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微生物 : Austwickia chelonae

微生物株情報

NBRC番号 105200
学名 Austwickia chelonae
別名(シノニム) Dermatophilus chelonae
由来 JCM 9706 <- CIP 104541 <- A.M. Masters, W16
他保存機関番号 JCM 9706=ATCC 51576=CCUG 47447=DSM 44178=CIP 104541
他株番号 W16
参考文献
7857807
Dermatophilus chelonae sp. nov., isolated from chelonids in Australia. (Int J Syst Bacteriol. 1995)
21282898
Mobilicoccus pelagius gen. nov., sp. nov. and Piscicoccus intestinalis gen. nov., sp. nov., two new members of the family Dermatophilaceae, and reclassification of Dermatophilus chelonae (Masters et al. 1995) as Austwickia chelonae gen. nov., comb. nov. (J Gen Appl Microbiol. 2010)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseAUCHE_08_02800 AUCHE_05_03560
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseAUCHE_18_00910 AUCHE_16_00230
TRPE
(NRULE_0143)
Anthranilate synthase component IAUCHE_05_01520
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseAUCHE_05_00400
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseAUCHE_21_00530
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseAUCHE_05_04260
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinAUCHE_09_00010 AUCHE_08_00800 AUCHE_09_00040
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAUCHE_09_00030
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRAUCHE_22_00130
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAUCHE_09_00030
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinAUCHE_09_00020
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseAUCHE_05_00860
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseAUCHE_05_00850
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseAUCHE_16_01130
PANC
(NRULE_0118)
Pantothenate synthetaseAUCHE_05_00840
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseAUCHE_08_00400
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseAUCHE_08_00410
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeAUCHE_02_00130 AUCHE_05_01990
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseAUCHE_02_00180
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseAUCHE_08_00860
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseAUCHE_08_00850
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterAUCHE_21_00540 AUCHE_03_01630
E
OPUE
(NRULE_0222)
Sodium/proline symporterAUCHE_16_02110
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSAUCHE_05_04170
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTAUCHE_05_04150

ゲノム配列情報

BioProject IDPRJDB94
ローカスタグAUCHE
INSDC entriesBAGZ00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数33
サイズ(bp) 3,541,124
遺伝子数 3,048
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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