 9.2
KRH_139201.7 1.9
KRH_139303.9 3.3
KRH_140903.3 3.9
KRH_141102.9 2.2
KRH_141703.1 9.98
KRH_144009.1 3.9
KRH_145201.9 1.1
KRH_146303.3 3.9
KRH_147202.9 2.2
KRH_149003.3 9.1
KRH_149103.3 9.2
KRH_150301.7 1.9
KRH_151209.98 3.1
KRH_152009.1 2.9
KRH_159801.9 1.1
KRH_160202.9 2.2
KRH_166609.98 3.1
KRH_167903.9 3.2
KRH_168003.2 1.4
KRH_173602.1 2.2
KRH_174409.1 3.9
KRH_174809.1 3.3
KRH_175309.2 9.98
KRH_175801.5 1.9
KRH_176901.7 1.9
KRH_179509.2 9.98
KRH_180703.9 3.3
KRH_183703.3 3.9
KRH_185309.2 9.98
KRH_188009.1 1.5
KRH_191503.3 3.9
KRH_194801.5 1.1
KRH_195609.1 9.98
KRH_198801.1 1.3
KRH_206303.9 3.2
KRH_211001.9 9.1
KRH_220101.5 1.7
KRH_220201.5 1.7
KRH_220501.5 1.7
KRH_220709.2 3.9
KRH_221401.2 1.9
KRH_221801.6 1.4
KRH_222309.2 3.9
KRH_223609.1 1.5
KRH_223801.9 9.1
KRH_225009.1 2.3
KRH_226301.5 3.9
KRH_229909.1 2.1
KRH_230001.9 1.1
KRH_232302.3 2.9
KRH_234302.1 2.2
KRH_234701.4 1.2
KRH_235203.3 9.1
KRH_235409.98 9.2


Gene
IDoldnew
KRH_00910hslR
KRH_01120pdxT pdx2
KRH_01130pdxS pdx1
KRH_01550fprA
KRH_02330bdh bdhA
KRH_04550aroD aroQ
KRH_05350nirA sirA
KRH_05930moaE
KRH_06670rimI
KRH_06890rimJ
KRH_10770acpP acpM
KRH_11660rsmB
KRH_11710ribA
KRH_12490rpmE rpmE2
KRH_12660rkpK udg
KRH_13800tatA/tatE tatA
KRH_15950pnp gpsI
KRH_17480whiB
KRH_17560glpX fbp
KRH_17890manC
KRH_18070pimB mgtA
KRH_18200pcrA uvrD1
KRH_19710frk
KRH_19810aceB glcB
KRH_22860phrB phr


Position
IDoldnew
KRH_07770839821..840387 839821..843204
KRH_07780840457..843204 Deleted
KRH_189202168967..2171480 2170263..2171480

close this date 2008-03-31 ..... 1
2008-03-31 Release of the Kocuria rhizophila genomic sequence data
imageWe published the genomic data of Kocuria rhizophila DC2201 (NBRC 103217) including the information of DNA clones distributed from the NBRC.
This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan.