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History

2009-05-09 2009-05-09
Kocuria rhizophila DC2201 database was updated (We changed EC number of several ORFs)
imageList of ORFs updated in annotation
IDoldnew
KRH_18830 EC - 3.1.1.1

2009-03-31 2009-03-31
The entire genome of Kocuria rhizophila DC2201 was re-annotated
imageWe re-annotated Kocuria rhizophila DC2201 and updated the features of K. rhizophila genome in DOGAN database.
List of ORFs updated in annotation
EC
IDoldnew
KRH_00170EC1.1.-.- 1.1.1.-
KRH_02300EC2.3.1.- 2.3.1.174
KRH_02730EC6.3.5.3
KRH_02760EC2.7.3.- 2.7.13.-
KRH_03030EC3.2.-.- 3.2.1.-
KRH_03430EC2.6.1.- 2.6.1.57
KRH_04310EC2.7.3.- 2.7.13.-
KRH_04420EC1.4.3.19
KRH_04540EC3.4.-.- 3.4.21.-
KRH_04590EC2.7.7.- 2.7.7.7
KRH_04780EC6.3.-.- 6.3.2.2
KRH_05360EC1.8.4.8 1.8.4.10
KRH_06690EC6.3.-.- 6.3.2.2
KRH_07150EC2.7.3.- 2.7.13.-
KRH_08250EC2.6.1.- 2.6.1.17
KRH_08810EC2.7.3.- 2.7.13.-
KRH_08920EC2.7.3.- 2.7.13.-
KRH_08980EC2.4.-.- 2.4.1.-
KRH_09390EC3.6.5.- 3.6.1.-
KRH_09720EC2.4.-.- 2.4.1.-
KRH_09750EC2.4.1.- 2.4.-.-
KRH_10520EC2.3.1.41 2.3.1.180
KRH_10760EC2.3.1.41 2.3.1.179
KRH_10780EC2.3.1.41 2.3.1.180
KRH_12500EC6.3.2.-
KRH_13600EC2.7.6.5 2.7.6.5 / 3.1.7.2
KRH_14460EC2.8.1.- 2.8.1.8
KRH_14860EC2.6.1.10 6.3.2.10
KRH_14970EC2.7.1.37 2.7.11.1
KRH_15540EC2.6.1.11 / 2.6.1.17 2.6.1.11
KRH_16020EC5.4.99.- 5.4.99.12
KRH_16320EC2.7.3.- 2.7.13.-
KRH_16510EC1.3.99.7 1.3.99.-
KRH_16630EC2.7.3.- 2.7.13.-
KRH_17030EC1.1.1.133
KRH_17390EC3.1.21.- 3.1.-.-
KRH_17440EC2.4.-.- 2.4.1.-
KRH_17910EC1.3.99.1
KRH_18070EC2.4.-.- 2.4.1.-
KRH_18100EC1.1.-.- 1.1.3.17
KRH_18340EC2.7.3.- 2.7.13.-
KRH_18750EC2.7.3.- 2.7.13.-
KRH_18830EC3.4.-.- 3.4.1.1
KRH_19770EC1.7.3.3 3.5.2.17
KRH_20190EC2.6.1.- 2.6.1.57
KRH_20660EC2.7.1.37 2.7.11.1
KRH_20670EC2.7.1.37 2.7.11.1
KRH_20850EC2.5.1.- 2.5.1.29
KRH_20930EC2.5.1.48 2.5.1.48 / 4.4.1.1
KRH_21100EC1.5.1.29
KRH_21530EC2.7.3.- 2.7.13.-
KRH_21570EC1.14.-.-
KRH_21790EC2.7.3.- 2.7.13.-
KRH_22500EC2.1.1.- 2.1.1.63
KRH_23170EC2.7.3.- 2.7.13.-
KRH_23300EC3.3.2.3 3.3.2.-

Product
IDoldnew
KRH_00090ProductNRAMP family transporter putative Nramp family transporter
KRH_00130ProductMFS transporter putative MFS transporter
KRH_00210ProductNagC family transcriptional regulator putative NagC family transcriptional regulator
KRH_00260Product2,5-diketo-D-gluconic acid reductase 2,5-diketo-D-gluconate reductase A
KRH_00300ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_00310Productputative ABC transporter putative ABC transporter permease/ATP-binding protein
KRH_00630Productputative arsenite export protein putative arsenite resistance protein
KRH_00850ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_00890ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_00910Productputative heat shock protein Hsp15 putative RNA-binding protein
KRH_00920ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_01040ProductMatE family transporter MatE family protein
KRH_01110Productputative amino acid lyase putative cystathionine lyase
KRH_01120Productpyridoxine biosynthesis protein PdxT pyridoxal phosphate synthase component Pdx2
KRH_01130Productpyridoxine biosynthesis protein PdxS pyridoxal phosphate synthase component Pdx1
KRH_01150ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_01190Productheavy metal transport/detoxification protein copper chaperone CopZ
KRH_01240ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_01250ProductDtxR family transcriptional regulator putative DtxR family transcriptional regulator
KRH_01300Productmanganese ABC transporter substrate-binding protein manganese ABC transporter manganese-binding protein
KRH_01420Productputative UvrABC system protein A UvrA-like protein
KRH_01430ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_01460ProductMFS transporter putative MFS transporter
KRH_01710Productputative molybdenum-pterin-binding protein putative molybdenum-pterin binding protein
KRH_01720Productputative molybdenum transport molybdate-binding protein ModA putative molybdate ABC transporter molybdate-binding protein
KRH_01730Productputative molybdenum ABC transporter putative molybdate ABC transporter permease/ATP-binding protein
KRH_01870ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_01920ProductRNA methyltransferase putative RNA methyltransferase
KRH_02030Productlysine-specific permease lysine permease
KRH_02110Productputative phenylacetic acid degradation NADH oxidoreductase PaaE putative phenylacetate-CoA oxygenase subunit PaaE
KRH_02120Productputative phenylacetic acid degradation protein PaaD putative phenylacetate-CoA oxygenase subunit PaaD
KRH_02130Productputative phenylacetic acid degradation protein PaaC putative phenylacetate-CoA oxygenase subunit PaaC
KRH_02140Productputative phenylacetic acid degradation protein PaaB putative phenylacetate-CoA oxygenase subunit PaaB
KRH_02150Productputative phenylacetic acid degradation protein PaaA putative phenylacetate-CoA oxygenase subunit PaaA
KRH_02160Productputative phenylacetic acid degradation protein PaaI putative thioesterase PaaI
KRH_02170Productphenylacetate-coenzyme A ligase phenylacetate--CoA ligase
KRH_02180ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02200Productputative aldehyde dehydrogenase PaaZ putative phenylacetic acid degradation protein PaaZ
KRH_02230ProductXre family DNA-binding protein putative Xre family DNA-binding protein
KRH_02280Productputative 3-hydroxybutyryl-CoA dehydrogenase putative 3-hydroxybutyryl-CoA dehydrogenase PaaH
KRH_02300Productputative beta-ketoadipyl CoA thiolase putative beta-ketoadipyl-CoA thiolase
KRH_02340Productsuccinyl-CoA--3-ketoacid-CoA transferase subunit A succinyl-CoA--3-ketoacid CoA-transferase subunit A
KRH_02350Productsuccinyl-CoA--3-ketoacid-CoA transferase subunit B succinyl-CoA--3-ketoacid CoA-transferase subunit B
KRH_02390Productputative short chain fatty acid transporter putative short-chain fatty acid transporter
KRH_02430ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02630ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02730Productphosphoribosylformylglycinamidine synthase phosphoribosylformylglycinamidine synthase PurS component
KRH_02760Producttwo-component histidine kinase putative two-component histidine kinase
KRH_02770ProductCriR/CitT family two-component response regulator putative CriR family two-component response regulator
KRH_02780Producthypothetical protein putative iron-sulfur protein
KRH_02800ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_02890ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_02920Producthypothetical protein putative beta-lactamase
KRH_02950ProductAraC family transcriptional regulator (fragment) putative AraC family transcriptional regulator (fragment)
KRH_02960ProductAraC family transcriptional regulator (fragment) putative AraC family transcriptional regulator (fragment)
KRH_02980Productqueuine tRNA-ribosyltransferase tRNA-guanine transglycosylase
KRH_02990ProductIclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_03000Productcreatinase creatine amidinohydrolase
KRH_03120Productputative FAD linked oxidase putative FAD-linked oxidase
KRH_03150Producthypothetical protein acyl-CoA desaturase
KRH_03170Productputative deaminase putative tRNA-specific adenosine deaminase
KRH_03310ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_03330Productputative acylphosphatase acylphosphatase
KRH_03430Productputative phenylalanine aminotransferase putative aromatic amino acid aminotransferase
KRH_03520Productlong-chain fatty-acid-CoA ligase long-chain fatty-acid--CoA ligase
KRH_03530ProductLysR family transcriptional regulator putative LysR family transcriptional regulator
KRH_03540ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_03630ProductHU_IHF family transcriptional regulator putative DNA-binding protein HU
KRH_03650Productputative copper resistance protein C putative copper resistance protein
KRH_03770ProductAEC family transporter putative AEC family transporter
KRH_03800ProductMFS transporter putative MFS transporter
KRH_03940ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_04040Productsodium/alanine symporter putative sodium/alanine symporter
KRH_04070Productsodium/alanine symporter putative sodium/alanine symporter
KRH_04230Productphosphoribosylformylglycinamidine cyclo-ligase aminoimidazole ribonucleotide synthetase
KRH_04310Producttwo-component histidine kinase putative two-component histidine kinase
KRH_04330ProductNarL family two-component response regulator putative NarL family two-component response regulator
KRH_04340ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_04460ProductMFS transporter putative MFS transporter
KRH_04470Productputative FAD linked oxidase putative FAD-linked oxidase
KRH_04530ProductCrp family transcriptional regulator CRP/FNR family transcriptional regulator
KRH_04790Producthypothetical protein putative Ktr system potassium uptake protein KtrA
KRH_04800Productputative cation transporter putative Ktr system potassium uptake protein KtrB
KRH_04820ProductArsR family transcriptional regulator putative ArsR family transcriptional regulator
KRH_04840ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_04870Productphosphoglycerate/bisphosphoglycerate mutase family protein phosphoglycerate mutase family protein
KRH_04880Productthiol-disulfide oxidoreductase ResA cytochrome c biogenesis protein ResA
KRH_04890Productcytochrome c-type biogenesis protein CcdA cytochrome c biogenesis protein CcdA
KRH_05030Productglutamyl-tRNA synthetase class Ic family protein glutamyl-Q-tRNA(Asp) synthetase
KRH_05070ProductL-carnitine dehydratase/bile acid-inducible protein F family protein CaiB/BaiF family protein
KRH_05080ProductLysR family transcriptional regulator putative LysR family transcriptional regulator
KRH_05110ProductTRAP family transporter putative TRAP family transporter
KRH_05120ProductTRAP transporter solute receptor TAXI family protein TRAP transporter solute receptor family protein
KRH_05280ProductFur family transcriptional regulator putative Fur family transcriptional regulator
KRH_05340Producthypothetical protein putative phosphatase
KRH_05350Productputative nitrite/sulfite reductase sulfite reductase
KRH_05360Productphosphoadenosine phosphosulfate reductase adenosine 5'-phosphosulfate reductase
KRH_05450Productsodium-dependent transporter NSS family transporter
KRH_05510ProductFur family transcriptional regulator putative Fur family transcriptional regulator
KRH_05520ProductRNA polymerase ECF-type sigma factor putative RNA polymerase ECF-type sigma factor
KRH_05530Productprotease HtpX homolog putative protease HtpX
KRH_05610Producthypothetical protein beta-hydroxyacyl-[acyl-carrier-protein] dehydratase subunit HadA
KRH_05620Producthypothetical protein beta-hydroxyacyl-[acyl-carrier-protein] dehydratase subunit HadB
KRH_05900Productmolybdenum cofactor biosynthesis protein A molybdenum cofactor biosynthesis protein MoaA
KRH_05920Productmolybdenum cofactor biosynthesis protein C molybdenum cofactor biosynthesis protein MoaC
KRH_05930Productputative bifunctional molybdopterin biosynthesis protein MoaE putative molybdenum cofactor biosynthesis bifunctional protein
KRH_06030ProductIclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_06070Productputative 3-oxoadipate enol-lactonase putative 3-oxoadipate enol-lactone hydrolase
KRH_06380Producthypothetical protein putative rRNA methyltransferase
KRH_06520Productglucosamine--fructose-6-phosphate aminotransferase glucosamine-6-phosphate synthase
KRH_06580Productputative aldo/keto reductase putative NADPH-dependent L-glyceraldehyde 3-phosphate reductase
KRH_06650Productdrug resistance efflux protein putative drug resistance efflux protein
KRH_06710Productiron compound ABC transporter iron compound-binding protein putative ABC transporter substrate-binding protein
KRH_06720Productiron compound ABC transporter permease protein putative ABC transporter permease protein
KRH_06730Productiron compound ABC transporter permease protein putative ABC transporter permease protein
KRH_06740Productiron compound ABC transporter ATP-binding protein putative ABC transporter ATP-binding protein
KRH_06820ProductGMP synthase GMP synthetase
KRH_06930ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_07000Productputative cobalt-zinc-cadmium efflux protein putative cation efflux protein
KRH_07010ProductArsR family transcriptional regulator putative ArsR family transcriptional regulator
KRH_07050ProductCorA family transporter putative metal ion transport protein
KRH_07130ProductRmuC family protein hypothetical protein
KRH_07140ProductNarL family two-component response regulator putative NarL family two-component response regulator
KRH_07150Producttwo-component histidine kinase putative two-component histidine kinase
KRH_07190ProductMFS transporter putative MFS transporter
KRH_07230ProductXre family DNA-binding protein putative Xre family DNA-binding protein
KRH_07250ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_07310ProductArsR family transcriptional regulator putative ArsR family transcriptional regulator
KRH_07440ProductXre family DNA-binding protein putative Xre family DNA-binding protein
KRH_07630ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_07790Productputative formate dehydrogenase iron-sulfur subunit putative formate dehydrogenase iron-sulfur protein
KRH_08240Productferredoxin 7Fe ferredoxin
KRH_08250Productaminotransferase succinyldiaminopimelate aminotransferase
KRH_08470ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_08580ProductUvrD/REP helicase family protein UvrD/Rep helicase family protein
KRH_08590ProductUvrD/REP helicase family protein UvrD/Rep helicase family protein
KRH_08620Productputative ATP-dependent DNA helicase ATP-dependent DNA helicase UvrD2
KRH_08650ProductLacI family transcriptional regulator putative LacI family transcriptional regulator
KRH_08740Productputative protease Do S1C family peptidase
KRH_08810Producttwo-component sensor histidine kinase MtrB two-component histidine kinase MtrB
KRH_08920Producttwo-component histidine kinase putative two-component histidine kinase
KRH_08980ProductUDP-galactofuranosyl transferase galactofuranosyltransferase
KRH_09360ProducttmRNA transfer-messenger RNA
KRH_09390Productputative GTPase putative ribosome small subunit-dependent GTPase A
KRH_09420ProductRNA polymerase ECF-type sigma factor RNA polymerase ECF-type sigma factor SigH
KRH_09520ProductFur family transcriptional regulator putative Fur family transcriptional regulator
KRH_09540Productputative hydrolase HIT family protein
KRH_09550ProductATP-dependent helicase HrpA ATP-dependent RNA helicase HrpA
KRH_09720Productputative glycosyltransferase galactofuranosyltransferase
KRH_09810ProductATP synthase subunit delta ATP synthase delta chain
KRH_09820ProductATP synthase subunit alpha ATP synthase alpha chain
KRH_09840ProductATP synthase subunit beta ATP synthase beta chain
KRH_09980ProductATP-dependent Clp protease adaptor protein ClpS putative ATP-dependent Clp protease adaptor protein ClpS
KRH_10150ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_10310ProductIclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_10550ProductMFS transporter putative MFS transporter
KRH_10560Productcell division protein FtsY signal recognition particle receptor
KRH_10570Productammonium transporter ammonium transporter AmtB
KRH_10580Productnitrogen regulatory protein P-II nitrogen regulatory protein PII
KRH_10720Productputative magnesium chelatase hypothetical protein
KRH_10760Product3-oxoacyl-[acyl-carrier-protein] synthase 3-oxoacyl-[acyl-carrier-protein] synthase II
KRH_10790Productmalonyl CoA-acyl carrier protein transacylase malonyl-CoA--acyl carrier protein transacylase
KRH_10800ProductCdaR family transcriptional regulator putative CdaR family transcriptional regulator
KRH_10960Productsiderophore biosynthesis protein putative siderophore biosynthesis protein
KRH_10980Productputative siderophore-interacting protein hypothetical protein
KRH_11000Productputative acyl-CoA thioesterase acyl-CoA thioesterase
KRH_11050Productribose 5-phosphate isomerase B ribose-5-phosphate isomerase B
KRH_11110ProductDSBA oxidoreductase family protein hypothetical protein
KRH_11160Productiron compound ABC transporter iron compound-binding protein putative iron-siderophore ABC transporter substrate-binding protein
KRH_11170Productiron compound ABC transporter permease protein putative iron-siderophore ABC transporter permease protein
KRH_11180Productiron compound ABC transporter permease protein putative iron-siderophore ABC transporter permease protein
KRH_11190Productiron compound ABC transporter ATP-binding protein putative iron-siderophore ABC transporter ATP-binding protein
KRH_11480Productthioesterase putative type II thioesterase
KRH_11520ProductTat-translocated enzyme family protein putative peroxidase
KRH_11530ProductMFS transporter (fragment) putative MFS transporter (fragment)
KRH_11540ProductMFS transporter (fragment) putative MFS transporter (fragment)
KRH_11660Productputative rRNA (cytosine-C(5)-)-methyltransferase putative rRNA methyltransferase
KRH_11670Productribulose-phosphate 3-epimerase ribulose-5-phosphate 3-epimerase
KRH_11800Productindole-3-glycerol phosphate synthase/tryptophan synthase beta chain indole-3-glycerol-phosphate synthase/tryptophan synthase beta chain
KRH_11830Productglutamate synthase large chain glutamate synthase large subunit
KRH_11840Productglutamate synthase small chain glutamate synthase small subunit
KRH_12010ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_12090Producthypothetical protein WhiA-like protein
KRH_12120Producttriosephosphate isomerase triose-phosphate isomerase
KRH_12250ProductSufR family transcriptional regulator putative SufR family transcriptional regulator
KRH_12490Product50S ribosomal protein L31 50S ribosomal protein L31 type B
KRH_12510ProductLytR family regulatory protein putative LytR family regulatory protein
KRH_12740ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_12820Productmenaquinol-cytochrome c reductase iron-sulfur subunit menaquinol-cytochrome c reductase iron-sulfur protein
KRH_12840Producthypothetical membrane protein putative cytochrome c oxidase subunit IV
KRH_12860Productcytochrome c oxidase subunit II precursor cytochrome c oxidase subunit II
KRH_12940ProductLytR family regulatory protein putative LytR family regulatory protein
KRH_13010Productheat-inducible transcription repressor HrcA heat-inducible transcriptional repressor HrcA
KRH_13050ProductGTP-binding protein LepA elongation factor LepA
KRH_13100ProductNADH--flavin oxidoreductase NADH-dependent flavin oxidoreductase
KRH_13250Productputative primosomal protein N' putative primosomal protein n'
KRH_13270Productputative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthase putative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
KRH_13370ProductPyrR bifunctional protein bifunctional protein PyrR
KRH_13380Productantitermination factor NusB transcription antitermination protein NusB
KRH_13550ProductMFS transporter putative MFS transporter
KRH_13600ProductGTP pyrophosphokinase GTP pyrophosphokinase/guanosine-3',5'-bis(diphosphate) 3-pyrophosphohydrolase
KRH_13630Producthypothetical protein putative protein-export membrane protein YajC
KRH_13700Productputative hydrolase HIT family protein
KRH_13760Productputative polyprenol phosphate mannosyl transferase putative polyprenol-phosphate mannosyltransferase
KRH_13800Productputative Sec-independent protein translocase protein TatA/TatE putative Sec-independent protein translocase protein TatA
KRH_13820Producthypothetical protein PafBC-homolog
KRH_13850Producthypothetical protein PafA-homolog
KRH_13860Producthypothetical protein putative Pup-homolog
KRH_13870Producthypothetical protein putative PafA-homolog
KRH_14150Productaconitate hydratase aconitase
KRH_14170Productputative amino acid transporter hypothetical membrane protein
KRH_14180Productpotassium uptake protein Trk system potassium uptake protein TrkA
KRH_14190Productpotassium uptake protein Trk system potassium uptake protein TrkA
KRH_14380ProductMFS transporter putative MFS transporter
KRH_14400Productleucine aminopeptidase aminopeptidase A
KRH_14520Productglutathione-dependent formaldehyde dehydrogenase putative glutathione-dependent formaldehyde dehydrogenase
KRH_14650Productserine O-acetyltransferase serine acetyltransferase
KRH_14730Productlipoprotein signal peptidase signal peptidase II
KRH_14900ProductS-adenosyl-methyltransferase MraW methyltransferase MraW
KRH_15030Productmycothiol reductase mycothione reductase
KRH_15060ProductMerR family transcriptional regulator putative MerR family transcriptional regulator
KRH_15080ProductMerR family transcriptional regulator putative MerR family transcriptional regulator
KRH_15100Productglycine cleavage system H protein glycine cleavage system H-protein
KRH_15110Productputative cation transporter putative Ktr system potassium uptake protein KtrB
KRH_15120Producthypothetical protein putative Ktr system potassium uptake protein KtrA
KRH_15140Productputative Na(+)/H(+) antiporter putative CPA1 family transporter
KRH_15290ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_15500Productlong-chain fatty-acid-CoA ligase long-chain fatty-acid--CoA ligase
KRH_15540Productacetylornithine/succinyldiaminopimelate aminotransferase acetylornithine aminotransferase
KRH_15860ProductXre family DNA-binding protein putative Xre family DNA-binding protein
KRH_15890ProductDNA translocase FtsK cell division protein FtsK
KRH_15950Productpolyribonucleotide nucleotidyltransferase guanosine pentaphosphate synthetase/polynucleotide phosphorylase
KRH_15980Product2,5-diketo-D-gluconic acid reductase 2,5-diketo-D-gluconate reductase B
KRH_15990Productriboflavin kinase/FMN adenylyltransferase flavokinase/FAD synthetase
KRH_16180Productsodium/solute symporter putative acetate permease
KRH_16450Productputative dihydrouridine synthase putative tRNA-dihydrouridine synthase
KRH_16510Productputative glutaryl-CoA dehydrogenase putative acyl-CoA dehydrogenase
KRH_16520ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_16630Producttwo-component histidine kinase putative two-component histidine kinase
KRH_16640ProductNarL family two-component response regulator putative NarL family two-component response regulator
KRH_16660Producthypothetical membrane protein putative ABC transporter permease protein
KRH_16720Productinositol-1-monophosphatase inositol monophosphatase
KRH_16730ProductNAD-dependent DNA ligase NAD(+)-dependent DNA ligase
KRH_16770ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_16790Productputative serine/threonine phosphatase putative serine/threonine protein phosphatase
KRH_16820Productbiotin-[acetyl-CoA-carboxylase] ligase biotin protein ligase
KRH_17030Productputative dTDP-4-dehydrorhamnose reductase putative dTDP-6-deoxy-L-lyxo-4-hexulose reductase
KRH_17040Productputative dTDP-4-dehydrorhamnose 3,5-epimerase putative dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase
KRH_17070Productputative uroporphyrinogen III synthase putative uroporphyrinogen-III synthase
KRH_17240Productribose-phosphate pyrophosphokinase phosphoribosylpyrophosphate synthase
KRH_17340ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_17440Productputative glycosyltransferase putative protein O-mannosyltransferase
KRH_17480Productputative regulatory protein WhiB WhiB family regulatory protein
KRH_17520ProductLytR family regulatory protein putative LytR family regulatory protein
KRH_17530ProductFemAB family protein hypothetical protein
KRH_17560Productfructose-1,6-bisphosphatase class II fructose 1,6-bisphosphatase class II
KRH_17580Productputative carbonic anhydrase carbonic anhydrase
KRH_17640ProductPhoH-like protein putative PhoH-like protein
KRH_17690Productmycothiol conjugate amidase Mca mycothiol S-conjugate amidase Mca
KRH_17950Product2',5' RNA ligase family protein hypothetical protein
KRH_17970Productputative exodeoxyribonuclease III putative exodeoxyribonuclease
KRH_18040Productphosphoribosylglycinamide formyltransferase glycinamide ribonucleotide transformylase
KRH_18070Productmannosyltransferase PimB mannosyltransferase MgtA
KRH_18120Producthigh-affinity choline transport protein choline transporter
KRH_18140ProductSNF2 family helicase putative helicase
KRH_18200ProductATP-dependent DNA helicase PcrA ATP-dependent DNA helicase UvrD1
KRH_18270Productiron dependent regulatory protein IdeR iron-dependent regulator IdeR
KRH_18280Productputative phosphoserine aminotransferase phosphoserine aminotransferase
KRH_18360Productribonuclease H ribonuclease HI
KRH_18470Productputative fructose-specific phosphotransferase system enzyme IIABC component putative fructose-specific phosphotransferase system enzyme II
KRH_18490ProductDeoR family transcriptional regulator putative DeoR family transcriptional regulator
KRH_18500Productputative ABC transporter putative ABC transporter permease/ATP-binding protein
KRH_18510Productputative ABC transporter putative ABC transporter permease/ATP-binding protein
KRH_18530ProductDSBA oxidoreductase family protein hypothetical protein
KRH_18570ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_18610Productputative FAD linked oxidase putative FAD-linked oxidase
KRH_18910Productputative pyrimidine-nucleoside phosphorylase putative pyrimidine nucleoside phosphorylase
KRH_19050Productphosphate transport system ATP-binding protein phosphate ABC transporter ATP-binding protein
KRH_19060Productphosphate transport system permease protein phosphate ABC transporter permease protein
KRH_19070Productphosphate transport system permease protein phosphate ABC transporter permease protein
KRH_19080Productphosphate transport system phosphate-binding protein phosphate ABC transporter phosphate-binding protein
KRH_19190Productpantoate--beta-alanine ligase pantothenate synthetase
KRH_19280Productcell division protein FtsH ATP-dependent protease FtsH
KRH_19560Productputative sulfatase hypothetical membrane protein
KRH_19570ProductDtxR family transcriptional regulator putative DtxR family transcriptional regulator
KRH_19610ProductTDT family transporter putative TDT family transporter
KRH_19620ProductLysR family transcriptional regulator putative LysR family transcriptional regulator
KRH_19770Productputative uricase putative 5-hydroxyisourate hydrolase
KRH_19800ProductIclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_19930Productputative aldo/keto reductase putative aldo-keto reductase
KRH_19970ProductXre family DNA-binding protein putative Xre family DNA-binding protein
KRH_19980ProductMFS transporter putative MFS transporter
KRH_20030ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_20050Productputative molybdopterin-guanine dinucleotide biosynthesis protein A putative molybdopterin-guanine dinucleotide biosynthesis protein MobA
KRH_20080ProductNAD(+)-dependent glutamate dehydrogenase NAD-dependent glutamate dehydrogenase
KRH_20090Productputative formate/nitrite transporter putative formate transporter
KRH_20180ProductAsnC family transcriptional regulator putative AsnC family transcriptional regulator
KRH_20190Productputative phenylalanine aminotransferase putative aromatic amino acid aminotransferase
KRH_20300ProductMFS transporter putative MFS transporter
KRH_20630Productserine/threonine phosphatase serine/threonine protein phosphatase PstP
KRH_20650Productpenicillin-binding protein penicillin-binding protein PbpA
KRH_20790ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_20860ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_20910Product5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase cobalamin-independent methionine synthase
KRH_20970ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_21040ProductMFS transporter putative MFS transporter
KRH_21090ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_21100ProductNAD(P)H-dependent FMN reductase putative NADH-dependent FMN reductase
KRH_21150ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_21210ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_21240ProductAsnC family transcriptional regulator putative AsnC family transcriptional regulator
KRH_21310ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_21490ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_21530Producttwo-component histidine kinase putative two-component histidine kinase
KRH_21540ProductNarL family two-component response regulator putative NarL family two-component response regulator
KRH_21560ProductMFS transporter putative MFS transporter
KRH_21660Productnickel-transport protein putative nickel transporter
KRH_21750ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_21780ProductNarL family two-component response regulator putative NarL family two-component response regulator
KRH_21790Producttwo-component histidine kinase putative two-component histidine kinase
KRH_21880Product3-mercaptopyruvate sulfurtransferase putative 3-mercaptopyruvate sulfurtransferase
KRH_21970ProductRNA polymerase ECF-type sigma factor putative RNA polymerase ECF-type sigma factor
KRH_22040ProductGntR family transcriptional regulator putative GntR family transcriptional regulator
KRH_22090Productsmall multidrug resistance protein multidrug efflux transporter
KRH_22100Productsmall multidrug resistance protein multidrug efflux transporter
KRH_22110ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22230Productheat shock protein Hsp20 family protein putative heat shock protein
KRH_22280ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22300ProductMFS transporter putative MFS transporter
KRH_22360Productflavin-containing amine oxidase tyramine oxidase
KRH_22370ProductAraC family transcriptional regulator putative AraC family transcriptional regulator
KRH_22380Productputative phenylacetic acid degradation protein putative thioesterase
KRH_22440Productacyltransferase putative acyltransferase
KRH_22490Productputative DNA-3-methyladenine glycosylase II putative methylated-DNA--protein-cysteine methyltransferase/3-methyladenine-DNA glycosylase II
KRH_22500Productputative methyltransferase putative methylated-DNA--protein-cysteine methyltransferase
KRH_22780ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22880ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_22900ProductTetR family transcriptional regulator putative TetR family transcriptional regulator
KRH_22930ProductIclR family transcriptional regulator putative IclR family transcriptional regulator
KRH_23000Productacetamidase/formamidase acetamidase
KRH_23250ProductMFS transporter putative MFS transporter
KRH_23260ProductMarR family transcriptional regulator putative MarR family transcriptional regulator
KRH_23270ProductCdaR family transcriptional regulator putative CdaR family transcriptional regulator
KRH_23540Producthypothetical membrane protein OxaA family protein

Category
IDoldnew
KRH_00110Category3.3 3.9
KRH_00260Category1.9 1.1
KRH_00400Category3.3 3.9
KRH_00420Category1.5 1.9
KRH_00450Category1.5 1.6
KRH_00510Category9.2 3.9
KRH_00630Category3.1 3.9
KRH_00910Category3.9 2.9
KRH_01040Category3.1 9.2
KRH_01110Category9.1 1.5
KRH_01190Category3.1 3.9
KRH_01410Category1.5 1.1
KRH_01420Category2.3 9.2
KRH_01710Category3.1 9.1
KRH_01930Category9.1 1.3
KRH_02110Category1.9 1.7
KRH_02120Category1.9 1.7
KRH_02130Category1.9 1.7
KRH_02140Category1.9 1.7
KRH_02150Category1.9 1.7
KRH_02160Category1.9 1.7
KRH_02170Category1.5 1.7
KRH_02200Category1.9 1.7
KRH_02300Category1.3 1.7
KRH_02330Category1.1 1.3
KRH_02340Category1.7 1.3
KRH_02350Category1.7 1.3
KRH_02780Category9.98 9.1
KRH_02920Category9.98 3.9
KRH_03150Category9.98 1.3
KRH_03160Category9.1 1.2
KRH_03170Category9.1 2.2
KRH_03630Category2.1 2.3
KRH_03980Category3.3 3.9
KRH_03990Category3.3 3.9
KRH_04010Category3.9 2.1
KRH_04200Category3.3 3.9
KRH_04490Category9.1 3.3
KRH_04790Category9.98 3.1
KRH_04880Category3.3 1.2
KRH_04890Category3.3 1.2
KRH_04900Category3.3 1.2
KRH_04910Category3.3 1.2
KRH_05030Category9.2 2.2
KRH_05290Category1.5 3.9
KRH_05340Category9.98 9.1
KRH_05500Category1.5 3.9
KRH_05530Category3.3 3.9
KRH_05610Category9.98 1.3
KRH_05620Category9.98 1.3
KRH_05710Category1.7 1.9
KRH_05940Category1.2 9.2
KRH_06380Category9.98 2.2
KRH_06450Category2.9 2.2
KRH_06520Category1.5 1.1
KRH_06580Category9.1 1.1
KRH_06620Category1.7 1.9
KRH_06680Category1.9 3.9
KRH_06750Category3.3 3.9
KRH_06760Category3.3 3.9
KRH_07130Category9.2 9.98
KRH_07830Category1.5 2.2
KRH_08210Category9.1 2.9
KRH_08220Category1.7 1.9
KRH_08250Category9.1 1.5
KRH_08420Category9.1 3.9
KRH_08740Category3.9 9.1
KRH_08760Category1.5 1.9
KRH_08930Category9.1 3.3
KRH_08980Category3.9 3.3
KRH_09230Category9.1 2.3
KRH_09390Category9.1 2.9
KRH_09540Category9.1 9.2
KRH_09690Category2.2 3.9
KRH_09720Category9.1 3.3
KRH_09980Category3.3 3.9
KRH_10130Category1.9 1.1
KRH_10500Category1.3 1.7
KRH_10560Category3.1 3.3
KRH_10720Category1.9 9.98
KRH_10810Category1.5 1.1
KRH_10830Category1.2 3.9
KRH_10940Category9.1 1.7
KRH_10970Category1.9 1.5
KRH_10980Category3.9 9.98
KRH_11040Category1.5 3.9
KRH_11080Category3.3 3.9
KRH_11090Category3.3 3.9
KRH_11100Category3.3 3.9
KRH_11110Category9.2 9.98
KRH_11320Category9.1 3.9
KRH_11520Category9.2 9.1
KRH_11580Category1.4 1.2
KRH_11820Category1.3 3.9
KRH_12090Category9.98 9.2
KRH_12200Category1.2 1.6
KRH_12260Category1.2 1.9
KRH_12270Category1.2 1.9
KRH_12280Category1.2 1.9
KRH_12710Category1.5 3.9
KRH_12840Category9.98 1.2
KRH_12870Category1.2 1.9
KRH_12950Category9.1 2.9
KRH_13000Category3.3 3.9
KRH_13050Category9.1 2.2
KRH_13120Category9.1 2.9
KRH_13320Category1.5 1.4
KRH_13330Category1.5 1.4
KRH_13630Category9.98 3.1
KRH_13700Category9.1 9.2
KRH_13820Category9.98 9.2
KRH_13830Category3.3 3.9
KRH_13840Category3.3 3.9
KRH_13850Category9.98 9.2
KRH_13860Category9.98 9.2
KRH_13870Category9.98 9.2
KRH_13920Category1.7 1.9
KRH_13930Category3.9 3.3
KRH_14090Category3.3 3.9
KRH_14110Category2.9 2.2
KRH_14170Category3.1 9.98
KRH_14400Category9.1 3.9
KRH_14520Category1.9 1.1
KRH_14630Category3.3 3.9
KRH_14720Category2.9 2.2
KRH_14900Category3.3 9.1
KRH_14910Category3.3 9.2
KRH_15030Category1.7 1.9
KRH_15120Category9.98 3.1
KRH_15200Category9.1 2.9
KRH_15980Category1.9 1.1
KRH_16020Category2.9 2.2
KRH_16660Category9.98 3.1
KRH_16790Category3.9 3.2
KRH_16800Category3.2 1.4
KRH_17360Category2.1 2.2
KRH_17440Category9.1 3.9
KRH_17480Category9.1 3.3
KRH_17530Category9.2 9.98
KRH_17580Category1.5 1.9
KRH_17690Category1.7 1.9
KRH_17950Category9.2 9.98
KRH_18070Category3.9 3.3
KRH_18370Category3.3 3.9
KRH_18530Category9.2 9.98
KRH_18800Category9.1 1.5
KRH_19150Category3.3 3.9
KRH_19480Category1.5 1.1
KRH_19560Category9.1 9.98
KRH_19880Category1.1 1.3
KRH_20630Category3.9 3.2
KRH_21100Category1.9 9.1
KRH_22010Category1.5 1.7
KRH_22020Category1.5 1.7
KRH_22050Category1.5 1.7
KRH_22070Category9.2 3.9
KRH_22140Category1.2 1.9
KRH_22180Category1.6 1.4
KRH_22230Category9.2 3.9
KRH_22360Category9.1 1.5
KRH_22380Category1.9 9.1
KRH_22500Category9.1 2.3
KRH_22630Category1.5 3.9
KRH_22990Category9.1 2.1
KRH_23000Category1.9 1.1
KRH_23230Category2.3 2.9
KRH_23430Category2.1 2.2
KRH_23470Category1.4 1.2
KRH_23520Category3.3 9.1
KRH_23540Category9.98 9.2

Gene
IDoldnew
KRH_00910GenehslR
KRH_01120GenepdxT pdx2
KRH_01130GenepdxS pdx1
KRH_01550GenefprA
KRH_02330Genebdh bdhA
KRH_04550GenearoD aroQ
KRH_05350GenenirA sirA
KRH_05930GenemoaE
KRH_06670GenerimI
KRH_06890GenerimJ
KRH_10770GeneacpP acpM
KRH_11660GenersmB
KRH_11710GeneribA
KRH_12490GenerpmE rpmE2
KRH_12660GenerkpK udg
KRH_13800GenetatA/tatE tatA
KRH_15950Genepnp gpsI
KRH_17480GenewhiB
KRH_17560GeneglpX fbp
KRH_17890GenemanC
KRH_18070GenepimB mgtA
KRH_18200GenepcrA uvrD1
KRH_19710Genefrk
KRH_19810GeneaceB glcB
KRH_22860GenephrB phr

Position
IDoldnew
KRH_07770Position839821..840387 839821..843204
KRH_07780Position840457..843204 Deleted
KRH_18920Position2168967..2171480 2170263..2171480

2008-03-31 2008-03-31
Release of the Kocuria rhizophila genomic sequence data
imageWe published the genomic data of Kocuria rhizophila DC2201 (NBRC 103217) including the information of DNA clones distributed from the NBRC.
This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan.