What's new
2011-09-09Release of the Saccharomyces cerevisiae K7 genomic data
 | We published the genomic data of Saccharomyces cerevisiae K7. |
2011-09-01Release of the Sphingobium sp. SYK-6 genomic data
 | We published the genomic data of Sphingobium sp. SYK-6 (= NBRC 103272). |
2011-08-19Release of proteome analysis result of Sulfolobus tokodaii 7T
 | We have analyzed the proteome of Sulfolobus tokodaii 7T by using the following method; 2D-PAGE followed by N-terminal amino acid sequencing. List of updated genes Changed ORFs
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2011-08-01The entire genome of Sulfolobus tokodaii 7T was re-annotated
 | We thoroughly updated gene assignment and description of S. tokodaii genome.
Genes that had originally been predicted based on 6-frame translation were re-assigned by gene finding software and manual inspection. Annotation that had been done based on
poor similarity information was updated. Furthermore, we assigned more than 1,800 references against 1,078 genes as the basis of gene description. All assigned genes were re-classified based on cellular functions using KEGG-like pathway category. Please click here to get a convert table file.(list of changed features) |
2011-07-29Several information was added to Aeropyrum pernix K1T
 | We added two feature information to Aeropyrum pernix K1T.
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2011-06-01Release of the Microlunatus phosphovorus NM-1T genomic data
 | We published the genomic data of Microlunatus phosphovorus NM-1T (= NBRC 101784). |
2011-03-29Release of the Acidiphilium multivorum AIU301T genomic data
 | We published the genomic data of Acidiphilium multivorum AIU301 (= NBRC 100883). |
2011-03-16About influence of the planned outage
 | DOGAN service will stop for about 10 minutes in a day because of the planned outage. [This might be extended or reduced in some situations.] We apologize for the inconvenience. |
2011-03-07Release of proteome analysis result of Aspergillus oryzae RIB40
 | We have analyzed the proteome of Aspergillus oryzae RIB40 by using the following methods; two-dimensional PAGE followed by MALDI-TOFMS, one-dimesional SDS-PAGE in combination with two-dimensional LC-MS/MS, multi-dimensional LC-MS/MS. |
2011-03-02Announcement of maintenance : Aspergillus oryzae genomic data
| Aspergillus oryzae genomic data will be unavailable due to data maintenance from 9:30 to 12:00 on 7 March 2011 (Japanese Standard Time). [This might be extended or reduced in some situations.] We apologize for the inconvenience. |
2011-01-24Release of Anaerolinea thermophila UNI-1T genomic data.
 | We published the genomic data of Anaerolinea thermophila UNI-1T (= NBRC 100420). |
2010-11-26Release of the Salmonella enterica serovar Typhimurium T000240 genomic data
 | We published the genomic data of Salmonella enterica serovar Typhimurium T000240. |
2010-11-11Release of the Kitasatospora setae NBRC 14216T genomic sequence data
 | We published the genomic data of Kitasatospora setae NBRC 14216T (= KM-6054T). |
2010-03-29Release of the Arthrospira (Spirulina) platensis NIES-39 genomic sequence data
 | We published the genomic data of Arthrospira (Spirulina) platensis NIES-39. |
Release of the Sphingobium japonicum UT26ST genomic sequence data
 | We published the genomic data of Sphingobium japonicum UT26ST (= NBRC 101211) including the information of DNA clones distributed from the NBRC. |
2010-03-05Release of the Deferribacter desulfuricans SSM1T genomic sequence data
 | We published the genomic data of Deferribacter desulfuricans SSM1T (= NBRC 101012) including the information of DNA clones distributed from the NBRC. |
2010-01-04Release of the Methanocella paludicola SANAET genomic sequence data
 | We published the genomic data of Methanocella paludicola SANAET (= NBRC 101707) including the information of DNA clones distributed from the NBRC. |
2009-10-20Release of the Acetobacter pasteurianus IFO 3283 genomic sequence data
 | We published the genome data of Acetobacter pasteurianus IFO 3283 including the information of DNA clones distributed from the NBRC |
2009-08-12Desulfovibrio magneticus RS-1 database was updated (We changed information of several ORFs)
 | List of ORFs updated in annotation EC
Product
Category
Gene
New ORFs
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2009-07-31Release of the Desulfovibrio magneticus RS-1T genomic sequence data
 | We published the genome data of Desulfovibrio magneticus RS-1 (NBRC 104933) including the information of DNA clones distributed from the NBRC. |
2009-05-09Rhodococcus erythropolis PR4 database was updated (We changed EC number of several ORFs)
| List of ORFs updated in annotation
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Kocuria rhizophila DC2201 database was updated (We changed EC number of several ORFs)
 | List of ORFs updated in annotation
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Corynebacterium efficiens YS-314 were updated (We changed EC number of ORFs)
 | List of ORFs updated in annotation
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Rhodococcus opacus B4 database was updated (We changed EC number of several ORFs)
| List of ORFs updated in annotation
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Brevibacillus brevis NBRC 100599 database was updated (We changed EC number of several ORFs)
| List of ORFs updated in annotation
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2009-04-09Brevibacillus brevis NBRC 100599 database was updated (We changed EC number of several ORFs)
| List of ORFs updated in annotation
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2009-03-31The entire genome of Kocuria rhizophila DC2201 was re-annotated
| We re-annotated Kocuria rhizophila DC2201 and updated the features of K. rhizophila genome in DOGAN database. List of ORFs updated in annotation EC
Product
Category
Gene
Position
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Release of the Brevibacillus brevis 47 genomic sequence data
 | We published the genomic data of Brevibacillus brevis 47 (NBRC 100599) including the information of DNA clones distributed from the NBRC. |
Release of the Gemmatimonas aurantiaca T-27T genomic sequence data
 | We published the genomic data of Gemmatimonas aurantiaca T-27T (NBRC 100505) including the information of DNA clones distributed from the NBRC. This is the first report of genome sequence of bacteria belonging to the phylum Gemmatimonadetes. |
Release of the Rhodococcus erythropolis PR4 genomic sequence data
 | We published the genomic data of Rhodococcus erythropolis PR4 (NBRC 100887) including the information of DNA clones distributed from the NBRC. This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan. |
Release of the Rhodococcus opacus B4 genomic sequence data
 | We published the genomic data of Rhodococcus opacus B4 including the information of DNA clones distributed from the NBRC. This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan. |
2008-03-31Release of the Kocuria rhizophila genomic sequence data
 | We published the genomic data of Kocuria rhizophila DC2201 (NBRC 103217) including the information of DNA clones distributed from the NBRC. This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan. |
2007-04-06The entire genome of Pyrococcus horikoshii OT3 was re-annotated
 | We re-annotated Pyrococcus horikoshii OT3 and updated the features of P. horikoshii genome in DOGAN database.
A comparison table of old and new ORF/gene identifiers
Some ORF/gene identifiers of Pyrococcus horikoshii were replaced with new identifiers by the following rules. 1. ORF numbers were inherited except for those with previous identifiers starting with 'PHS'. 2. An alphabetical character like 'a' was added after the ORF number where new ORF was inserted between existing ORFs, including those with previous identifiers starting with 'PHS'. 3. Version number like '.1' was added where the start position of existing ORF was changed. Consequently, the ORFs data was changed as follows. 1. Number of ORFs: 2,061 -> 1,883 2. Number of ORFs changed in N-terminus: 600 (48 from 'PHS' ORFs) 3. Number of deleted ORFs : 367 (11 from 'PH' ORFs) 4. Number of newly added ORFs : 189
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Sulfolobus tokodaii strain 7 database was updated (We changed coordinates of rRNA and tRNA genes and deleted several overlapped ORFs)
 | List of updated genes Changed rRNAs
Changed tRNAs
Deleted ORFs
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Staphylococcus aureus MW2 database was updated (We changed gene and product information of several ORFs)
 | List of ORFs updated in annotation
We thank Dr. Enrique D. Vines, University of Western Ontario for letting us know about his study.
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Staphylococcus aureus N315 database was updated (We changed gene and product information of several ORFs)
 | List of ORFs updated in annotation
We thank Dr. Enrique D. Vines, University of Western Ontario for letting us know about his study.
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2007-03-30A new function for displaying clone information on the Aspergillus oryzae RIB40 genome
 | We added a new function to the DOGAN for displaying the information of the microbial genomic DNA clones distributed from the NBRC. You can search for the clone covering your target gene(s) of Aspergillus oryzae RIB40 at the DOGAN. |
2006-06-19Comparative genomic data of staphylococcal genomes was released
 | Hundreds of microbial genomes have already been completely sequenced including those analyzed at NITE. To further enhance the usefulness of the results of genome analysis, we added a new feature to the DOGAN to present comparative genomics data. We analyzed the relationships among all genes/ORFs in the five staphylococcal genomes and the results were incorporated into the DOGAN. You can compare genes/ORFs in the genomes and get the syntenic regions or points of possible genomic rearrangements displayed in the dotplot viewer. |
2006-06-02Release of proteome analysis result of Aeropyrum pernix K1
| We have analyzed the proteome of Aeropyrum pernix K1 by using the following methods; two-dimensional PAGE followed by MALDI-TOFMS, one-dimesional SDS-PAGE in combination with two-dimensional LC-MS/MS, multi-dimensional LC-MS/MS and 2D-PAGE followed by N-terminal amino acid sequencing. |
2005-12-21Release of the Aspergillus oryzae genomic sequence data
 | Genome analysis of Aspergillus oryzae RIB40 has been carried out in collaboration with the National Institute of Advanced Industrial Science and Technology (AIST) and other members of the A. oryzae Genome Analysis Consortium and the resultant genomic sequence data are now released. At the same time, cross-reference information concerning the eight archaeal and bacterial genomes published in DOGAN has newly been included by linking them with the data contained in DDBJ, EMBL, GenBank and UniProt. |
2005-07-25Important notice and apology
| A serious error in a sequence file was discovered that has been left unnoticed for nine months. Those who downloaded regional nucleotide sequences of Staphylococcus aureus MW2 during the period starting October 2004 till June 2005 were found to have mistakenly acquired unrelated sequences. We deeply apologize to all DOGAN users for the inconvenience. |
2005-06-30The complete genome sequence of Staphylococcus haemolyticus JCSC1435 was released
 | NITE has completely sequenced and analyzed the genome of the Staphylococcus haemolyticus JCSC1435 in collaboration with Prof. K. Hiramatsu and his colleagues at the Juntendo University. |
2003-07-24Corynebacterium efficiens YS-314 database was updated
| We were updated the Corynebacterium efficiens YS-314 genome in DOGAN database. |
2003-04-08Release of the Streptomyces avermitilis MA-4680 genomic sequence data
 | We published the genomic data of Streptomyces avermitilis MA-4680. |
2003-01-16Staphylococcus aureus N315 database was updated
| We were updated the several ORFs of Staphylococcus aureus N315 genome in DOGAN database. |
2002-05-25Release of the Staphylococcus aureus MW2 genomic sequence data
 | We published the genomic data of Staphylococcus aureus MW2. |
2002-03-29Release of the Corynebacterium efficiens YS-314 genomic sequence data
 | We published the genomic data of Corynebacterium efficiens YS-314. |
2001-09-13Release of the Sulfolobus tokodaii strain 7 genomic sequence data
 | We published the genomic data of Sulfolobus tokodaii strain 7. |
2001-06-12Staphylococcus aureus N315 database was updated
| we changed sequence of Staphylococcus aureus N315 genome. 2,813,641bp -> 2,814,816bp |
2001-04-20Release of the Staphylococcus aureus N315 genomic sequence data
 | We published the genomic data of Staphylococcus aureus N315. |
1999-07-30Release of the Aeropyrum pernix K1 genomic sequence data
 | We published the genomic data of Aeropyrum pernix K1. |
1999-01-12Pyrococcus horikoshii OT3 database was updated
| We were updated Pyrococcus horikoshii OT3 database. |
1998-10-19Pyrococcus horikoshii OT3 database was updated
| We added General_feature in Pyrococcus horikoshii OT3 database. |
1998-06-10Pyrococcus horikoshii OT3 database was changed
| we added GIF version in Positional Category. |
1998-04-30Release of the Pyrococcus horikoshii OT3 genomic sequence data
 | We published the genomic data of Pyrococcus horikoshii OT3. |