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CDS information : Dynm_00010


close this sectionLocation

Organism
StrainATCC 53710 (=NBRC 15963)
Entry nameDynemicin
Contig
Start / Stop / Direction2,116 / 3,345 / + [in whole cluster]
2,116 / 3,345 / + [in contig]
Location2116..3345 [in whole cluster]
2116..3345 [in contig]
TypeCDS
Length1,230 bp (409 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)hypothetical protein
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF2
Reference
ACC
PmId
[18328078] The biosynthetic genes encoding for the production of the dynemicin enediyne core in Micromonospora chersina ATCC53710. (FEMS Microbiol Lett. , 2008)

close this sectionSequence

selected fasta
>hypothetical protein [hypothetical protein]
MGSRTASEPTPSATADAGGGKIVMGAAGAAVTVATMLTNALAYLVPVLGAHRLDPADLGA
LATVLALGAIAAVPGFGLQIAVAVHRARSGPTRTGRLALLTAAVSAAVTVVAAPVLTVLL
RLPVALTLLLAATTFATVLAGRWLGELQGDQRFLRLSAAMTVLAVGRYGGLVVGLALGGD
AVTALALTAVTGLLVLPLLVRLAAGGRPAPTAGPGQRDLRPGDVMTACAATLATLTISYA
DLILARQLLPAAGSGAYAVGAVLTKGALWGPQVVTLLVLPRLARGDRRARALGLAVILAC
GSVLVAAAAFGGELAFRLAGGADYLHLAGEAPLFVATGALYAVVFMLVNDRVASGVRFPA
APLWAATVGLAGAALLVAPRTVEGVLGCALTTAALTAAVMTWLALRPRR
selected fasta
>hypothetical protein [hypothetical protein]
GTGGGATCCCGGACGGCGTCGGAACCGACGCCGTCCGCGACGGCCGACGCGGGCGGCGGG
AAGATCGTGATGGGCGCGGCCGGCGCCGCCGTCACGGTCGCCACCATGCTGACCAACGCG
CTCGCCTACCTGGTGCCGGTGCTCGGCGCCCACCGGCTCGACCCGGCCGACCTGGGGGCG
CTGGCGACCGTCCTCGCGCTCGGCGCGATCGCCGCCGTGCCGGGATTCGGCCTCCAGATC
GCCGTCGCGGTGCACCGGGCGCGGAGCGGCCCCACCCGCACCGGCCGGCTGGCGCTGCTC
ACCGCCGCCGTCAGCGCCGCGGTCACGGTGGTCGCGGCGCCGGTGCTGACCGTGCTGCTG
CGGCTGCCGGTGGCGCTCACCCTGCTGCTCGCGGCGACCACCTTCGCCACCGTGCTGGCC
GGCCGGTGGCTCGGCGAGCTCCAGGGTGACCAGCGCTTCCTCCGGCTCTCCGCGGCGATG
ACGGTCCTCGCCGTCGGCCGGTACGGCGGCCTTGTCGTCGGGCTGGCGCTGGGCGGGGAC
GCCGTCACCGCGCTGGCGCTCACCGCGGTCACCGGCCTCCTCGTGCTGCCGCTGCTGGTC
CGCCTCGCCGCCGGCGGCCGACCGGCGCCCACCGCCGGGCCCGGGCAGCGCGACCTGCGC
CCCGGGGACGTGATGACCGCGTGCGCGGCCACGCTGGCGACGCTCACCATCTCGTACGCC
GATTTGATCCTGGCCCGCCAACTGCTGCCGGCGGCCGGCTCCGGGGCGTACGCGGTCGGC
GCGGTGCTGACAAAGGGCGCGCTCTGGGGGCCGCAGGTGGTGACCCTGCTGGTGCTGCCC
CGGCTGGCCCGGGGCGACCGGCGGGCCCGGGCGCTGGGCCTGGCGGTCATCCTCGCCTGC
GGGTCGGTGCTGGTGGCCGCCGCGGCGTTCGGCGGGGAGCTGGCGTTCCGGCTGGCCGGC
GGCGCCGACTACCTGCACCTGGCCGGCGAGGCTCCGCTCTTCGTCGCCACCGGCGCCCTG
TACGCGGTCGTCTTCATGCTGGTCAACGACCGGGTGGCCAGCGGTGTCCGGTTCCCCGCG
GCACCCCTGTGGGCGGCCACCGTGGGGCTGGCCGGGGCGGCCCTGCTGGTCGCCCCGCGT
ACGGTCGAGGGGGTCCTCGGCTGTGCGCTGACCACCGCCGCGCTGACCGCCGCCGTGATG
ACCTGGCTGGCCCTGCGCCCGCGGCGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro No significant hit
SignalP No significant hit
TMHMM
 [23-45]  Transmembrane (i-o) [60-82]  Transmembrane (o-i) [95-117]  Transmembrane (i-o) [122-144]  Transmembrane (o-i) [156-178]  Transmembrane (i-o) [182-204]  Transmembrane (o-i) [224-246]  Transmembrane (i-o) [256-278]  Transmembrane (o-i) [290-312]  Transmembrane (i-o) [327-349]  Transmembrane (o-i) [356-378]  Transmembrane (i-o) [383-405]  Transmembrane (o-i)
Transmembrane 12