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CDS information : Alnu_00250


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Organism
StrainCM020
Entry nameAlnumycin
Contig
Start / Stop / Direction21,851 / 22,351 / + [in whole cluster]
21,851 / 22,351 / + [in contig]
Location21851..22351 [in whole cluster]
21851..22351 [in contig]
TypeCDS
Length501 bp (166 aa)
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close this sectionAnnotation

Category4.1 transcriptional regulator
Productputative MarR family transcriptional regulator
Product (GenBank)AlnR8 MarR family regulator
Gene
Gene (GenBank)alnR8
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
PmId
[18940666] Characterization of the alnumycin gene cluster reveals unusual gene products for pyran ring formation and dioxan biosynthesis. (Chem Biol. , 2008)
Family/Domain
FD
IPR000835

close this sectionSequence

selected fasta
>putative MarR family transcriptional regulator [AlnR8 MarR family regulator]
MSSDGRQGAGLSVDNGVRTLLLLMPRVVARTKRTPVPQQLEEYNLAPRHLSLLAYLFFDG
PLAVSELATRLELVPATVSLLVGELNRYGVVDRKEDEADRRRKIVSIAEPYREAVRSWLE
NGVNAWRVALEPLSPAERQTFIDTLRVYERELMGAQERQAVAATAD
selected fasta
>putative MarR family transcriptional regulator [AlnR8 MarR family regulator]
ATGTCAAGCGATGGTCGGCAGGGGGCAGGGCTGAGCGTCGACAACGGGGTCCGGACGCTC
CTGCTCCTCATGCCGCGCGTCGTCGCACGTACCAAACGCACGCCGGTGCCTCAGCAGTTG
GAGGAGTACAACCTCGCTCCGCGCCACCTGTCCCTGCTGGCCTATCTGTTCTTCGACGGG
CCGCTCGCCGTCAGCGAGCTGGCCACCCGGCTGGAGTTGGTCCCGGCCACCGTCAGCCTG
CTCGTCGGGGAGTTGAACCGGTACGGCGTGGTGGACCGCAAGGAGGACGAGGCCGACCGG
CGCCGCAAGATCGTCAGCATCGCCGAGCCGTACCGGGAAGCGGTGCGCAGCTGGCTGGAG
AACGGCGTGAACGCCTGGCGGGTCGCACTCGAACCGCTGAGCCCGGCCGAACGGCAGACG
TTCATCGACACCCTGCGTGTGTACGAGCGGGAGCTCATGGGCGCGCAGGAGCGACAGGCA
GTCGCTGCCACCGCAGACTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR000835 Transcription regulator HTH, MarR-type (Family)
 [17-150]  PS50995
PS50995   HTH_MARR_2
 [38-138]  3.70000251046782e-14 SM00347
SM00347   HTH_MARR
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding (Domain)
 [34-150]  1.6e-20 G3DSA:1.10.10.10
G3DSA:1.10.10.10   Wing_hlx_DNA_bd
SignalP
 [1-29]  0.377 Signal
Bacteria, Gram-positive   
 [1-29]  0.33 Signal
Bacteria, Gram-negative   
 [1-29]  0.33 Signal
Eukaryota   
TMHMM No significant hit