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遺伝子 : Pyridoxal biosynthesis lyase PdxS (PDXS)

遺伝子情報

ID NRULE_0206
遺伝子ID PDXS
作成日 2013/05/09
タンパク質名
Protein name
Full
Pyridoxal biosynthesis lyase PdxS
EC
EC 4.-.-.-
遺伝子名 pdxS
遺伝子条件 HAMAP; MF_01824; hit=1
参照
Gene Ontology
GO
GO:0016829, F:lyase activity, IEA:UniProtKB-KW
GO:0042823, P:pyridoxal phosphate biosynthetic process, IEA:HAMAP
Phylogenomic databases
eggNOG
COG0214, -
HOGENOM
HOG000227586, -
KO
K06215, -
ProtClustDB
PRK04180, -
Enzyme and pathway databases
BioCyc
MetaCyc:MONOMER-15502, -
UniPathway
UPA00245, -
Family and domain databases
HAMAP
MF_01824, PdxS, 1, -
InterPro
IPR013785, Aldolase_TIM
IPR011060, RibuloseP-bd_barrel
IPR001852, Snz1p/Sor1
Pfam
PF01680, SOR_SNZ, 1
PIRSF
PIRSF029271, Pdx1, 1
TIGRFAMs
TIGR00343, TIGR00343, 1
PROSITE
PS01235, PDXS_SNZ_1, 1
PS51129, PDXS_SNZ_2, 1
配列の特徴 該当データなし
注釈
Function
Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring
Pathway
Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis
Subunit structure
Forms a complex with PdxT
Sequence similarities
Belongs to the PdxS/SNZ family
参考文献
P37527 Bacillus subtilis (strain 168).
7584024
Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin. (DNA Res. 1994)
9384377
The complete genome sequence of the gram-positive bacterium Bacillus subtilis. (Nature. 1997)
14762015
Physical and enzymological interaction of Bacillus subtilis proteins required for de novo pyridoxal 5'-phosphate biosynthesis. (J Bacteriol. 2004)



関与する機能

機能名
Vitamin B6 biosynthesis (PdxS/PdxT pathway)

該当CDS

データダウンロード
学名 NBRC番号 CDS タンパク質名
Acaricomes phytoseiuli107788C501_11240pyridoxal biosynthesis lyase
Acidimicrobium ferrooxidans103882Afer_1221pyridoxine biosynthesis protein
Acidobacterium capsulatum15755ACP_0459pyridoxine biosynthesis protein
Actinoalloteichus cyanogriseus14455G443_17_01130pyridoxal biosynthesis lyase PdxS
Actinoalloteichus spitiensis102582ACTIDRAF_11965pyridoxal biosynthesis lyase
Actinomadura atramentaria14695G339_28370pyridoxal biosynthesis lyase
Actinoplanes missouriensis102363AMIS_62860putative pyridoxine biosynthesis protein
Actinopolyspora iraqiensis103187ACTIR_368_00030pyridoxal 5'-phosphate synthase subunit PdxS
Actinosynnema mirum14064Amir_2108pyridoxine biosynthesis protein
Aeropyrum pernix100138APE_0246.1pyridoxal 5'-phosphate biosynthesis protein
Alicyclobacillus acidocaldarius subsp. acidocaldarius15652Aaci_0012pyridoxine biosynthesis protein
Amycolatopsis azurea14573C791_3972Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit
Amycolatopsis mediterranei13415RAM_27070pyridoxal biosynthesis lyase PdxS
Anaerolinea thermophila100420ANT_01650pyridoxal biosynthesis lyase PdxS
Anoxybacillus flavithermus15317Aflv_0011Pyridoxine biosynthesis enzyme PDX1/PDX2, synthetase subunit
Arcanobacterium haemolyticum15585Arch_1141pyridoxine biosynthesis protein
Archaeoglobus profundus100127Arcpr_0680pyridoxine biosynthesis protein
Ardenticatena maritimaARMA_0615pyridoxal 5'-phosphate synthase pdxS subunit
Arthrobacter globiformis12137ARGLB_039_00140pyridoxal biosynthesis lyase PdxS
Austwickia chelonae105200AUCHE_05_04170pyridoxal biosynthesis lyase PdxS
Bacillus amyloliquefaciens15535BAMF_0011pyridoxine biosynthesis protein
Bacillus atrophaeus13721BATRMS_03_00130pyridoxal biosynthesis lyase PdxS
Bacillus cereus15305BC_0015pyridoxine biosynthesis protein
Bacillus licheniformis12200BL02353Vitamin B6 biosynthesis protein
Bacillus licheniformis12195BLi00016pyridoxal-5'-phosphate synthase synthase subunit PdxS
Bacillus mojavensis15718GYU_05_00050pyridoxal biosynthesis lyase PdxS
Bacillus mycoides101228bmyco0001_40Pyridoxal biosynthesis lyase pdxS
Bacillus pseudomycoides101232bpmyx0001_40Pyridoxal biosynthesis lyase pdxS
Bacillus psychrosaccharolyticus101233WYK_221_00370pyridoxal biosynthesis lyase PdxS
Bacillus pumilus12092BAT_4147pyridoxine biosynthesis protein
Bacillus subtilis3134BSU6633_17736pyridoxal biosynthesis lyase PdxS
Bacillus subtilis subsp. subtilis13719BSU00110glutamine amidotransferase for pyridoxal phosphate synthesis; pyridoxal 5'-phosphate synthase complex, synthase subunit
Bacillus thuringiensis101235bthur0008_40Pyridoxal biosynthesis lyase pdxS
Bacillus vallismortis101236BvalD_010100013854pyridoxal biosynthesis lyase PdxS
Beutenbergia cavernae16432Bcav_1986pyridoxine biosynthesis protein
Brevibacillus brevis100599BBR47_00160pyridoxal biosynthesis lyase PdxS
Brevibacterium linens12170BlinB_010200017696pyridoxine biosynthesis protein
Caldanaerobacter subterraneus subsp. tengcongensis100824TTE0823Pyridoxine biosynthesis enzyme
Caldilinea aerophila104270CLDAP_06630pyridoxal biosynthesis lyase PdxS
Caldisericum exile104410CSE_10820pyridoxal biosynthesis lyase PdxS
Candidatus Solibacter usitatusAcid_0290pyridoxine biosynthesis protein
Catenulispora acidiphila102108Caci_2349pyridoxine biosynthesis protein
Cellulomonas fimi15513Celf_2036pyridoxine biosynthesis protein
Cellulomonas flavigena3775Cfla_1789pyridoxine biosynthesis protein
Chloracidobacterium thermophilum BCabther_A2160pyridoxal phosphate synthase yaaD subunit
Chthonomonas calidiroseaCCALI_02632pyridoxal phosphate synthase yaaD subunit
Clostridium acetobutylicum13948CA_C0594Predicted phosphate-utilizing enzyme involved in pyridoxine/purine/histidine biosynthesis
Clostridium clariflavum101661Clocl_2200pyridoxal phosphate synthase yaaD subunit
Clostridium kluyveri12016CKR_2130hypothetical protein
Conexibacter woesei100937Cwoe_3160pyridoxine biosynthesis protein
Corynebacterium ammoniagenes12612HMPREF0281_00511pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
Corynebacterium callunae15359H924_03585pyridoxal biosynthesis lyase PdxS
Corynebacterium efficiens100395CE1779conserved hypothetical protein
Corynebacterium glutamicum12168Cgl0788Pyridoxine biosynthesis enzyme
Corynebacterium glutamicum12153KIQ_14132pyridoxal biosynthesis lyase PdxS
Corynebacterium matruchotii15360HMPREF0299_5149pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
Corynebacterium striatum15291HMPREF0308_1601pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
Corynebacterium terpenotabidum14764A606_06160pyridoxal biosynthesis lyase PdxS
Dehalococcoides mccartyiDehaBAV1_0362pyridoxal phosphate synthase yaaD subunit
Deinococcus proteolyticus101906Deipr_0165Pyridoxal biosynthesis lyase pdxS
Dictyoglomus turgidumDtur_1484pyridoxine biosynthesis protein
Fibrobacter succinogenesFisuc_0269pyridoxine biosynthesis protein
Fimbriimonas ginsengisoliOP10G_1471pyridoxal biosynthesis lyase PdxS
Frateuria aurantia3245Fraau_2136pyridoxine biosynthesis enzyme
Fusobacterium nucleatum subsp. NucleatumFN1463pyridoxine biosynthesis protein
Geodermatophilus obscurus13315Gobs_3182pyridoxine biosynthesis protein
Gordonia aichiensis108223GOACH_05_01320pyridoxal biosynthesis lyase PdxS
Gordonia alkanivorans16433GOALK_014_00360pyridoxal biosynthesis lyase PdxS
Gordonia amarae15530GOAMR_19_00280pyridoxal biosynthesis lyase PdxS
Gordonia amicalis100051GOAMI_17_01280pyridoxal biosynthesis lyase PdxS
Gordonia araii100433GOARA_064_00990pyridoxal biosynthesis lyase PdxS
Gordonia bronchialis16047Gbro_2293pyridoxine biosynthesis protein
Gordonia effusa100432GOEFS_050_00540pyridoxal biosynthesis lyase PdxS
Gordonia hirsuta16056GOHSU_18_01230pyridoxal biosynthesis lyase PdxS
Gordonia namibiensis108229GONAM_14_00160pyridoxal biosynthesis lyase PdxS
Gordonia otitidis100426GOOTI_135_00070pyridoxal biosynthesis lyase PdxS
Gordonia polyisoprenivorans16320GOPIP_056_00160pyridoxal biosynthesis lyase PdxS
Gordonia rhizosphera16068GORHZ_192_00150pyridoxal biosynthesis lyase PdxS
Gordonia rubripertincta101908GORBP_053_00490pyridoxal biosynthesis lyase PdxS
Gordonia sihwensis108236GSI01S_13_01650pyridoxal biosynthesis lyase PdxS
Gordonia soli108243GS4_19_00350pyridoxal biosynthesis lyase PdxS
Gordonia sputi100414GOSPT_064_00070pyridoxal biosynthesis lyase PdxS
Gordonia terrae100016GOTRE_006_00280pyridoxal biosynthesis lyase PdxS
Haloarcula vallismortis14741C437_11493pyridoxal biosynthesis lyase PdxS
Halobacillus halophilus102448HBHAL_1013pyridoxine biosynthesis protein
Halobacterium sp.VNG_1793Cconserved hypothetical protein
Haloplasma contractileHLPCO_001517Pyridoxal biosynthesis lyase PdxS protein
Herpetosiphon aurantiacusHaur_3808pyridoxine biosynthesis protein
Intrasporangium calvum12989Intca_1862pyridoxal phosphate synthase yaaD subunit
Jonesia denitrificans15587Jden_1600pyridoxine biosynthesis protein
Kineococcus radiotolerans101839Krad_3060pyridoxine biosynthesis protein
Kineosphaera limosa100340KILIM_011_00720pyridoxal biosynthesis lyase PdxS
Kitasatospora setae14216KSE_14480putative pyridoxal biosynthesis lyase PdxS
Kocuria rhizophila103217KRH_01130pyridoxal phosphate synthase component Pdx1
Kribbella flavida14399Kfla_4427pyridoxine biosynthesis protein
Ktedonobacter racemiferKrac_9163pyridoxine biosynthesis protein
Kyrpidia tusciae15312Btus_0012pyridoxine biosynthesis protein
Kytococcus sedentarius15357Ksed_15370pyridoxal phosphate synthase yaaD subunit
Limnochorda pilosa110152LIP_1094pyridoxal biosynthesis protein
Meiothermus ruber106122Mrub_1545pyridoxine biosynthesis protein
Meiothermus silvanus106475Mesil_2040pyridoxine biosynthesis protein
Methanocaldococcus jannaschii100440MJ_0677ethylene-inducible protein
Methanocella paludicola101707MCP_1448pyridoxal biosynthesis lyase PdxS
Methanococcus maripaludis101832MMP0103conserved hypothetical protein
Methanococcus maripaludisMmarC5_1573pyridoxal phosphate synthase yaaD subunit
Methanopyrus kandleriMK1371Pyridoxine biosynthesis enzyme
Micrococcus luteus3333Mlut_19930pyridoxal phosphate synthase yaaD subunit
Microlunatus phosphovorus101784MLP_26680pyridoxal biosynthesis lyase PdxS
Micromonospora aurantiaca16155Micau_2259pyridoxine biosynthesis protein
Mobilicoccus pelagius104925MOPEL_021_00580pyridoxal biosynthesis lyase PdxS
Nakamurella multipartita105858Namu_3415pyridoxine biosynthesis protein
Nitriliruptor alkaliphilusNitalDRAFT_3333pyridoxal 5'-phosphate synthase pdxS subunit
Nitrososphaera viennensisNVIE_029430pyridoxal biosynthesis lyase
Nocardiopsis dassonvillei14626Ndas_0823pyridoxine biosynthesis protein
Oceanithermus profundus100410Ocepr_1143pyridoxal phosphate synthase yaaD subunit
Paenibacillus alvei3343PAV_2c06730pyridoxal biosynthesis lyase PdxS
Paenibacillus peoriae15541PpeoK3_010100009303pyridoxal biosynthesis lyase PdxS
Paenibacillus polymyxa15309PPT_00470pyridoxal biosynthesis protein
Picrophilus torridus100828PTO0279pyridoxine biosynthesis protein
Propionibacterium acidipropionici12425PACID_18610Pyridoxal biosynthesis lyase pdxS
Propionibacterium avidum15671HMPREF9153_1995pyridoxal biosynthesis lyase PdxS
Pyrococcus horikoshii100139PH1355pyridoxal 5'-phosphate biosynthesis protein
Renibacterium salmoninarum15589RSal33209_2009pyridoxine biosynthesis protein
Rhodococcus erythropolis100887RER_29090probable pyridoxal phosphate synthase component Pdx1
Rhodococcus opacus108011ROP_68630pyridoxal phosphate synthase component Pdx1
Rothia dentocariosa12531HMPREF0733_11099pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
Rothia mucilaginosa15673ROTMU0001_0234pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
Rubrobacter xylanophilus100952Rxyl_1316Vitamin B6 biosynthesis protein
Saccharomonospora azurea14651SacazDRAFT_04507pyridoxal 5''-phosphate synthase, synthase subunit Pdx1
Saccharomonospora cyanea14841SaccyDRAFT_1862pyridoxal 5''-phosphate synthase, synthase subunit Pdx1
Saccharomonospora glauca14831SacglDRAFT_01716pyridoxal 5''-phosphate synthase, synthase subunit Pdx1
Saccharomonospora viridis12207Svir_14990pyridoxal phosphate synthase yaaD subunit
Saccharopolyspora erythraea13426SACE_2009putative pyridoxine biosynthesis protein
Saccharopolyspora spinosa15153SspiN1_010100027444pyridoxal biosynthesis lyase
Saccharothrix espanaensis15066BN6_30550Pyridoxal biosynthesis lyase pdxS
Salinispora arenicola105043Q5S_1191_00030pyridoxal biosynthesis lyase PdxS
Salinispora tropica105044Strop_1790pyridoxine biosynthesis protein
Selenomonas ruminantium subsp. lactilytica103574SELR_00890putative pyridoxal biosynthesis lyase PdxS
Sporichthya polymorpha12702Spopo_31_16220Pyridoxal biosynthesis lyase PdxS
Stackebrandtia nassauensis102104Snas_2410pyridoxine biosynthesis protein
Staphylococcus epidermidis12993SE_2262conserved hypothetical protein
Staphylococcus saprophyticus subsp. saprophyticus102446SSP2237putative pyridoxine biosynthesis protein
Streptococcus equinus12553HMPREF0819_0562pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
Streptococcus mitis106071SM12261_0228pyridoxine biosynthesis protein
Streptomyces avermitilis14893SAV6830putative pyridoxine biosynthesis protein
Streptomyces cattleya14057SCAT_5300glutamine amidotransferase for pyridoxal phosphate synthesis
Streptomyces clavuligerus13307SCLAV_0754Pyridoxal biosynthesis lyase pdxS
Streptomyces ghanaensis15414SSFG_05854pyridoxal biosynthesis lyase pdxS
Streptomyces mobaraensis13819H340_09455pyridoxal biosynthesis lyase PdxS
Streptomyces pristinaespiralis13074SSDG_04338pyridoxine biosynthesis protein
Streptomyces purpureus13925STRPU_03_01530Pyridoxal biosynthesis lyase PdxS
Streptomyces sviceus13980SSEG_05033pyridoxine biosynthesis protein
Streptomyces venezuelae13096SVEN_1123Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit
Streptosporangium roseum3776Sros_6121snz1; pyridoxine biosynthesis protein ; K06215 pyridoxine biosynthesis protein
Sulfolobus tokodaii100140STK_14410pyridoxal 5'-phosphate biosynthesis protein PdxS
Thermanaerovibrio acidaminovoransTaci_0566pyridoxine biosynthesis protein
Thermobispora bispora14880Tbis_2069pyridoxine biosynthesis protein
Thermococcus sp.GQS_05825pyridoxal biosynthesis lyase PdxS
Thermomicrobium roseumtrd_0026pyridoxine biosynthesis protein
Thermomonospora curvata15933Tcur_2105pyridoxine biosynthesis protein
Thermoproteus neutrophilus100436Tneu_0267Vitamin B6 biosynthesis protein
Thermotoga lettingae107922Tlet_1771pyridoxine biosynthesis protein
Thermotoga maritima100826TM_0473conserved hypothetical protein
Thermotoga naphthophila104846Tnap_0255pyridoxine biosynthesis protein
Thermotoga neapolitana107923CTN_0201Pyridoxal biosynthesis lyase pdxS
Thermotoga petrophila104847Tpet_0447pyridoxine biosynthesis protein
Thermotoga thermarum107925Theth_1830pyridoxal phosphate synthase yaaD subunit
Thermus thermophilus101084TTHA0704pyridoxine biosynthesis protein
Thermus thermophilus101085TT_C0352pyridoxine biosynthesis protein
Tsukamurella paurometabola16120Tpau_1926pyridoxine biosynthesis protein
Turicella otitidis106139HMPREF9719_01069pyridoxal biosynthesis lyase pdxS
Xylanimonas cellulosilytica107835Xcel_1662pyridoxine biosynthesis protein
Zimmermannella faecalis15706G328_00995pyridoxal biosynthesis lyase