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CDS information : Calm_00400


close this sectionLocation

Organism
StrainNRRL 15839
Entry nameCalicheamicin
Contig
Start / Stop / Direction48,717 / 49,559 / + [in whole cluster]
48,717 / 49,559 / + [in contig]
Location48717..49559 [in whole cluster]
48717..49559 [in contig]
TypeCDS
Length843 bp (280 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category4.1 transcriptional regulator
Productputative AraC family transcriptional regulator
Product (GenBank)CalR7
Gene
Gene (GenBank)calR7
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
PmId
[12183629] The calicheamicin gene cluster and its iterative type I enediyne PKS. (Science. , 2002)
Related Reference
ACC
Q8GME4
NITE
C1027_00490
PmId
[19159491] Role of sgcR3 in positive regulation of enediyne antibiotic C-1027 production of Streptomyces globisporus C-1027. (BMC Microbiol. , 2009)
[20551990] Manipulation of pathway regulation in Streptomyces globisporus for overproduction of the enediyne antitumor antibiotic C-1027. (J Antibiot (Tokyo). , 2010)
Family/Domain
FD
IPR018060

close this sectionSequence

selected fasta
>putative AraC family transcriptional regulator [CalR7]
MEQSREAAAARAIDYMRRHLSEPLQLADLARVVPFSPFHFHRLFRDVTTMTPARFLAALR
MAEARRMLLHSGLTVTAISGHVGYTSAGTFTTQFSRLVGTSPGHFRQMSRLLAGRPCHVL
AGWLRNAVTEVTRPRLVLHVPESEPGDLVLVGLRADGEAADASTTWAVAADGAQVPVVAR
PGPYQARVVLVRGDSTLTRALVDEEPTSHLVGTAELVLPQDGCAAVPVTTAPPRPTDPPA
LALGPVCRLVETFTRLAGPSGRPGPAWSAGRTALAAAAIA
selected fasta
>putative AraC family transcriptional regulator [CalR7]
ATGGAGCAGTCCCGGGAGGCGGCTGCGGCGCGGGCCATCGACTACATGCGCCGGCACCTG
TCGGAGCCGCTGCAGCTGGCCGACCTGGCCCGGGTTGTCCCCTTCAGCCCGTTCCACTTC
CACCGGCTGTTCCGCGACGTGACCACGATGACCCCGGCCCGCTTCCTCGCCGCGCTGCGG
ATGGCGGAGGCCCGCCGGATGCTGCTGCACTCCGGCCTGACGGTGACCGCGATCAGCGGC
CACGTCGGCTACACGAGCGCGGGGACCTTCACCACCCAGTTCTCCCGGCTGGTCGGCACG
TCGCCGGGGCACTTCCGGCAGATGTCCCGGCTGCTGGCCGGCCGGCCCTGCCACGTCCTG
GCGGGCTGGCTGCGCAACGCCGTCACGGAGGTCACCCGACCCCGGCTGGTGCTGCACGTG
CCCGAGAGCGAGCCCGGCGACCTGGTGCTGGTCGGCCTGCGGGCCGACGGGGAGGCCGCG
GACGCGTCGACCACGTGGGCGGTGGCGGCCGACGGCGCGCAGGTCCCGGTGGTGGCGCGG
CCGGGCCCGTACCAGGCCCGGGTCGTGCTGGTCCGGGGCGACAGCACGCTGACCCGCGCC
CTGGTGGACGAGGAGCCCACCAGCCATCTGGTCGGCACCGCCGAACTGGTGCTGCCCCAG
GACGGCTGCGCGGCCGTCCCGGTCACCACCGCGCCGCCGCGGCCGACCGACCCGCCGGCG
CTGGCCCTCGGCCCGGTGTGCCGGCTCGTCGAGACGTTCACGCGGCTGGCCGGCCCGTCG
GGCCGGCCGGGTCCGGCCTGGTCGGCCGGCCGCACCGCGCTGGCCGCGGCGGCCATCGCG
TGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR009057 Homeodomain-like (Domain)
 [4-59]  6.90000000000001e-24 G3DSA:1.10.10.60 [60-109]  2.1e-17 G3DSA:1.10.10.60
G3DSA:1.10.10.60   Homeodomain-rel
 [5-56]  3.7999986264479e-12 SSF46689 [59-107]  2.00000075217457e-11 SSF46689
SSF46689   Homeodomain_like
IPR018060 DNA binding HTH domain, AraC-type (Domain)
 [10-108]  PS01124
PS01124   HTH_ARAC_FAMILY_2
 [23-106]  3.0999994589937e-27 SM00342
SM00342   HTH_ARAC
SignalP No significant hit
TMHMM No significant hit