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close this sectionAspergillus oryzae RIB40 (= NBRC 100959)

close this sectionAbout this genome

Genome sequencing and analysis of Aspergillus oryzae.  nite logo
Machida M.,Asai K.,Sano M.,Tanaka T.,Kumagai T.,Terai G.,Kusumoto K.,Arima T.,Akita O.,Kashiwagi Y.,Abe K.,Gomi K.,Horiuchi H.,Kitamoto K.,Kobayashi T.,Takeuchi M.,Denning DW.,Galagan JE.,Nierman WC.,Yu J.,Archer DB.,Bennett JW.,Bhatnagar D.,Cleveland TE.,Fedorova ND.,Gotoh O.,Horikawa H.,Hosoyama A.,Ichinomiya M.,Igarashi R.,Iwashita K.,Juvvadi PR.,Kato M.,Kato Y.,Kin T.,Kokubun A.,Maeda H.,Maeyama N.,Maruyama J.,Nagasaki H.,Nakajima T.,Oda K.,Okada K.,Paulsen I.,Sakamoto K.,Sawano T.,Takahashi M.,Takase K.,Terabayashi Y.,Wortman JR.,Yamada O.,Yamagata Y.,Anazawa H.,Hata Y.,Koide Y.,Komori T.,Koyama Y.,Minetoki T.,Suharnan S.,Tanaka A.,Isono K.,Kuhara S.,Ogasawara N.,Kikuchi H.
Nature 438 (2005) 1157-61 [PMID: 16372010]  Abstract

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Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Nature 438 (2005) 1105-15 [PMID: 16372000]  Abstract

open this sectionSaccharomyces cerevisiae K7 (= NBRC 101557)

open this sectionAspergillus oryzae RIB40 -beta version- (= NBRC 100959)

close this sectionAeropyrum pernix K1T (= NBRC 100138T)

close this sectionAbout this genome

Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.  nite logo
Kawarabayasi Y.,Hino Y.,Horikawa H.,Yamazaki S.,Haikawa Y.,Jin-no K.,Takahashi M.,Sekine M.,Baba S.,Ankai A.,Kosugi H.,Hosoyama A.,Fukui S.,Nagai Y.,Nishijima K.,Nakazawa H.,Takamiya M.,Masuda S.,Funahashi T.,Tanaka T.,Kudoh Y.,Yamazaki J.,Kushida N.,Oguchi A.,Kikuchi H.
DNA Res. 6 (1999) 83-101, 145-52 [PMID: 10382966]  Abstract

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Crystal structures of tyrosyl-tRNA synthetases from Archaea.
Kuratani M.,Sakai H.,Takahashi M.,Yanagisawa T.,Kobayashi T.,Murayama K.,Chen L.,Liu ZJ.,Wang BC.,Kuroishi C.,Kuramitsu S.,Terada T.,Bessho Y.,Shirouzu M.,Sekine S.,Yokoyama S.
J. Mol. Biol. 355 (2006) 395-408 [PMID: 16325203]  Abstract
Identification of the first archaeal oligopeptide-binding protein from the hyperthermophile Aeropyrum pernix.
Palmieri G.,Casbarra A.,Fiume I.,Catara G.,Capasso A.,Marino G.,Onesti S.,Rossi M.
Extremophiles 10 (2006) 393-402 [PMID: 16636888]  Abstract
Overexpression of the genes from thermophiles in Escherichia coli by high-temperature cultivation.
Koma D.,Sawai T.,Harayama S.,Kino K.
Appl. Microbiol. Biotechnol. 73 (2006) 172-80 [PMID: 16652221]  Abstract
Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1.  nite logo
Yamazaki S.,Yamazaki J.,Nishijima K.,Otsuka R.,Mise M.,Ishikawa H.,Sasaki K.,Tago S.,Isono K.
Mol. Cell Proteomics 5 (2006) 811-23 [PMID: 16455681]  Abstract
Characterization of a whole set of tRNA molecules in an aerobic hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1.  nite logo
Yamazaki S.,Kikuchi H.,Kawarabayasi Y.
DNA Res. 12 (2005) 403-16 [PMID: 16769697]  Abstract
Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1.
Kato-Murayama M.,Bessho Y.,Shirouzu M.,Yokoyama S.
J. Mol. Biol. 348 (2005) 295-305 [PMID: 15811369]  Abstract
Crystallization and preliminary X-ray diffraction studies of a protein disulfide oxidoreductase from Aeropyrum pernix K1.
D'Ambrosio K.,De Simone G.,Pedone E.,Rossi M.,Bartolucci S.,Pedone C.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 61 (2005) 335-6 [PMID: 16511034]  Abstract
Gene expression and characterization of two 2-oxoacid:ferredoxin oxidoreductases from Aeropyrum pernix K1.
Nishizawa Y.,Yabuki T.,Fukuda E.,Wakagi T.
FEBS Lett. 579 (2005) 2319-22 [PMID: 15848165]  Abstract
Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
Murayama K.,Kato-Murayama M.,Katsura K.,Uchikubo-Kamo T.,Yamaguchi-Hirafuji M.,Kawazoe M.,Akasaka R.,Hanawa-Suetsugu K.,Hori-Takemoto C.,Terada T.,Shirouzu M.,Yokoyama S.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 61 (2005) 26-9 [PMID: 16508081]  Abstract
A novel phospholipase A2/esterase from hyperthermophilic archaeon Aeropyrum pernix K1.
Wang B.,Lu D.,Gao R.,Yang Z.,Cao S.,Feng Y.
Protein Expr. Purif. 35 (2004) 199-205 [PMID: 15135393]  Abstract
A preliminary solubility screen used to improve crystallization trials: crystallization and preliminary X-ray structure determination of Aeropyrum pernix flap endonuclease-1.
Collins BK.,Tomanicek SJ.,Lyamicheva N.,Kaiser MW.,Mueser TC.
Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 1674-8 [PMID: 15333952]  Abstract
Ancestral hemoglobins in Archaea.
Freitas TA.,Hou S.,Dioum EM.,Saito JA.,Newhouse J.,Gonzalez G.,Gilles-Gonzalez MA.,Alam M.
Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 6675-80 [PMID: 15096613]  Abstract
Bifunctional phosphoglucose/phosphomannose isomerases from the Archaea Aeropyrum pernix and Thermoplasma acidophilum constitute a novel enzyme family within the phosphoglucose isomerase superfamily.
Hansen T.,Wendorff D.,Schonheit P.
J. Biol. Chem. 279 (2004) 2262-72 [PMID: 14551194]  Abstract
Conformational changes induced by nucleotide binding in Cdc6/ORC from Aeropyrum pernix.
Singleton MR.,Morales R.,Grainge I.,Cook N.,Isupov MN.,Wigley DB.
J. Mol. Biol. 343 (2004) 547-57 [PMID: 15465044]  Abstract
Crystallization of the xeroderma pigmentosum group F endonuclease from Aeropyrum pernix.
Lally J.,Newman M.,Murray-Rust J.,Fadden A.,Kawarabayasi Y.,McDonald N.
Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 1658-61 [PMID: 15333947]  Abstract
X-ray structure of a protein-conducting channel.
Van den Berg B.,Clemons WM.,Collinson I.,Modis Y.,Hartmann E.,Harrison SC.,Rapoport TA.
Nature 427 (2004) 36-44 [PMID: 14661030]  Abstract
A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activity.
Woodson JD.,Zayas CL.,Escalante-Semerena JC.
J. Bacteriol. 185 (2003) 7193-201 [PMID: 14645280]  Abstract
A novel ADP-dependent DNA ligase from Aeropyrum pernix K1.
Jeon SJ.,Ishikawa K.
FEBS Lett. 550 (2003) 69-73 [PMID: 12935888]  Abstract
A novel extracellular subtilisin-like protease from the hyperthermophile Aeropyrum pernix K1: biochemical properties, cloning, and expression.
Catara G.,Ruggiero G.,La Cara F.,Digilio FA.,Capasso A.,Rossi M.
Extremophiles 7 (2003) 391-9 [PMID: 12908102]  Abstract
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
Mino K.,Ishikawa K.
J. Bacteriol. 185 (2003) 2277-84 [PMID: 12644499]  Abstract
Characterization of novel hexadecameric thioredoxin peroxidase from Aeropyrum pernix K1.
Jeon SJ.,Ishikawa K.
J. Biol. Chem. 278 (2003) 24174-80 [PMID: 12707274]  Abstract
Cloning, expression, and characterization of the first archaeal ATP-dependent glucokinase from aerobic hyperthermophilic archaeon Aeropyrum pernix.
Sakuraba H.,Mitani Y.,Goda S.,Kawarabayasi Y.,Ohshima T.
J. Biochem. 133 (2003) 219-24 [PMID: 12761185]  Abstract
Comparative analysis of pyruvate kinases from the hyperthermophilic archaea Archaeoglobus fulgidus, Aeropyrum pernix, and Pyrobaculum aerophilum and the hyperthermophilic bacterium Thermotoga maritima: unusual regulatory properties in hyperthermophilic archaea.
Johnsen U.,Hansen T.,Schonheit P.
J. Biol. Chem. 278 (2003) 25417-27 [PMID: 12654928]  Abstract
Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus.
Kanai A.,Oida H.,Matsuura N.,Doi H.
Biochem. J. 372 (2003) 253-61 [PMID: 12614195]  Abstract
Filling a gap in the central metabolism of archaea: prediction of a novel aconitase by comparative-genomic analysis.
Makarova KS.,Koonin EV.
FEMS Microbiol. Lett. 227 (2003) 17-23 [PMID: 14568143]  Abstract
Functional analysis of an archaebacterial voltage-dependent K+ channel.
Ruta V.,Jiang Y.,Lee A.,Chen J.,MacKinnon R.
Nature 422 (2003) 180-5 [PMID: 12629550]  Abstract
Molecular recognition of proline tRNA by prolyl-tRNA synthetase from hyperthermophilic archaeon, Aeropyrum pernix K1.
Yokozawa J.,Okamoto K.,Kawarabayasi Y.,Kuno A.,Hasegawa T.
Nucleic Acids Res. Suppl. (2003) 247-8 [PMID: 14510473]  Abstract
Open reading frame sso2387 from the archaeon Sulfolobus solfataricus encodes a polypeptide with protein-serine kinase activity.
Lower BH.,Kennelly PJ.
J. Bacteriol. 185 (2003) 3436-45 [PMID: 12754243]  Abstract
The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.
Woodson JD.,Peck RF.,Krebs MP.,Escalante-Semerena JC.
J. Bacteriol. 185 (2003) 311-6 [PMID: 12486068]  Abstract
The first crystal structure of archaeal aldolase. Unique tetrameric structure of 2-deoxy-d-ribose-5-phosphate aldolase from the hyperthermophilic archaea Aeropyrum pernix.
Sakuraba H.,Tsuge H.,Shimoya I.,Kawakami R.,Goda S.,Kawarabayasi Y.,Katunuma N.,Ago H.,Miyano M.,Ohshima T.
J. Biol. Chem. 278 (2003) 10799-806 [PMID: 12529358]  Abstract
The structure of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix.
Guy JE.,Isupov MN.,Littlechild JA.
J. Mol. Biol. 331 (2003) 1041-51 [PMID: 12927540]  Abstract
Aeropyrum pernix K1, a strictly aerobic and hyperthermophilic archaeon, has two terminal oxidases, cytochrome ba3 and cytochrome aa3.
Ishikawa R.,Ishido Y.,Tachikawa A.,Kawasaki H.,Matsuzawa H.,Wakagi T.
Arch. Microbiol. 179 (2002) 42-9 [PMID: 12471503]  Abstract
Crystal structure of a novel carboxypeptidase from the hyperthermophilic archaeon Pyrococcus furiosus.
Arndt JW.,Hao B.,Ramakrishnan V.,Cheng T.,Chan SI.,Chan MK.
Structure 10 (2002) 215-24 [PMID: 11839307]  Abstract
Crystallization and preliminary crystallographic analysis of acylamino-acid releasing enzyme from the hyperthermophilic archaeon Aeropyrum pernix.
Wang G.,Gao R.,Ding Y.,Yang H.,Cao S.,Feng Y.,Rao Z.
Acta Crystallogr. D Biol. Crystallogr. 58 (2002) 1054-5 [PMID: 12037315]  Abstract
Holliday junction-resolving enzymes from eight hyperthermophilic archaea differ in reactions with cruciform DNA.
Neef K.,Birkenbihl RP.,Kemper B.
Extremophiles 6 (2002) 359-67 [PMID: 12382111]  Abstract
Identification and characterization of thioredoxin and thioredoxin reductase from Aeropyrum pernix K1.
Jeon SJ.,Ishikawa K.
Eur. J. Biochem. 269 (2002) 5423-30 [PMID: 12423340]  Abstract
Introns in protein-coding genes in Archaea.
Watanabe Y.,Yokobori S.,Inaba T.,Yamagishi A.,Oshima T.,Kawarabayasi Y.,Kikuchi H.,Kita K.
FEBS Lett. 510 (2002) 27-30 [PMID: 11755525]  Abstract
Kinetic study of sn-glycerol-1-phosphate dehydrogenase from the aerobic hyperthermophilic archaeon, Aeropyrum pernix K1.
Han JS.,Kosugi Y.,Ishida H.,Ishikawa K.
Eur. J. Biochem. 269 (2002) 969-76 [PMID: 11846799]  Abstract
Molecular recognition of threonine tRNA by threonyl-tRNA synthetase from an extreme thermophilic archaeon, Aeropyrum pernix K1.
Nagaoka Y.,Yokozawa J.,Umehara T.,Iwaki J.,Okamoto K.,Kawarabayasi Y.,Koyama Y.,Sako Y.,Wakagi T.,Kuno A.,Hasegawa T.
Nucleic Acids Res. Suppl. (2002) 81-2 [PMID: 12903115]  Abstract
Temperature dependence of kinetic parameters for hyperthermophilic glutamate dehydrogenase from Aeropyrum pernix K1.
Bhuiya MW.,Sakuraba H.,Ohshima T.
Biosci. Biotechnol. Biochem. 66 (2002) 873-6 [PMID: 12036066]  Abstract
The first archaeal ATP-dependent glucokinase, from the hyperthermophilic crenarchaeon Aeropyrum pernix, represents a monomeric, extremely thermophilic ROK glucokinase with broad hexose specificity.
Hansen T.,Reichstein B.,Schmid R.,Schonheit P.
J. Bacteriol. 184 (2002) 5955-65 [PMID: 12374829]  Abstract
Three proliferating cell nuclear antigen-like proteins found in the hyperthermophilic archaeon Aeropyrum pernix: interactions with the two DNA polymerases.
Daimon K.,Kawarabayasi Y.,Kikuchi H.,Sako Y.,Ishino Y.
J. Bacteriol. 184 (2002) 687-94 [PMID: 11790738]  Abstract
Characterization of native glutamate dehydrogenase from an aerobic hyperthermophilic archaeon Aeropyrum pernix K1.
Helianti I.,Morita Y.,Yamamura A.,Murakami Y.,Yokoyama K.,Tamiya E.
Appl. Microbiol. Biotechnol. 56 (2001) 388-94 [PMID: 11549007]  Abstract
Cloning, expression and characterisation of a Family B ATP-dependent phosphofructokinase activity from the hyperthermophilic crenarachaeon Aeropyrum pernix.
Ronimus RS.,Kawarabayasi Y.,Kikuchi H.,Morgan HW.
FEMS Microbiol. Lett. 202 (2001) 85-90 [PMID: 11506912]  Abstract
Comparison of isocitrate dehydrogenase from three hyperthermophiles reveals differences in thermostability, cofactor specificity, oligomeric state, and phylogenetic affiliation.
Steen IH.,Madern D.,Karlström M.,Lien T.,Ladenstein R.,Birkeland NK.
J. Biol. Chem. 276 (2001) 43924-31 [PMID: 11533060]  Abstract
Purification and characterization of the first archaeal aconitase from the thermoacidophilic Sulfolobus acidocaldarius.
Uhrigshardt H.,Walden M.,John H.,Anemuller S.
Eur. J. Biochem. 268 (2001) 1760-71 [PMID: 11248696]  Abstract
Sequence, expression, and characterization of the first archaeal ATP-dependent 6-phosphofructokinase, a non-allosteric enzyme related to the phosphofructokinase-B sugar kinase family, from the hyperthermophilic crenarchaeote Aeropyrum pernix.
Hansen T.,Schonheit P.
Arch. Microbiol. 177 (2001) 62-9 [PMID: 11797046]  Abstract
The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
Hosaka H.,Yao M.,Kimura M.,Tanaka I.
J. Biochem. 130 (2001) 695-701 [PMID: 11686933]  Abstract
Characterization of a thermostable DNA glycosylase specific for U/G and T/G mismatches from the hyperthermophilic archaeon Pyrobaculum aerophilum.
Yang H.,Fitz-Gibbon S.,Marcotte EM.,Tai JH.,Hyman EC.,Miller JH.
J. Bacteriol. 182 (2000) 1272-9 [PMID: 10671447]  Abstract
Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria.
Watanabe Y.,Gray MW.
Nucleic Acids Res. 28 (2000) 2342-52 [PMID: 10871366]  Abstract
Genetic analysis of a gene cluster for cyclohexanol oxidation in Acinetobacter sp. Strain SE19 by in vitro transposition.
Cheng Q.,Thomas SM.,Kostichka K.,Valentine JR.,Nagarajan V.
J. Bacteriol. 182 (2000) 4744-51 [PMID: 10940013]  Abstract
Glutamate dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1: enzymatic characterization, identification of the encoding gene, and phylogenetic implications.
Bhuiya MW.,Sakuraba H.,Kujo C.,Nunoura-Kominato N.,Kawarabayasi Y.,Kikuchi H.,Ohshima T.
Extremophiles 4 (2000) 333-41 [PMID: 11139075]  Abstract
Novel prenyltransferase gene encoding farnesylgeranyl diphosphate synthase from a hyperthermophilic archaeon, Aeropyrum pernix. Molecularevolution with alteration in product specificity.
Tachibana A.,Yano Y.,Otani S.,Nomura N.,Sako Y.,Taniguchi M.
Eur. J. Biochem. 267 (2000) 321-8 [PMID: 10632701]  Abstract
Sulfolobus acidocaldarius inorganic pyrophosphatase: structure, thermostability, and effect of metal ion in an archael pyrophosphatase.
Leppänen VM.,Nummelin H.,Hansen T.,Lahti R.,Schäfer G.,Goldman A.
Protein Sci. 8 (1999) 1218-31 [PMID: 10386872]  Abstract
A cambialistic SOD in a strictly aerobic hyperthermophilic archaeon, Aeropyrum pernix.
Yamano S.,Sako Y.,Nomura N.,Maruyama T.
J. Biochem. 126 (1999) 218-25 [PMID: 10393342]  Abstract
Evidence for a copper-coordinated histidine-tyrosine cross-link in the active site of cytochrome oxidase.
Buse G.,Soulimane T.,Dewor M.,Meyer HE.,Bluggel M.
Protein Sci. 8 (1999) 985-90 [PMID: 10338009]  Abstract
Sequence and transcriptional studies of five clustered flagellin genes from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.
Nagahisa K.,Ezaki S.,Fujiwara S.,Imanaka T.,Takagi M.
FEMS Microbiol. Lett. 178 (1999) 183-90 [PMID: 10483738]  Abstract
The strict molybdate-dependence of glucose-degradation by the thermoacidophile Sulfolobus acidocaldarius reveals the first crenarchaeotic molybdenum containing enzyme--an aldehyde oxidoreductase.
Kardinahl S.,Schmidt CL.,Hansen T.,Anemuller S.,Petersen A.,Schafer G.
Eur. J. Biochem. 260 (1999) 540-8 [PMID: 10095793]  Abstract
The structure and evolution of the ribosomal proteins encoded in the spc operon of the archaeon (Crenarchaeota) Sulfolobus acidocaldarius.
Yang D.,Kusser I.,Kopke AK.,Koop BF.,Matheson AT.
Mol. Phylogenet. Evol. 12 (1999) 177-85 [PMID: 10381320]  Abstract
Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote.
Cann IK.,Ishino S.,Nomura N.,Sako Y.,Ishino Y.
J. Bacteriol. 181 (1999) 5984-92 [PMID: 10498710]  Abstract
Molecular characterization and postsplicing fate of three introns within the single rRNA operon of the hyperthermophilic archaeon Aeropyrum pernix K1.
Nomura N.,Sako Y.,Uchida A.
J. Bacteriol. 180 (1998) 3635-43 [PMID: 9658008]  Abstract
Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C.
Sako Y.,Nomura N.,Uchida A.,Ishida Y.,Morii H.,Koga Y.,Hoaki T.,Maruyama T.
Int. J. Syst. Bacteriol. 46 (1996) 1070-7 [PMID: 8863437]  Abstract
Glutamate-1-semialdehyde aminotransferase from Sulfolobus solfataricus.
Palmieri G.,Di Palo M.,Scaloni A.,Orru S.,Marino G.,Sannia G.
Biochem. J. 320 ( Pt 2) (1996) 541-5 [PMID: 8973563]  Abstract
Nucleotide sequence of the gene for a 74 kDa DNA polymerase from the archaeon Sulfolobus solfataricus.
Prangishvili D.,Klenk HP.
Nucleic Acids Res. 21 (1993) 2768 [PMID: 8332474]
Protein topography of Sulfolobus solfataricus ribosomes by cross-linking with 2-iminothiolane. Sso L12e, Sso L10e, and Sso L11e are neighbors.
Casiano C.,Traut RR.
J. Biol. Chem. 266 (1991) 21578-83 [PMID: 1939187]  Abstract
Purification and characterisation of an archaebacterial succinate dehydrogenase complex from the plasma membrane of the thermoacidophile Sulfolobus acidocaldarius.
Moll R.,Schafer G.
Eur. J. Biochem. 201 (1991) 593-600 [PMID: 1935955]  Abstract
Purification and properties of a thermostable fumarate hydratase from the archaeobacterium Sulfolobus solfataricus.
Puchegger S.,Redl B.,Stoffler G.
J. Gen. Microbiol. 136 (1990) 1537-41 [PMID: 2124611]  Abstract
Structure and evolution of the L11, L1, L10, and L12 equivalent ribosomal proteins in eubacteria, archaebacteria, and eucaryotes.
Ramirez C.,Shimmin LC.,Newton CH.,Matheson AT.,Dennis PP.
Can. J. Microbiol. 35 (1989) 234-44 [PMID: 2497941]  Abstract

close this sectionSulfolobus tokodaii strain 7T (= NBRC 100140T)

close this sectionAbout this genome

Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7.  nite logo
Kawarabayasi Y.,Hino Y.,Horikawa H.,Jin-no K.,Takahashi M.,Sekine M.,Baba S.,Ankai A.,Kosugi H.,Hosoyama A.,Fukui S.,Nagai Y.,Nishijima K.,Otsuka R.,Nakazawa H.,Takamiya M.,Kato Y.,Yoshizawa T.,Tanaka T.,Kudoh Y.,Yamazaki J.,Kushida N.,Oguchi A.,Aoki K.,Masuda S.,Yanagii M.,Nishimura M.,Yamagishi A.,Oshima T.,Kikuchi H.
DNA Res. 8 (2001) 123-40 [PMID: 11572479]  Abstract

close this sectionJournal

Identification of an entire set of tRNA molecules and characterization of cleavage sites of the intron-containing tRNA precursors in acidothermophilic crenarchaeon Sulfolobus tokodaii strain7.  nite logo
Yamazaki S.,Yoshinari S.,Kita K.,Watanabe Y.,Kawarabayasi Y.
Gene 489 (2011) 103-10 [PMID: 21872648]  Abstract

close this sectionMethanocella paludicola SANAET (= NBRC 101707T)

close this sectionAbout this genome

Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales.
Sakai S.,Takaki Y.,Shimamura S.,Sekine M.,Tajima T.,Kosugi H.,Ichikawa N.,Tasumi E.,Hiraki AT.,Shimizu A.,Kato Y.,Nishiko R.,Mori K.,Fujita N.,Imachi H.,Takai K.
PLoS ONE 6 (2011) e22898 [PMID: 21829548]  Abstract

close this sectionJournal

Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov.
Sakai S.,Imachi H.,Hanada S.,Ohashi A.,Harada H.,Kamagata Y.
Int. J. Syst. Evol. Microbiol. 58 (2008) 929-36 [PMID: 18398197]  Abstract
Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I.
Sakai S.,Imachi H.,Sekiguchi Y.,Ohashi A.,Harada H.,Kamagata Y.
Appl. Environ. Microbiol. 73 (2007) 4326-31 [PMID: 17483259]  Abstract
Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere.
Erkel C.,Kube M.,Reinhardt R.,Liesack W.
Science 313 (2006) 370-2 [PMID: 16857943]  Abstract
Rice Cluster I methanogens, an important group of Archaea producing greenhouse gas in soil.
Conrad R.,Erkel C.,Liesack W.
Curr. Opin. Biotechnol. 17 (2006) 262-7 [PMID: 16621512]  Abstract
Clime change 2001, the scientific basis.
Dentener F, Derwent R, Dlugokencky E, Holland E, Isaksen I, Katima J, Kirchhoff V, Matson P, Midgley P and Wang M.
Third Assessment Report of the Intergovernmental Panel on Climate Change. (2001)

close this sectionPyrococcus horikoshii OT3T (= NBRC 100139T)

close this sectionAbout this genome

Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.  nite logo
Kawarabayasi Y.,Sawada M.,Horikawa H.,Haikawa Y.,Hino Y.,Yamamoto S.,Sekine M.,Baba S.,Kosugi H.,Hosoyama A.,Nagai Y.,Sakai M.,Ogura K.,Otsuka R.,Nakazawa H.,Takamiya M.,Ohfuku Y.,Funahashi T.,Tanaka T.,Kudoh Y.,Yamazaki J.,Kushida N.,Oguchi A.,Aoki K.,Kikuchi H.
DNA Res. 5 (1998) 55-76 [PMID: 9679194]  Abstract

close this sectionJournal

Structure of a glutamate transporter homologue from Pyrococcus horikoshii.
Yernool D.,Boudker O.,Jin Y.,Gouaux E.
Nature 431 (2004) 811-8 [PMID: 15483603]  Abstract
Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.
Aramini JM.,Huang YJ.,Cort JR.,Goldsmith-Fischman S.,Xiao R.,Shih LY.,Ho CK.,Liu J.,Rost B.,Honig B.,Kennedy MA.,Acton TB.,Montelione GT.
Protein Sci. 12 (2003) 2823-30 [PMID: 14627742]  Abstract
A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure.
Ishikawa K.,Matsui I.,Payan F.,Cambillau C.,Ishida H.,Kawarabayasi Y.,Kikuchi H.,Roussel A.
Structure 10 (2002) 877-86 [PMID: 12057201]  Abstract
Active site of deblocking aminopeptidase from Pyrococcus horikoshii.
Onoe S.,Ando S.,Ataka M.,Ishikawa K.
Biochem. Biophys. Res. Commun. 290 (2002) 994-7 [PMID: 11798173]  Abstract
Crystal structure of archaeosine tRNA-guanine transglycosylase.
Ishitani R.,Nureki O.,Fukai S.,Kijimoto T.,Nameki N.,Watanabe M.,Kondo H.,Sekine M.,Okada N.,Nishimura S.,Yokoyama S.
J. Mol. Biol. 318 (2002) 665-77 [PMID: 12054814]  Abstract
Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization.
Liu L.,Iwata K.,Kita A.,Kawarabayasi Y.,Yohda M.,Miki K.
J. Mol. Biol. 319 (2002) 479-89 [PMID: 12051922]  Abstract
Crystallization and preliminary X-ray analysis of recombinant histone HPhA from the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Li T.,Ji X.,Sun F.,Gao R.,Cao S.,Feng Y.,Rao Z.
Acta Crystallogr. D Biol. Crystallogr. 58 (2002) 870-1 [PMID: 11976507]  Abstract
FK506 binding protein from the hyperthermophilic archaeon Pyrococcus horikoshii suppresses the aggregation of proteins in Escherichia coli.
Ideno A.,Furutani M.,Iba Y.,Kurosawa Y.,Maruyama T.
Appl. Environ. Microbiol. 68 (2002) 464-9 [PMID: 11823179]  Abstract
Functional convergence of two lysyl-tRNA synthetases with unrelated topologies.
Terada T.,Nureki O.,Ishitani R.,Ambrogelly A.,Ibba M.,Soll D.,Yokoyama S.
Nat. Struct. Biol. 9 (2002) 257-62 [PMID: 11887185]  Abstract
Hyperthermostable endoglucanase from Pyrococcus horikoshii.
Ando S.,Ishida H.,Kosugi Y.,Ishikawa K.
Appl. Environ. Microbiol. 68 (2002) 430-3 [PMID: 11772658]  Abstract
Pyrococcus prefoldin stabilizes protein-folding intermediates and transfers them to chaperonins for correct folding.
Okochi M.,Yoshida T.,Maruyama T.,Kawarabayasi Y.,Kikuchi H.,Yohda M.
Biochem. Biophys. Res. Commun. 291 (2002) 769-74 [PMID: 11866431]  Abstract
Substrate specificity engineering of beta-mannosidase and beta-glucosidase from Pyrococcus by exchange of unique active site residues.
Kaper T.,van Heusden HH.,van Loo B.,Vasella A.,van der Oost J.,de Vos WM.
Biochemistry 41 (2002) 4147-55 [PMID: 11900558]  Abstract
Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii.
Du X.,Wang W.,Kim R.,Yakota H.,Nguyen H.,Kim SH.
Biochemistry 40 (2001) 14166-72 [PMID: 11714269]  Abstract
Crystallization and preliminary X-ray analysis of a DNA primase from hyperthermophilic archaeon Pyrococcus horikoshii.
Ito N.,Nureki O.,Shirouzu M.,Yokoyama S.,Hanaoka F.
J. Biochem. 130 (2001) 727-30 [PMID: 11726270]  Abstract
Crystallization and preliminary X-ray analysis of aspartate racemase from Pyrococcus horikoshii OT3.
Liu L.,Iwata K.,Kawarabayasi Y.,Kikuchi H.,Kita A.,Yohda M.,Miki K.
Acta Crystallogr. D Biol. Crystallogr. 57 (2001) 1674-6 [PMID: 11679741]  Abstract
Crystallization and preliminary X-ray analysis of the archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii.
Ishitani R.,Nureki O.,Kijimoto T.,Watanabe M.,Kondo H.,Nameki N.,Okada N.,Nishimura S.,Yokoyama S.
Acta Crystallogr. D Biol. Crystallogr. 57 (2001) 1659-62 [PMID: 11679736]  Abstract
Invariant Asp-1122 and Asp-1124 are essential residues for polymerization catalysis of family D DNA polymerase from Pyrococcus horikoshii.
Shen Y.,Musti K.,Hiramoto M.,Kikuchi H.,Kawarabayashi Y.,Matsui I.
J. Biol. Chem. 276 (2001) 27376-83 [PMID: 11319225]  Abstract
Novel bifunctional hyperthermostable carboxypeptidase/aminoacylase from Pyrococcus horikoshii OT3.  nite logo
Ishikawa K.,Ishida H.,Matsui I.,Kawarabayasi Y.,Kikuchi H.
Appl. Environ. Microbiol. 67 (2001) 673-9 [PMID: 11157230]  Abstract
Pathway for the synthesis of mannosylglycerate in the hyperthermophilic archaeon Pyrococcus horikoshii. Biochemical and genetic characterization of key enzymes.
Empadinhas N.,Marugg JD.,Borges N.,Santos H.,da Costa MS.
J. Biol. Chem. 276 (2001) 43580-8 [PMID: 11562374]  Abstract
Temperature dependence of the enzyme-substrate recognition mechanism.
Ura H.,Harata K.,Matsui I.,Kuramitsu S.
J. Biochem. 129 (2001) 173-8 [PMID: 11134972]  Abstract
The MinD protein from the hyperthermophilic archaeon Pyrococcus horikoshii: crystallization and preliminary X-ray analysis.
Sakai N.,Itou H.,Watanabe N.,Yao M.,Tanaka I.
Acta Crystallogr. D Biol. Crystallogr. 57 (2001) 896-7 [PMID: 11375522]  Abstract
The novel function of a short region K253xRxxxD259 conserved in the exonuclease domain of hyperthermostable DNA polymerase I from Pyrococcus horikoshii.
Zheng R.,Matsui E.,Shen Y.,Musti KV.,Feng Y.,Darnis S.,Kawarabayasi Y.,Kikuchi H.,Harata K.,Matsui I.
Extremophiles 5 (2001) 111-7 [PMID: 11354454]  Abstract
The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
Hosaka H.,Yao M.,Kimura M.,Tanaka I.
J. Biochem. 130 (2001) 695-701 [PMID: 11686933]  Abstract
The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Sakai N.,Yao M.,Itou H.,Watanabe N.,Yumoto F.,Tanokura M.,Tanaka I.
Structure 9 (2001) 817-26 [PMID: 11566131]  Abstract
tRNA recognition of tRNA-guanine transglycosylase from a hyperthermophilic archaeon, Pyrococcus horikoshii.
Watanabe M.,Nameki N.,Matsuo-Takasaki M.,Nishimura S.,Okada N.
J. Biol. Chem. 276 (2001) 2387-94 [PMID: 11060284]  Abstract
Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution.
Du X.,Choi IG.,Kim R.,Wang W.,Jancarik J.,Yokota H.,Kim SH.
Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 14079-84 [PMID: 11114201]  Abstract
Novel substrate specificity of a membrane-bound beta-glycosidase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Matsui I.,Sakai Y.,Matsui E.,Kikuchi H.,Kawarabayasi Y.,Honda K.
FEBS Lett. 467 (2000) 195-200 [PMID: 10675537]  Abstract
The molecular structure of hyperthermostable aromatic aminotransferase with novel substrate specificity from Pyrococcus horikoshii.
Matsui I.,Matsui E.,Sakai Y.,Kikuchi H.,Kawarabayasi Y.,Ura H.,Kawaguchi S.,Kuramitsu S.,Harata K.
J. Biol. Chem. 275 (2000) 4871-9 [PMID: 10671523]  Abstract
Thermostable aminopeptidase from Pyrococcus horikoshii.
Ando S.,Ishikawa K.,Ishida H.,Kawarabayasi Y.,Kikuchi H.,Kosugi Y.
FEBS Lett. 447 (1999) 25-8 [PMID: 10218575]  Abstract
Thermostable flap endonuclease from the archaeon, Pyrococcus horikoshii, cleaves the replication fork-like structure endo/exonucleolytically.
Matsui E.,Kawasaki S.,Ishida H.,Ishikawa K.,Kosugi Y.,Kikuchi H.,Kawarabayashi Y.,Matsui I.
J. Biol. Chem. 274 (1999) 18297-309 [PMID: 10373433]  Abstract
Acylamino acid-releasing enzyme from the thermophilic archaeon Pyrococcus horikoshii.
Ishikawa K.,Ishida H.,Koyama Y.,Kawarabayasi Y.,Kawahara J.,Matsui E.,Matsui I.
J. Biol. Chem. 273 (1998) 17726-31 [PMID: 9651372]  Abstract

close this sectionKitasatospora setae NBRC 14216T

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Genome sequence of Kitasatospora setae NBRC 14216T; An evolutionary snapshot of the family Streptomycetaceae.  nite logo
Ichikawa, N., Oguchi, A., Ikeda, H., Ishikawa, J., Kitani, S., Watanabe, Y., Nakamura, S., Katano, Y., Kishi, E., Sasagawa, M., Ankai, A., Fukui, S., Hashimoto, Y., Kamata, S., Otoguro, M., Tanikawa, S., Nihira, T., Horinouchi, S., Ohnishi, Y., Hayakawa, M., Kuzuyama, T., Arisawa, A., Nomoto, F., Miura, H., Takahashi, Y., Fujita, N.
DNA research   Abstract  Comment

close this sectionRhodococcus opacus B4 (= NBRC 108011)

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Utilization of hydrophobic bacterium Rhodococcus opacus B-4 as whole-cell catalyst in anhydrous organic solvents.
Yamashita S.,Satoi M.,Iwasa Y.,Honda K.,Sameshima Y.,Omasa T.,Kato J.,Ohtake H.
Appl. Microbiol. Biotechnol. 74 (2007) 761-7 [PMID: 17123076]  Abstract
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.
McLeod MP.,Warren RL.,Hsiao WW.,Araki N.,Myhre M.,Fernandes C.,Miyazawa D.,Wong W.,Lillquist AL.,Wang D.,Dosanjh M.,Hara H.,Petrescu A.,Morin RD.,Yang G.,Stott JM.,Schein JE.,Shin H.,Smailus D.,Siddiqui AS.,Marra MA.,Jones SJ.,Holt R.,Brinkman FS.,Miyauchi K.,Fukuda M.,Davies JE.,Mohn WW.,Eltis LD.
Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 15582-7 [PMID: 17030794]  Abstract
Isolation and characterization of benzene-tolerant Rhodococcus opacus strains.
Na KS.,Kuroda A.,Takiguchi N.,Ikeda T.,Ohtake H.,Kato J.
J. Biosci. Bioeng. 99 (2005) 378-82 [PMID: 16233805]  Abstract

close this sectionRhodococcus erythropolis PR4 (= NBRC 100887)

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Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.
Sekine M.,Tanikawa S.,Omata S.,Saito M.,Fujisawa T.,Tsukatani N.,Tajima T.,Sekigawa T.,Kosugi H.,Matsuo Y.,Nishiko R.,Imamura K.,Ito M.,Narita H.,Tago S.,Fujita N.,Harayama S.
Environ. Microbiol. 8 (2006) 334-46 [PMID: 16423019]  Abstract

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A comparison of various methods to predict bacterial predilection for organic solvents used as reaction media.
Hamada T.,Sameshima Y.,Honda K.,Omasa T.,Kato J.,Ohtake H.
J. Biosci. Bioeng. 106 (2008) 357-62 [PMID: 19000611]  Abstract
Structural analysis of an acidic, fatty acid ester-bonded extracellular polysaccharide produced by a pristane-assimilating marine bacterium, Rhodococcus erythropolis PR4.
Urai M.,Yoshizaki H.,Anzai H.,Ogihara J.,Iwabuchi N.,Harayama S.,Sunairi M.,Nakajima M.
Carbohydr. Res. 342 (2007) 933-42 [PMID: 17316581]  Abstract
Structural analysis of mucoidan, an acidic extracellular polysaccharide produced by a pristane-assimilating marine bacterium, Rhodococcus erythropolis PR4.
Urai M.,Yoshizaki H.,Anzai H.,Ogihara J.,Iwabuchi N.,Harayama S.,Sunairi M.,Nakajima M.
Carbohydr. Res. 342 (2007) 927-32 [PMID: 17316584]  Abstract
Characterization of four Rhodococcus alcohol dehydrogenase genes responsible for the oxidation of aromatic alcohols.
Peng X.,Taki H.,Komukai S.,Sekine M.,Kanoh K.,Kasai H.,Choi SK.,Omata S.,Tanikawa S.,Harayama S.,Misawa N.
Appl. Microbiol. Biotechnol. 71 (2006) 824-32 [PMID: 16292529]  Abstract
Construction of bacterial consortia that degrade Arabian light crude oil.
Komukai-Nakamura S., Sugiura K., Yamauchi-Inomata Y., Toki H., Venkateswaran K., Yamamoto S., Tanaka H., Harayama H.
  Abstract

close this sectionKocuria rhizophila DC2201 (= NBRC 103217)

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Complete genome sequence of the soil actinomycete Kocuria rhizophila.  nite logo
Takarada H.,Sekine M.,Kosugi H.,Matsuo Y.,Fujisawa T.,Omata S.,Kishi E.,Shimizu A.,Tsukatani N.,Tanikawa S.,Fujita N.,Harayama S.
J. Bacteriol. 190 (2008) 4139-46 [PMID: 18408034]  Abstract

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The cell structural properties of Kocuria rhizophila for aliphatic alcohol exposure.
Fujita K., Hagishita T., Kurita S., Kawakura Y., Kobayashi Y., Matsuyama A., Iwahashi H.
Enzyme Microb. Tech. 39 (2006) 511-518  Abstract
Reclassification of ATCC 9341 from Micrococcus luteus to Kocuria rhizophila.
Tang JS.,Gillevet PM.
Int. J. Syst. Evol. Microbiol. 53 (2003) 995-7 [PMID: 12892116]  Abstract
Kocuria palustris sp. nov. and Kocuria rhizophila sp. nov., isolated from the rhizoplane of the narrow-leaved cattail (Typha angustifolia).
Kovacs, G., J. Burghardt, S. Pradella, P. Schumann, E. Stackebrandt, and K. Marialigeti.
Int. J. Syst. Bacteriol. 49 Pt 1 (1999) 167-73 [PMID: 10028258]  Abstract
Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend.
Stackebrandt E.,Koch C.,Gvozdiak O.,Schumann P.
Int. J. Syst. Bacteriol. 45 (1995) 682-92 [PMID: 7547287]  Abstract

close this sectionActinoplanes missouriensis NBRC 102363T

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Complete genome sequence of the motile actinomycete Actinoplanes missouriensis 431(T) (= NBRC 102363(T)).
Yamamura H.,Ohnishi Y.,Ishikawa J.,Ichikawa N.,Ikeda H.,Sekine M.,Harada T.,Horinouchi S.,Otoguro M.,Tamura T.,Suzuki K.,Hoshino Y.,Arisawa A.,Nakagawa Y.,Fujita N.,Hayakawa M.
Stand Genomic Sci 7 (2012) 294-303 [PMID: 23407331]  Abstract

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Characterization of Actinoplanes missouriensis spore flagella.
Uchida K.,Jang MS.,Ohnishi Y.,Horinouchi S.,Hayakawa M.,Fujita N.,Aizawa S.
Appl. Environ. Microbiol. 77 (2011) 2559-62 [PMID: 21296949]  Abstract
Characterization of the biosynthesis gene cluster for alkyl-O-dihydrogeranyl-methoxyhydroquinones in Actinoplanes missouriensis.
Awakawa T.,Fujita N.,Hayakawa M.,Ohnishi Y.,Horinouchi S.
Chembiochem 12 (2011) 439-48 [PMID: 21264995]  Abstract
Some new genera and species of the Actinoplanaceae.
Couch, J.N.
J. Elisha Mitchell Sci. Soc. 79 (1963) 53-70

close this sectionMicrolunatus phosphovorus NM-1T (= NBRC 101784T)

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Accumulation of polyhydroxyalkanoates by Microlunatus phosphovorus under various growth conditions.
Akar A.,Akkaya EU.,Yesiladali SK.,Celikyilmaz G.,Cokgor EU.,Tamerler C.,Orhon D.,Cakar ZP.
J. Ind. Microbiol. Biotechnol. 33 (2006) 215-20 [PMID: 15660231]  Abstract
Microlunatus phosphovorus gen. nov., sp. nov., a new gram-positive polyphosphate-accumulating bacterium isolated from activated sludge.
Nakamura K.,Hiraishi A.,Yoshimi Y.,Kawaharasaki M.,Masuda K.,Kamagata Y.
Int. J. Syst. Bacteriol. 45 (1995) 17-22 [PMID: 7857797]  Abstract

close this sectionCorynebacterium efficiens YS-314T (= NBRC 100395T)

close this sectionAbout this genome

Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.
Nishio Y.,Nakamura Y.,Kawarabayasi Y.,Usuda Y.,Kimura E.,Sugimoto S.,Matsui K.,Yamagishi A.,Kikuchi H.,Ikeo K.,Gojobori T.
Genome Res. 13 (2003) 1572-9 [PMID: 12840036]  Abstract

close this sectionJournal

Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level.
Nishio Y.,Nakamura Y.,Usuda Y.,Sugimoto S.,Matsui K.,Kawarabayasi Y.,Kikuchi H.,Gojobori T.,Ikeo K.
Mol. Biol. Evol. 21 (2004) 1683-91 [PMID: 15163767]  Abstract
The genome stability in Corynebacterium species due to lack of the recombinational repair system.
Nakamura Y.,Nishio Y.,Ikeo K.,Gojobori T.
Gene 317 (2003) 149-55 [PMID: 14604803]  Abstract
Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables.
Fudou R.,Jojima Y.,Seto A.,Yamada K.,Kimura E.,Nakamatsu T.,Hiraishi A.,Yamanaka S.
Int. J. Syst. Evol. Microbiol. 52 (2002) 1127-31 [PMID: 12148616]  Abstract

close this sectionStreptomyces avermitilis MA-4680T (= NBRC 14893T)

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Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.
Ikeda H.,Ishikawa J.,Hanamoto A.,Shinose M.,Kikuchi H.,Shiba T.,Sakaki Y.,Hattori M.,Omura S.
Nat. Biotechnol. 21 (2003) 526-31 [PMID: 12692562]  Abstract
The Streptomyces genome--be prepared!
Hopwood DA.
Nat. Biotechnol. 21 (2003) 505-6 [PMID: 12721573]
Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.
Omura S.,Ikeda H.,Ishikawa J.,Hanamoto A.,Takahashi C.,Shinose M.,Takahashi Y.,Horikawa H.,Nakazawa H.,Osonoe T.,Kikuchi H.,Shiba T.,Sakaki Y.,Hattori M.
Proc. Natl. Acad. Sci. U.S.A. 98 (2001) 12215-20 [PMID: 11572948]  Abstract

close this sectionCaldisericum exile AZM16c01T (= NBRC 104410T)

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Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov.  nite logo
Mori K.,Yamaguchi K.,Sakiyama Y.,Urabe T.,Suzuki K.
Int. J. Syst. Evol. Microbiol. 59 (2009) 2894-8 [PMID: 19628600]  Abstract
First cultivation and ecological investigation of a bacterium affiliated with the candidate phylum OP5 from hot springs.
Mori K.,Sunamura M.,Yanagawa K.,Ishibashi J.,Miyoshi Y.,Iino T.,Suzuki K.,Urabe T.
Appl. Environ. Microbiol. 74 (2008) 6223-9 [PMID: 18776034]  Abstract

close this sectionAnaerolinea thermophila UNI-1T (= NBRC 100420T)

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Characterization of filamentous bacteria, belonging to candidate phylum KSB3, that are associated with bulking in methanogenic granular sludges.
Yamada T.,Yamauchi T.,Shiraishi K.,Hugenholtz P.,Ohashi A.,Harada H.,Kamagata Y.,Nakamura K.,Sekiguchi Y.
ISME J 1 (2007) 246-55 [PMID: 18043635]  Abstract
Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level.
Sekiguchi Y.,Yamada T.,Hanada S.,Ohashi A.,Harada H.,Kamagata Y.
Int. J. Syst. Evol. Microbiol. 53 (2003) 1843-51 [PMID: 14657113]  Abstract
In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I.
Sekiguchi Y.,Takahashi H.,Kamagata Y.,Ohashi A.,Harada H.
Appl. Environ. Microbiol. 67 (2001) 5740-9 [PMID: 11722931]  Abstract
Syntrophothermus lipocalidus gen. nov., sp. nov., a novel thermophilic, syntrophic, fatty-acid-oxidizing anaerobe which utilizes isobutyrate.
Sekiguchi Y.,Kamagata Y.,Nakamura K.,Ohashi A.,Harada H.
Int. J. Syst. Evol. Microbiol. 50 Pt 2 (2000) 771-9 [PMID: 10758888]  Abstract

close this sectionArthrospira platensis NIES-39

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Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.
Fujisawa T.,Narikawa R.,Okamoto S.,Ehira S.,Yoshimura H.,Suzuki I.,Masuda T.,Mochimaru M.,Takaichi S.,Awai K.,Sekine M.,Horikawa H.,Yashiro I.,Omata S.,Takarada H.,Katano Y.,Kosugi H.,Tanikawa S.,Ohmori K.,Sato N.,Ikeuchi M.,Fujita N.,Ohmori M.
DNA Res. 17 (2010) 85-103 [PMID: 20203057]  Abstract

close this sectionDeferribacter desulfuricans SSM1T (= NBRC 101012T)

close this sectionAbout this genome

Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1.
Takaki Y.,Shimamura S.,Nakagawa S.,Fukuhara Y.,Horikawa H.,Ankai A.,Harada T.,Hosoyama A.,Oguchi A.,Fukui S.,Fujita N.,Takami H.,Takai K.
DNA Res. 17 (2010) 123-37 [PMID: 20189949]  Abstract

close this sectionJournal

Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent.
Takai K.,Kobayashi H.,Nealson KH.,Horikoshi K.
Int. J. Syst. Evol. Microbiol. 53 (2003) 839-46 [PMID: 12807210]  Abstract
Evidence for the presence of thermophilic Fe(III)-reducing microorganisms in deep-sea hydrothermal vents at 13 degrees N (East Pacific Rise).
Slobodkin A.,Campbell B.,Cary SC.,Bonch-Osmolovskaya E.,Jeanthon C.
FEMS Microbiol. Ecol. 36 (2001) 235-243 [PMID: 11451528]  Abstract

close this sectionStaphylococcus haemolyticus JCSC1435

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Whole-genome sequencing of Staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species.
Takeuchi F.,Watanabe S.,Baba T.,Yuzawa H.,Ito T.,Morimoto Y.,Kuroda M.,Cui L.,Takahashi M.,Ankai A.,Baba S.,Fukui S.,Lee JC.,Hiramatsu K.
J. Bacteriol. 187 (2005) 7292-308 [PMID: 16237012]  Abstract

close this sectionJournal

Precise excision and self-integration of a composite transposon as a model for spontaneous large-scale chromosome inversion/deletion of the Staphylococcus haemolyticus clinical strain JCSC1435.
Watanabe S.,Ito T.,Morimoto Y.,Takeuchi F.,Hiramatsu K.
J. Bacteriol. 189 (2007) 2921-5 [PMID: 17237177]  Abstract

close this sectionStaphylococcus aureus MW2

close this sectionAbout this genome

Genome and virulence determinants of high virulence community-acquired MRSA.
Baba T.,Takeuchi F.,Kuroda M.,Yuzawa H.,Aoki K.,Oguchi A.,Nagai Y.,Iwama N.,Asano K.,Naimi T.,Kuroda H.,Cui L.,Yamamoto K.,Hiramatsu K.
Lancet 359 (2002) 1819-27 [PMID: 12044378]  Abstract

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Requirement of Staphylococcus aureus ATP-binding cassette-ATPase FhuC for iron-restricted growth and evidence that it functions with more than one iron transporter.
Speziali CD.,Dale SE.,Henderson JA.,Vines ED.,Heinrichs DE.
J. Bacteriol. 188 (2006) 2048-55 [PMID: 16513734]  Abstract
Role of siderophore biosynthesis in virulence of Staphylococcus aureus: identification and characterization of genes involved in production of a siderophore.
Dale SE.,Doherty-Kirby A.,Lajoie G.,Heinrichs DE.
Infect. Immun. 72 (2004) 29-37 [PMID: 14688077]  Abstract
Identification and characterization of fhuD1 and fhuD2, two genes involved in iron-hydroxamate uptake in Staphylococcus aureus.
Sebulsky MT.,Heinrichs DE.
J. Bacteriol. 183 (2001) 4994-5000 [PMID: 11489851]  Abstract
Identification and characterization of a membrane permease involved in iron-hydroxamate transport in Staphylococcus aureus.
Sebulsky MT.,Hohnstein D.,Hunter MD.,Heinrichs DE.
J. Bacteriol. 182 (2000) 4394-400 [PMID: 10913070]  Abstract

close this sectionStaphylococcus aureus N315

close this sectionAbout this genome

Whole genome sequencing of meticillin-resistant Staphylococcus aureus.
Kuroda M.,Ohta T.,Uchiyama I.,Baba T.,Yuzawa H.,Kobayashi I.,Cui L.,Oguchi A.,Aoki K.,Nagai Y.,Lian J.,Ito T.,Kanamori M.,Matsumaru H.,Maruyama A.,Murakami H.,Hosoyama A.,Mizutani-Ui Y.,Takahashi NK.,Sawano T.,Inoue R.,Kaito C.,Sekimizu K.,Hirakawa H.,Kuhara S.,Goto S.,Yabuzaki J.,Kanehisa M.,Yamashita A.,Oshima K.,Furuya K.,Yoshino C.,Shiba T.,Hattori M.,Ogasawara N.,Hayashi H.,Hiramatsu K.
Lancet 357 (2001) 1225-40 [PMID: 11418146]  Abstract

close this sectionJournal

Requirement of Staphylococcus aureus ATP-binding cassette-ATPase FhuC for iron-restricted growth and evidence that it functions with more than one iron transporter.
Speziali CD.,Dale SE.,Henderson JA.,Vinés ED.,Heinrichs DE.
J. Bacteriol. 188 (2006) 2048-55 [PMID: 16513734]  Abstract
Nucleotide substitutions in Staphylococcus aureus strains, Mu50, Mu3, and N315.
Ohta T.,Hirakawa H.,Morikawa K.,Maruyama A.,Inose Y.,Yamashita A.,Oshima K.,Kuroda M.,Hattori M.,Hiramatsu K.,Kuhara S.,Hayashi H.
DNA Res. 11 (2004) 51-6 [PMID: 15141945]  Abstract
Role of siderophore biosynthesis in virulence of Staphylococcus aureus: identification and characterization of genes involved in production of a siderophore.
Dale SE.,Doherty-Kirby A.,Lajoie G.,Heinrichs DE.
Infect. Immun. 72 (2004) 29-37 [PMID: 14688077]  Abstract
Identification and characterization of fhuD1 and fhuD2, two genes involved in iron-hydroxamate uptake in Staphylococcus aureus.
Sebulsky MT.,Heinrichs DE.
J. Bacteriol. 183 (2001) 4994-5000 [PMID: 11489851]  Abstract
Identification and characterization of a membrane permease involved in iron-hydroxamate transport in Staphylococcus aureus.
Sebulsky MT.,Hohnstein D.,Hunter MD.,Heinrichs DE.
J. Bacteriol. 182 (2000) 4394-400 [PMID: 10913070]  Abstract

close this sectionBrevibacillus brevis NBRC 100599

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Secretion of human interleukin-2 in biologically active form by Bacillus brevis directly into culture medium.
Takimura Y.,Kato M.,Ohta T.,Yamagata H.,Udaka S.
Biosci. Biotechnol. Biochem. 61 (1997) 1858-61 [PMID: 9404065]  Abstract
High-level expression of Bacillus thuringiensis phosphatidylinositol-specific phospholipase C by the Bacillus brevis host-vector system.
Kobayashi T.,Tamura H.,Taguchi R.,Udaka S.,Ikezawa H.
Jpn. J. Med. Sci. Biol. 49 (1996) 103-12 [PMID: 8950642]  Abstract
Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov.
Shida O.,Takagi H.,Kadowaki K.,Komagata K.
Int. J. Syst. Bacteriol. 46 (1996) 939-46 [PMID: 8863420]  Abstract
Bacillus brevis Migula 1900 taxonomy: reassociation and base composition of DNA.
Nakamura LK.
Int. J. Syst. Bacteriol. 41 (1991) 510-5 [PMID: 1742197]  Abstract
Use of Bacillus brevis for efficient synthesis and secretion of human epidermal growth factor.
Yamagata H.,Nakahama K.,Suzuki Y.,Kakinuma A.,Tsukagoshi N.,Udaka S.
Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 3589-93 [PMID: 2786200]  Abstract
Morphological alterations of cell wall concomitant with protein release in a protein-producing bacterium, Bacillus brevis 47.
Yamada H.,Tsukagoshi N.,Udaka S.
J. Bacteriol. 148 (1981) 322-32 [PMID: 7287624]  Abstract
Screening for Protein-producing Bacteria.
Udaka S.
Agric. Biol. Chem. 40 (1975) 523-528  Abstract

close this sectionTetragenococcus halophilus NBRC 12172

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The phylogeny of Aerococcus and Pediococcus as determined by 16S rRNA sequence analysis: description of Tetragenococcus gen. nov.
Collins MD.,Williams AM.,Wallbanks S.
FEMS Microbiol. Lett. 58 (1990) 255-62 [PMID: 2227360]  Abstract
Studies on the activities of bacteria in soy sauce brewing. Part III. Taxonomic studies on Pediococcus soyae nov. sp., the soy sauce lactic acid bacteria.
Sakaguchi, K.
Bull. Agric. Chem. Soc. Jpn. 22 (1958) 353-362

close this sectionOscillibacter valericigenes Sjm18-20T (= NBRC 101213T)

close this sectionAbout this genome

Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (= NBRC 101213T)  nite logo
Katano, Y., Fujinami, S., Kawakoshi, A., Nakazawa, H., Oji, S., Iino, T., Oguchi, A., Ankai, A., Fukui, S., Terui, Y., Kamata, S., Harada, T., Tanikawa, S., Suzuki, K. and Fujita, N.
Standards in Genomic Science

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Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam.  nite logo
Iino T.,Mori K.,Tanaka K.,Suzuki K.,Harayama S.
Int. J. Syst. Evol. Microbiol. 57 (2007) 1840-5 [PMID: 17684268]  Abstract

close this sectionGemmatimonas aurantiaca T-27T (= NBRC 100505T)

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Carotenoids of Gemmatimonas aurantiaca (Gemmatimonadetes): identification of a novel carotenoid, deoxyoscillol 2-rhamnoside, and proposed biosynthetic pathway of oscillol 2,2'-dirhamnoside.
Takaichi S.,Maoka T.,Takasaki K.,Hanada S.
Microbiology (Reading, Engl.) 156 (2010) 757-63 [PMID: 19959572]  Abstract
Vertical transmission of a phylogenetically complex microbial consortium in the viviparous sponge Ircinia felix.
Schmitt S.,Weisz JB.,Lindquist N.,Hentschel U.
Appl. Environ. Microbiol. 73 (2007) 2067-78 [PMID: 17277226]  Abstract
Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.
Davis KE.,Joseph SJ.,Janssen PH.
Appl. Environ. Microbiol. 71 (2005) 826-34 [PMID: 15691937]  Abstract
Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov.
Zhang H.,Sekiguchi Y.,Hanada S.,Hugenholtz P.,Kim H.,Kamagata Y.,Nakamura K.
Int. J. Syst. Evol. Microbiol. 53 (2003) 1155-63 [PMID: 12892144]  Abstract
Laboratory cultivation of widespread and previously uncultured soil bacteria.
Joseph SJ.,Hugenholtz P.,Sangwan P.,Osborne CA.,Janssen PH.
Appl. Environ. Microbiol. 69 (2003) 7210-5 [PMID: 14660368]  Abstract

close this sectionAcetobacter pasteurianus IFO 3283-32 (= NBRC 105190)

close this sectionAbout this genome

Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus.
Azuma Y.,Hosoyama A.,Matsutani M.,Furuya N.,Horikawa H.,Harada T.,Hirakawa H.,Kuhara S.,Matsushita K.,Fujita N.,Shirai M.
Nucleic Acids Res. 37 (2009) 5768-83 [PMID: 19638423]  Abstract

open this sectionAcidiphilium multivorum AIU301 (= NBRC 100883)

close this sectionSphingobium japonicum UT26S (= NBRC 101211)

close this sectionAbout this genome

Complete genome sequence of the representative {gamma}-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.
Nagata Y.,Ohtsubo Y.,Endo R.,Ichikawa N.,Ankai A.,Oguchi A.,Fukui S.,Fujita N.,Tsuda M.
J Bacteriol (2010) [PMID: 20817768]  Abstract

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Aerobic degradation of lindane (gamma-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis.
Nagata Y.,Endo R.,Ito M.,Ohtsubo Y.,Tsuda M.
Appl. Microbiol. Biotechnol. 76 (2007) 741-52 [PMID: 17634937]  Abstract
Identification and characterization of genes encoding a putative ABC-type transporter essential for utilization of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26.
Endo R.,Ohtsubo Y.,Tsuda M.,Nagata Y.
J. Bacteriol. 189 (2007) 3712-20 [PMID: 17369300]  Abstract
Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov.
Pal R.,Bala S.,Dadhwal M.,Kumar M.,Dhingra G.,Prakash O.,Prabagaran SR.,Shivaji S.,Cullum J.,Holliger C.,Lal R.
Int. J. Syst. Evol. Microbiol. 55 (2005) 1965-72 [PMID: 16166696]  Abstract
Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26.
Endo R.,Kamakura M.,Miyauchi K.,Fukuda M.,Ohtsubo Y.,Tsuda M.,Nagata Y.
J. Bacteriol. 187 (2005) 847-53 [PMID: 15659662]  Abstract
Dehydrochlorination of γ-Hexachlorocyclohexane (γ-BHC) by γ-BHC-Assimilating Pseudomonas paucimobilis
Imai,R, Nagata Y, Senoo K, Wada H, Fukuda M, Takagi M and Yano K.
Agric. Biol. Chem. 53 (1989) 2015-2017

close this sectionSphingobium sp. SYK-6 (= NBRC 103272)

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Degradation of 3-O-methylgallate in Sphingomonas paucimobilis SYK-6 by pathways involving protocatechuate 4,5-dioxygenase.
Kasai D.,Masai E.,Katayama Y.,Fukuda M.
FEMS Microbiol. Lett. 274 (2007) 323-8 [PMID: 17645527]  Abstract
Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds.
Masai E.,Katayama Y.,Fukuda M.
Biosci. Biotechnol. Biochem. 71 (2007) 1-15 [PMID: 17213657]  Abstract
A second 5-carboxyvanillate decarboxylase gene, ligW2, is important for lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6.
Peng X.,Masai E.,Kasai D.,Miyauchi K.,Katayama Y.,Fukuda M.
Appl. Environ. Microbiol. 71 (2005) 5014-21 [PMID: 16151081]  Abstract
A tetrahydrofolate-dependent O-demethylase, LigM, is crucial for catabolism of vanillate and syringate in Sphingomonas paucimobilis SYK-6.
Abe T.,Masai E.,Miyauchi K.,Katayama Y.,Fukuda M.
J. Bacteriol. 187 (2005) 2030-7 [PMID: 15743951]  Abstract
Characterization of the gallate dioxygenase gene: three distinct ring cleavage dioxygenases are involved in syringate degradation by Sphingomonas paucimobilis SYK-6.
Kasai D.,Masai E.,Miyauchi K.,Katayama Y.,Fukuda M.
J. Bacteriol. 187 (2005) 5067-74 [PMID: 16030198]  Abstract
A novel tetrahydrofolate-dependent O-demethylase gene is essential for growth of Sphingomonas paucimobilis SYK-6 with syringate.
Masai E.,Sasaki M.,Minakawa Y.,Abe T.,Sonoki T.,Miyauchi K.,Katayama Y.,Fukuda M.
J. Bacteriol. 186 (2004) 2757-65 [PMID: 15090517]  Abstract
Characterization of the 3-O-methylgallate dioxygenase gene and evidence of multiple 3-O-methylgallate catabolic pathways in Sphingomonas paucimobilis SYK-6.
Kasai D.,Masai E.,Miyauchi K.,Katayama Y.,Fukuda M.
J. Bacteriol. 186 (2004) 4951-9 [PMID: 15262932]  Abstract
Characterization of the 4-carboxy-4-hydroxy-2-oxoadipate aldolase gene and operon structure of the protocatechuate 4,5-cleavage pathway genes in Sphingomonas paucimobilis SYK-6.
Hara H.,Masai E.,Miyauchi K.,Katayama Y.,Fukuda M.
J. Bacteriol. 185 (2003) 41-50 [PMID: 12486039]  Abstract
Roles of the enantioselective glutathione S-transferases in cleavage of beta-aryl ether.
Masai E.,Ichimura A.,Sato Y.,Miyauchi K.,Katayama Y.,Fukuda M.
J. Bacteriol. 185 (2003) 1768-75 [PMID: 12618439]  Abstract
Cloning and characterization of the ferulic acid catabolic genes of Sphingomonas paucimobilis SYK-6.
Masai E.,Harada K.,Peng X.,Kitayama H.,Katayama Y.,Fukuda M.
Appl. Environ. Microbiol. 68 (2002) 4416-24 [PMID: 12200295]  Abstract
Cloning of a Sphingomonas paucimobilis SYK-6 gene encoding a novel oxygenase that cleaves lignin-related biphenyl and characterization of the enzyme.
Peng X.,Egashira T.,Hanashiro K.,Masai E.,Nishikawa S.,Katayama Y.,Kimbara K.,Fukuda M.
Appl. Environ. Microbiol. 64 (1998) 2520-7 [PMID: 9647824]  Abstract
A bacterial enzyme degrading the model lignin compound beta-etherase is a member of the glutathione-S-transferase superfamily.
Masai E.,Katayama Y.,Kubota S.,Kawai S.,Yamasaki M.,Morohoshi N.
FEBS Lett. 323 (1993) 135-40 [PMID: 8495726]  Abstract
Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis.
Noda Y.,Nishikawa S.,Shiozuka K.,Kadokura H.,Nakajima H.,Yoda K.,Katayama Y.,Morohoshi N.,Haraguchi T.,Yamasaki M.
J. Bacteriol. 172 (1990) 2704-9 [PMID: 2185230]  Abstract
Detection and localization of a new enzyme catalyzing the beta-aryl ether cleavage in the soil bacterium (Pseudomonas paucimobilis SYK-6).
Masai E.,Katayama Y.,Nishikawa S.,Yamasaki M.,Morohoshi N.,Haraguchi T.
FEBS Lett. 249 (1989) 348-52 [PMID: 2737293]  Abstract

close this sectionDesulfovibrio magneticus RS-1 (= NBRC 104933)

close this sectionAbout this genome

Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria.  nite logo
Nakazawa H.,Arakaki A.,Narita-Yamada S.,Yashiro I.,Jinno K.,Aoki N.,Tsuruyama A.,Okamura Y.,Tanikawa S.,Fujita N.,Takeyama H.,Matsunaga T.
Genome Res. 19 (2009) 1801-8 [PMID: 19675025]  Abstract

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Proteomic analysis of irregular, bullet-shaped magnetosomes in the sulphate-reducing magnetotactic bacterium Desulfovibrio magneticus RS-1.
Matsunaga T.,Nemoto M.,Arakaki A.,Tanaka M.
Proteomics 9 (2009) 3341-3352 [PMID: 19579222]  Abstract
Formation of magnetite by bacteria and its application.
Arakaki A.,Nakazawa H.,Nemoto M.,Mori T.,Matsunaga T.
J R Soc Interface 5 (2008) 977-99 [PMID: 18559314]  Abstract
Desulfovibrio magneticus sp. nov., a novel sulfate-reducing bacterium that produces intracellular single-domain-sized magnetite particles.
Sakaguchi T.,Arakaki A.,Matsunaga T.
Int. J. Syst. Evol. Microbiol. 52 (2002) 215-21 [PMID: 11837306]  Abstract
Cadmium recovery by a sulfate-reducing magnetotactic bacterium, Desulfovibrio magneticus RS-1, using magnetic separation.
Arakaki A.,Takeyama H.,Tanaka T.,Matsunaga T.
Appl. Biochem. Biotechnol. 98-100 (2002) 833-40 [PMID: 12018305]  Abstract
Magnetite formation by a sulphate-reducing bacterium.
Sekiguchi T., Burgess JG., Matsunaga T.
Nature 365 (1993) 47-49  Abstract

close this sectionSalmonella enterica serovar Typhimurium T000240

close this sectionAbout this genome

Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome.
Izumiya H, Sekizuka T, Nakaya H, Taguchi M, Oguchi A, Ichikawa N, Nishiko R, Yamazaki S, Fujita N, Watanabe H, Ohnishi M, Kuroda M.
Antimicrobial Agents and Chemotherapy   Comment